Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

16710647 .. 16711451

Gene Structure 805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17782

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTTCTCAGTGAAGTCAAGGCTGACGACGTCAAGGTCATACCGACGAACAAGCACTGCGAGTGGGCCGATTTCATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGGCAAGAACATCACCCAAGCCCTGATTTACAAGGCAGCTCAGCGCGTGGTGCTTCCCACTGTTGAAGGGCAAGAGGGAGGCAAGTGGATTGTCATTGACTCTGGTTTGTGCTCTGCTCTTTGGTGTATCATCGTTGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

83

Amino Acids

9.13

Weight (kDa)

7.73

Isoelectric Point (pI)

18.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	2 - 71	1.2e-12	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AatII	GACGTC	1 cut(s)	33
AccII	CGCG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	3 cut(s)	66, 79, 96
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	79, 96
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	103
BisI	GCNGC	1 cut(s)	144
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	2 cut(s)	79, 96
BmgT120I	GGNCC	3 cut(s)	66, 79, 96
BmrFI	CCNGG	1 cut(s)	103
Bpu1102I	GCTNAGC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	30
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	22, 161
BseXI	GCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	93
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp1720I	GCTNAGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	2 cut(s)	21, 160
BspFNI	CGCG	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	8, 147
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	68
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	3 cut(s)	16, 55, 165
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	3 cut(s)	66, 79, 96
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	4 cut(s)	23, 68, 128, 146
CviKI_1	RGCY	4 cut(s)	23, 68, 128, 146
DdeI	CTNAG	2 cut(s)	8, 147
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	79, 96
EcoRII	CCWGG	1 cut(s)	101
FaeI	CATG	1 cut(s)	79
FaiI	YATR	2 cut(s)	41, 77
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	99
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	2 cut(s)	32, 49
HpyAV	CCTTC	2 cut(s)	87, 167
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	2 cut(s)	8, 147
HpySE526I	ACGT	1 cut(s)	30
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	88, 103, 115, 143, 195
Lsp1109I	GCAGC	1 cut(s)	155
MaeII	ACGT	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	221
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	3 cut(s)	92, 175, 179
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	79
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	101
PspPI	GGNCC	3 cut(s)	66, 79, 96
PsyI	GACNNNGTC	1 cut(s)	29
SatI	GCNGC	1 cut(s)	144
Sau96I	GGNCC	3 cut(s)	66, 79, 96
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	5 cut(s)	33, 39, 98, 104, 148
SinI	GGWCC	2 cut(s)	79, 96
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	33
TscAI	CASTG	3 cut(s)	16, 62, 172
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	64
TspRI	CASTG	3 cut(s)	16, 62, 172
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	79, 96
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.