Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

22049190 .. 22052864

Gene Structure 3675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG217500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTCCTCGCCACCGGAAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGGCAGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGAACCAATTCAGGATTGGTTGAGGTTTAGTGTTGCATTTTGGCACACATTCCGTGGAACAGGAGCTGATCCATTCGGTGCGCCTACAAAAAATTGGCATTGGGTGGATGGAACTTATAACTCTGTTGCTATGGCCAAGAGAAGAAAGATGGTTAAAACATCATCACAACTTAGGACGAAAACAGCAAAGCTGAAGAAGCGAAACAGAATAAGACAGATAAGATCTACAACCGATACAAAGATTCATCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

135

Amino Acids

15.61

Weight (kDa)

10.53

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	18
AjiI	CACGTC	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	26
AluBI	AGCT	3 cut(s)	110, 221, 346
AluI	AGCT	3 cut(s)	110, 221, 346
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	4, 21
AvaII	GGWCC	2 cut(s)	4, 21
BalI	TGGCCA	1 cut(s)	290
BccI	CCATC	2 cut(s)	257, 298
BceAI	ACGGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	119
BglII	AGATCT	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	2 cut(s)	4, 21
BmgBI	CACGTC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	4, 21
BmrFI	CCNGG	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	28
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	223, 377
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	223, 377
Bst2UI	CCWGG	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	150, 326
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	2 cut(s)	226, 380
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	2 cut(s)	223, 377
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstNI	CCWGG	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	268
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	4, 21
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	6 cut(s)	53, 110, 145, 221, 290, 346
CviKI_1	RGCY	6 cut(s)	53, 110, 145, 221, 290, 346
DdeI	CTNAG	2 cut(s)	150, 326
DpnI	GATC	2 cut(s)	225, 379
DpnII	GATC	2 cut(s)	223, 377
EaeI	YGGCCR	1 cut(s)	288
Eco47I	GGWCC	2 cut(s)	4, 21
Eco57I	CTGAAG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	26
FaeI	CATG	1 cut(s)	89
FaiI	YATR	3 cut(s)	87, 273, 287
FatI	CATG	1 cut(s)	85
FokI	GGATG	1 cut(s)	275
GlaI	GCGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	2 cut(s)	127, 397
HpaII	CCGG	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	4 cut(s)	37, 92, 122, 167
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	1 cut(s)	12
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	2 cut(s)	150, 326
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	2 cut(s)	223, 377
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	7 cut(s)	13, 28, 40, 54, 107, 152, 201
MaeII	ACGT	1 cut(s)	33
MalI	GATC	2 cut(s)	225, 379
MboI	GATC	2 cut(s)	223, 377
MboII	GAAGA	2 cut(s)	309, 361
MflI	RGATCY	1 cut(s)	377
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	3 cut(s)	57, 162, 247
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	2 cut(s)	17, 171
Mox20I	TGGCCA	1 cut(s)	290
MroXI	GAANNNNTTC	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	290
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	2 cut(s)	223, 377
NlaIII	CATG	1 cut(s)	89
PctI	GAATGC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	4, 21
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	223, 377
Sau96I	GGNCC	2 cut(s)	4, 21
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	7 cut(s)	23, 29, 36, 112, 182, 223, 348
SinI	GGWCC	2 cut(s)	4, 21
Sse9I	AATT	3 cut(s)	57, 162, 247
StyD4I	CCNGG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	36
TasI	AATT	3 cut(s)	57, 162, 247
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TspDTI	ATGAA	2 cut(s)	74, 389
TspGWI	ACGGA	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	4, 21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.