Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014629.1

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

27137 .. 30791

Gene Structure 3655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014629.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ctgcttgatctccaggaggtcgagacggttctcagcgacgtcaaggtcataccggcgaacaagcactgtgagtgggccgatttcatggtcctcgccaccggaaggtccacctggcacgtcaagaacatcgcccaagccctaatttacaaggcagggcaagagggaggcaagtggattgtcattgactctgggaaagttatagttcatgctcttgatgagaatgctaaagcttactacaatctggagactctttggacaacaaagccgtctgagaaagaaccgattcagcctgcatttttggaggataaatcactaattcctgtcaacctctggatgaacaatgctcaagctagatcaagcactcactatgatacacaccataaccttctctgcttagtttctggctgtaaacaaggggatgcactatttattcttgaaggctggttccaccaggtggatagtgatgatctgacaatcactgtcaacttttggtggcaatcaaacataatgtcatgcatgtcagaacacatggatgcatattatttgcgcatcatcatcatcttgaatcagaatgacaaggatttggatcgggcgagtgagaggcaggatcttgaaggaaaggagctaaagcaagaaactactttgcatgaactggaactggttgccgtccatgctcttcatgaacttgtttctttagttcacagtcatgtcaatgctgcagagcaaagacaaccggagcaatccacttcaacaactgattgcagcagtatattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

258

Amino Acids

29.33

Weight (kDa)

5.07

Isoelectric Point (pI)

