Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

37272961 .. 37296603

Gene Structure 23643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG169800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGATACGAAAATTAAAATAAAAGCCCAATATAAAGCAGAGGAAAATGTATCCATGTGTTTGACATCTTTCTTTGTTGAAAGGGAAAAACTCTCTTCCTCAGGATCTCTCAGACTTTTTCCATCTAAGAAAAAGCAGAAAGGAGCTCAGCGCGTGGTGCTTCCCACTGTTGAAGGGCAAGAGGGAGGCAAGTGGATTGTCATTGACTCTGGGAAAGTGATAGTTCATGCTCTTGATGAGAATGCTAAAGCTTACTACAATCTGGAGACTCTTTGGACAACAAAGCCGTCTGAGAAAGAACCAATTCAGGTAATCAAACCCAAATTAATCAATCATAAATCCACCAAGTATGTTAAACAAAAAAACAATCTTGAAAATGCACAAAAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

130

Amino Acids

14.79

Weight (kDa)

9.69

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	47 - 92	6.6e-11	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	153
AclWI	GGATC	1 cut(s)	112
AgsI	TTSAA	3 cut(s)	80, 173, 374
AluBI	AGCT	3 cut(s)	146, 251, 388
AluI	AGCT	3 cut(s)	146, 251, 388
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	112
AseI	ATTAAT	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	153
AxyI	CCTNAGG	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BccI	CCATC	1 cut(s)	130
BceAI	ACGGC	1 cut(s)	271
BciVI	GTATCC	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	61
BlpI	GCTNAGC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	284
Bpu1102I	GCTNAGC	1 cut(s)	147
Bse21I	CCTNAGG	1 cut(s)	100
BseMII	CTCAG	4 cut(s)	114, 124, 161, 282
Bsh1236I	CGCG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	104
Bsp1720I	GCTNAGC	1 cut(s)	147
BspCNI	CTCAG	4 cut(s)	113, 123, 160, 283
BspFNI	CGCG	1 cut(s)	153
BspPI	GGATC	1 cut(s)	112
BssMI	GATC	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	1 cut(s)	100
BstDEI	CTNAG	5 cut(s)	100, 110, 126, 147, 291
BstFNI	CGCG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
Bsu36I	CCTNAGG	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	165
CfoI	GCGC	1 cut(s)	153
CviAII	CATG	2 cut(s)	55, 227
CviJI	RGCY	5 cut(s)	26, 146, 251, 286, 388
CviKI_1	RGCY	5 cut(s)	26, 146, 251, 286, 388
DdeI	CTNAG	5 cut(s)	100, 110, 126, 147, 291
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	146
Eco81I	CCTNAGG	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	148
FaeI	CATG	2 cut(s)	58, 230
FaiI	YATR	6 cut(s)	33, 56, 228, 336, 351, 391
FatI	CATG	2 cut(s)	54, 226
FriOI	GRGCYC	1 cut(s)	148
GlaI	GCGC	1 cut(s)	152
GsuI	CTGGAG	1 cut(s)	284
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	58, 230
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	2 cut(s)	206, 268
Hpy188I	TCNGA	2 cut(s)	113, 292
Hpy188III	TCNNGA	4 cut(s)	102, 233, 263, 371
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	5 cut(s)	100, 110, 126, 147, 291
Hsp92II	CATG	2 cut(s)	58, 230
HspAI	GCGC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	4 cut(s)	87, 195, 248, 293
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	87
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	3 cut(s)	12, 303, 323
MlyI	GAGTC	2 cut(s)	200, 262
MnlI	CCTC	4 cut(s)	34, 109, 175, 179
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	3 cut(s)	15, 326, 354
Mva1269I	GAATGC	1 cut(s)	247
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	2 cut(s)	58, 230
PctI	GAATGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	303
PleI	GAGTC	2 cut(s)	200, 262
PpsI	GAGTC	2 cut(s)	200, 262
PshBI	ATTAAT	1 cut(s)	326
Psp124BI	GAGCTC	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	15, 326, 354
Sau3AI	GATC	1 cut(s)	104
SchI	GAGTC	2 cut(s)	200, 262
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	4 cut(s)	148, 253, 312, 390
Sse9I	AATT	3 cut(s)	12, 303, 323
SstI	GAGCTC	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	169
TasI	AATT	3 cut(s)	12, 303, 323
Tru1I	TTAA	3 cut(s)	15, 326, 354
Tru9I	TTAA	3 cut(s)	15, 326, 354
TscAI	CASTG	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	172
VspI	ATTAAT	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.