Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Reverse (-)

8142599 .. 8145003

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1112100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTGGCGGCTCTACGATCTCGGTCACTCCCTCTCTCGTCTGCTTCTTCCTCGTCGCTCCTTCAACAATGGAAGCTAGGGCTTCCAGTTGCGCTCTCCACGTTCGCCGGAAGAGGCCTCCTCGATCTCCAAGAGGTCGAGAAGGTTCTCAGCGACGTGAAGGCCGACGACGTGAAGGTCATACCGGCGGATAAGCACTGCGAATGGGCCGATTTCATGGTTCTTGCCACCGGAAGGTCCACGTGGCACGTCAAGAACATCGCTCAGGCCCTAATTTACAAGTCTAAGCAAAAGCAACAAGGAGCTGAGCGGTTAGTGCTTCCCAGTGTGGAAGGGCAAGAAGGAGGAAAGTGGATTGTCATTGACTCTGGCAAAGTGATAGTTCATGCTCTTGATGAGAACGCTAGAGCTTATTACAATTTGGAGGCTCTTTGGACCTCGAAGAAGTCGGAAAAAGAAACATTGGAGGATTTGGACAAGGCTTTTGTGAAGATTCGTCCCAAGAACAACTGCAAGAGGAAACCGACAACGAAACGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

181

Amino Acids

20.04

Weight (kDa)

9.49

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	45 - 145	1.4e-25	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	310
AciI	CCGC	3 cut(s)	8, 188, 310
AcvI	CACGTG	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	65
AjiI	CACGTC	3 cut(s)	157, 172, 250
AluBI	AGCT	3 cut(s)	76, 305, 410
AluI	AGCT	3 cut(s)	76, 305, 410
AoxI	GGCC	4 cut(s)	115, 162, 207, 267
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	4 cut(s)	207, 237, 268, 435
AvaII	GGWCC	2 cut(s)	237, 435
BbrPI	CACGTG	1 cut(s)	243
BfaI	CTAG	2 cut(s)	77, 405
BisI	GCNGC	1 cut(s)	9
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	10
Bme18I	GGWCC	2 cut(s)	237, 435
BmgBI	CACGTC	3 cut(s)	157, 172, 250
BmgT120I	GGNCC	4 cut(s)	207, 237, 268, 435
BmrI	ACTGGG	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	318
BplI	GAGNNNNNCTC	2 cut(s)	105, 137
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	86, 324
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	3 cut(s)	163, 278, 297
BseNI	ACTGG	2 cut(s)	86, 324
BseRI	GAGGAG	1 cut(s)	110
BshFI	GGCC	4 cut(s)	117, 164, 209, 269
BsiSI	CCGG	3 cut(s)	108, 185, 231
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	4 cut(s)	117, 164, 209, 269
Bsp143I	GATC	2 cut(s)	17, 124
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	3 cut(s)	8, 188, 310
BspANI	GGCC	4 cut(s)	117, 164, 209, 269
BspCNI	CTCAG	3 cut(s)	162, 277, 298
BsrBI	CCGCTC	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	86, 324
BssAI	RCCGGY	1 cut(s)	184
BssMI	GATC	2 cut(s)	17, 124
Bst6I	CTCTTC	1 cut(s)	106
BstBAI	YACGTR	1 cut(s)	243
BstDEI	CTNAG	4 cut(s)	149, 264, 285, 306
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	2 cut(s)	20, 127
BstMBI	GATC	2 cut(s)	17, 124
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	117, 164, 209, 269
BtgZI	GCGATG	1 cut(s)	244
BtrI	CACGTC	3 cut(s)	157, 172, 250
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	196, 331
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	4 cut(s)	207, 237, 268, 435
CviAII	CATG	2 cut(s)	217, 386
DdeI	CTNAG	4 cut(s)	149, 264, 285, 306
DpnI	GATC	2 cut(s)	19, 126
DpnII	GATC	2 cut(s)	17, 124
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	237, 435
Eco72I	CACGTG	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	268
FaeI	CATG	2 cut(s)	220, 389
FaiI	YATR	4 cut(s)	182, 218, 387, 541
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	2 cut(s)	216, 385
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	2 cut(s)	77, 405
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	4 cut(s)	117, 164, 209, 269
HapII	CCGG	3 cut(s)	108, 185, 231
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	220, 389
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	2 cut(s)	365, 493
HpaII	CCGG	3 cut(s)	108, 185, 231
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	3 cut(s)	139, 253, 392
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	4 cut(s)	58, 158, 170, 173
HpyAV	CCTTC	7 cut(s)	71, 136, 154, 169, 228, 326, 335
HpyCH4IV	ACGT	5 cut(s)	101, 156, 171, 242, 249
HpyCH4V	TGCA	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	4 cut(s)	149, 264, 285, 306
HpySE526I	ACGT	5 cut(s)	101, 156, 171, 242, 249
Hsp92II	CATG	2 cut(s)	220, 389
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	2 cut(s)	17, 124
LmnI	GCTCC	2 cut(s)	63, 302
LpnPI	CCDG	7 cut(s)	99, 121, 198, 244, 251, 337, 354
MaeI	CTAG	2 cut(s)	77, 405
MaeII	ACGT	5 cut(s)	101, 156, 171, 242, 249
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	2 cut(s)	19, 126
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	2 cut(s)	17, 124
MboII	GAAGA	4 cut(s)	39, 123, 454, 502
MluCI	AATT	2 cut(s)	273, 418
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	429
MspI	CCGG	3 cut(s)	108, 185, 231
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	2 cut(s)	17, 124
NlaIII	CATG	2 cut(s)	220, 389
NmuCI	GTSAC	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	359
PmaCI	CACGTG	1 cut(s)	243
PmlI	CACGTG	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	359
Ppu21I	YACGTR	1 cut(s)	243
PspCI	CACGTG	1 cut(s)	243
PspPI	GGNCC	4 cut(s)	207, 237, 268, 435
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	17, 124
Sau96I	GGNCC	4 cut(s)	207, 237, 268, 435
SchI	GAGTC	1 cut(s)	359
SinI	GGWCC	2 cut(s)	237, 435
Sse9I	AATT	2 cut(s)	273, 418
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	3 cut(s)	8, 188, 310
SspMI	CTAG	2 cut(s)	77, 405
StuI	AGGCCT	1 cut(s)	117
TaiI	ACGT	5 cut(s)	104, 159, 174, 245, 252
TaqI	TCGA	3 cut(s)	123, 138, 440
TaqII	GACCGA	1 cut(s)	12
TasI	AATT	2 cut(s)	273, 418
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	493
TscAI	CASTG	2 cut(s)	203, 331
TseFI	GTSAC	1 cut(s)	24
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	2 cut(s)	205, 374
TspRI	CASTG	2 cut(s)	203, 331
VpaK11BI	GGWCC	2 cut(s)	237, 435
XspI	CTAG	2 cut(s)	77, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.