50.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AatII	GACGTC	1 cut(s)	42
Acc16I	TGCGCA	1 cut(s)	548
AccB7I	CCANNNNNTGG	1 cut(s)	454
AclWI	GGATC	2 cut(s)	594, 615
AcyI	GRCGYC	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	102, 454
AgsI	TTSAA	4 cut(s)	437, 565, 614, 750
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	3 cut(s)	12, 110, 450
AluBI	AGCT	3 cut(s)	230, 350, 625
AluI	AGCT	3 cut(s)	230, 350, 625
Alw26I	GTCTC	2 cut(s)	17, 239
AlwI	GGATC	2 cut(s)	594, 615
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	716, 762
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
Asp700I	GAANNNNTTC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	3 cut(s)	75, 88, 105
AvaII	GGWCC	2 cut(s)	88, 105
BbvI	GCAGC	1 cut(s)	703
BceAI	ACGGC	2 cut(s)	250, 650
BciT130I	CCWGG	3 cut(s)	14, 112, 452
BcoDI	GTCTC	2 cut(s)	17, 239
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	717
BisI	GCNGC	2 cut(s)	717, 763
BlsI	GCNGC	2 cut(s)	718, 764
Bme1390I	CCNGG	3 cut(s)	14, 112, 452
Bme18I	GGWCC	2 cut(s)	88, 105
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	75, 88, 105
BmiI	GGNNCC	1 cut(s)	446
BmrFI	CCNGG	3 cut(s)	14, 112, 452
BmsI	GCATC	3 cut(s)	409, 523, 558
BpmI	CTGGAG	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	585
BsaHI	GRCGYC	1 cut(s)	39
BsaWI	WCCGGW	2 cut(s)	98, 733
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 454
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	657, 663
Bse8I	GATNNNNATC	1 cut(s)	585
BseBI	CCWGG	3 cut(s)	14, 112, 452
BseGI	GGATG	3 cut(s)	339, 424, 538
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	102, 454
BseMII	CTCAG	2 cut(s)	46, 261
BseNI	ACTGG	2 cut(s)	657, 663
BseXI	GCAGC	1 cut(s)	703
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	53, 99, 734
BslI	CCNNNNNNNGG	2 cut(s)	102, 454
BsmAI	GTCTC	2 cut(s)	17, 239
BsmBI	CGTCTC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	5 cut(s)	7, 353, 466, 586, 607
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	2 cut(s)	45, 262
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	1 cut(s)	446
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	2 cut(s)	594, 615
BspQI	GCTCTTC	1 cut(s)	681
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	657, 663
BssAI	RCCGGY	1 cut(s)	52
BssMI	GATC	5 cut(s)	7, 353, 466, 586, 607
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	3 cut(s)	14, 112, 452
Bst4CI	ACNGT	4 cut(s)	28, 68, 481, 704
Bst6I	CTCTTC	1 cut(s)	681
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	3 cut(s)	32, 270, 394
BstF5I	GGATG	3 cut(s)	339, 424, 538
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	5 cut(s)	10, 356, 469, 589, 610
BstMAI	GTCTC	2 cut(s)	17, 239
BstMBI	GATC	5 cut(s)	7, 353, 466, 586, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	671
BstNI	CCWGG	3 cut(s)	14, 112, 452
BstNSI	RCATGY	1 cut(s)	520
BstSCI	CCNGG	3 cut(s)	12, 110, 450
BstSFI	CTRYAG	1 cut(s)	717
BstV1I	GCAGC	1 cut(s)	703
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	3 cut(s)	339, 424, 538
BtsIMutI	CAGTG	2 cut(s)	64, 477
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	679
CfoI	GCGC	1 cut(s)	549
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	75, 88, 105
CsiI	ACCWGGT	1 cut(s)	450
CviAII	CATG	9 cut(s)	85, 206, 513, 517, 529, 647, 671, 680, 707
CviJI	RGCY	9 cut(s)	77, 137, 230, 265, 289, 350, 405, 441, 625
CviKI_1	RGCY	9 cut(s)	77, 137, 230, 265, 289, 350, 405, 441, 625
DdeI	CTNAG	3 cut(s)	32, 270, 394
DpnI	GATC	5 cut(s)	9, 355, 468, 588, 609
DpnII	GATC	5 cut(s)	7, 353, 466, 586, 607
DraIII	CACNNNGTG	1 cut(s)	454
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Eco47I	GGWCC	2 cut(s)	88, 105
EcoRII	CCWGG	3 cut(s)	12, 110, 450
EcoT22I	ATGCAT	2 cut(s)	518, 538
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	9 cut(s)	88, 209, 516, 520, 532, 650, 674, 683, 710
FatI	CATG	9 cut(s)	84, 205, 512, 516, 528, 646, 670, 679, 706
Fnu4HI	GCNGC	2 cut(s)	717, 763
FokI	GGATG	3 cut(s)	346, 431, 545
Fsp4HI	GCNGC	2 cut(s)	717, 763
FspBI	CTAG	1 cut(s)	351
FspI	TGCGCA	1 cut(s)	548
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	2 cut(s)	717, 763
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	3 cut(s)	53, 99, 734
HhaI	GCGC	1 cut(s)	549
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	9 cut(s)	88, 209, 516, 520, 532, 650, 674, 683, 710
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HincII	GTYRAC	2 cut(s)	325, 484
HindII	GTYRAC	2 cut(s)	325, 484
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	4 cut(s)	185, 247, 283, 565
HpaII	CCGG	3 cut(s)	53, 99, 734
Hpy166II	GTNNAC	5 cut(s)	108, 325, 410, 484, 700
Hpy188I	TCNGA	4 cut(s)	271, 471, 523, 570
Hpy188III	TCNNGA	9 cut(s)	22, 121, 212, 242, 331, 434, 562, 611, 680
Hpy8I	GTNNAC	5 cut(s)	108, 325, 410, 484, 700
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	96, 395, 431, 608
HpyCH4III	ACNGT	4 cut(s)	28, 68, 481, 704
HpyCH4IV	ACGT	2 cut(s)	39, 117
HpyCH4V	TGCA	7 cut(s)	293, 422, 516, 536, 646, 719, 762
HpyF10VI	GCNNNNNNNGC	1 cut(s)	671
HpyF3I	CTNAG	3 cut(s)	32, 270, 394
HpySE526I	ACGT	2 cut(s)	39, 117
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	9 cut(s)	88, 209, 516, 520, 532, 650, 674, 683, 710
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	5 cut(s)	7, 353, 466, 586, 607
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	2 cut(s)	622, 736
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	3 cut(s)	409, 523, 558
MabI	ACCWGGT	1 cut(s)	450
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	2 cut(s)	39, 117
MalI	GATC	5 cut(s)	9, 355, 468, 588, 609
MboI	GATC	5 cut(s)	7, 353, 466, 586, 607
MboII	GAAGA	1 cut(s)	668
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	2 cut(s)	141, 315
MlyI	GAGTC	2 cut(s)	179, 241
MnlI	CCTC	7 cut(s)	10, 101, 154, 158, 295, 338, 594
Mph1103I	ATGCAT	2 cut(s)	518, 538
MroXI	GAANNNNTTC	1 cut(s)	282
MslI	CAYNNNNRTG	3 cut(s)	531, 705, 711
MspI	CCGG	3 cut(s)	53, 99, 734
MspR9I	CCNGG	3 cut(s)	14, 112, 452
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	3 cut(s)	14, 112, 452
MwoI	GCNNNNNNNGC	1 cut(s)	671
NdeII	GATC	5 cut(s)	7, 353, 466, 586, 607
NlaIII	CATG	9 cut(s)	88, 209, 516, 520, 532, 650, 674, 683, 710
NlaIV	GGNNCC	1 cut(s)	446
NsbI	TGCGCA	1 cut(s)	548
NsiI	ATGCAT	2 cut(s)	518, 538
NspI	RCATGY	1 cut(s)	520
PagI	TCATGA	1 cut(s)	679
PciSI	GCTCTTC	1 cut(s)	681
PctI	GAATGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	2 cut(s)	283, 565
PflMI	CCANNNNNTGG	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	718, 764
PleI	GAGTC	2 cut(s)	179, 241
PpsI	GAGTC	2 cut(s)	179, 241
Psp6I	CCWGG	3 cut(s)	12, 110, 450
PspGI	CCWGG	3 cut(s)	12, 110, 450
PspN4I	GGNNCC	1 cut(s)	446
PspPI	GGNCC	3 cut(s)	75, 88, 105
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	1 cut(s)	607
RseI	CAYNNNNRTG	3 cut(s)	531, 705, 711
SapI	GCTCTTC	1 cut(s)	681
SatI	GCNGC	2 cut(s)	717, 763
Sau3AI	GATC	5 cut(s)	7, 353, 466, 586, 607
Sau96I	GGNCC	3 cut(s)	75, 88, 105
SchI	GAGTC	2 cut(s)	179, 241
ScrFI	CCNGG	3 cut(s)	14, 112, 452
SexAI	ACCWGGT	1 cut(s)	450
SfaNI	GCATC	3 cut(s)	409, 523, 558
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	2 cut(s)	88, 105
SmiMI	CAYNNNNRTG	3 cut(s)	531, 705, 711
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	2 cut(s)	141, 315
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	3 cut(s)	12, 110, 450
TaaI	ACNGT	4 cut(s)	28, 68, 481, 704
TaiI	ACGT	2 cut(s)	42, 120
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	141, 315
TfiI	GAWTC	2 cut(s)	283, 565
TscAI	CASTG	2 cut(s)	71, 484
TseI	GCWGC	2 cut(s)	716, 762
TspDTI	ATGAA	6 cut(s)	73, 194, 350, 663, 668, 696
TspRI	CASTG	2 cut(s)	71, 484
Van91I	CCANNNNNTGG	1 cut(s)	454
VpaK11BI	GGWCC	2 cut(s)	88, 105
XceI	RCATGY	1 cut(s)	520
XmnI	GAANNNNTTC	1 cut(s)	282
XspI	CTAG	1 cut(s)	351
ZraI	GACGTC	1 cut(s)	40
Zsp2I	ATGCAT	2 cut(s)	518, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.