Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002364

Physical Location & Seq

Genomic Coordinates Forward (+)

26549460 .. 26552288

Gene Structure 2829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24330.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTTGGCCGCTCTACGCTCCCGATCGTCGTCCTCACTGCTCCTTCAACAATGGAGGCTAGGGTTTCCATCTCTGCACCAAACCTTCACCTCCGCCGCCGCCAACGAAGGCCTGCTTGATCTCCACGAGGTCGAGAGAGTTCTCAGCGACGTCAAGGCCGACGACGTCAAGGTCATACCGGCGAACAACCACTCCGAGTGGGCCGATTTCATGGTCCTCGCCACCGGGAGGTCCACCTGGCACGTCAAGAACATCGCCCAAGCCCTAATTTACAAGGCAGGCGAAAGGCTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043021 GO:0043023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0080090 GO:0090069 GO:0090071 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RsfS

Protein Analysis

99

Amino Acids

10.93

Weight (kDa)

6.91

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RsfS	PF02410	44 - 143	2.3e-25	Ribosomal silencing factor during starvation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67620
fragaria_vesca	FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330 FvH4_4g24330
malus_domestica	MD13G1112100.v1.1 MD16G1111700.v1.1
prunus_persica	Prupe.1G233300_v2.0.a1
pyrus_communis	pycom13g09750 pycom16g09470
rosa_chinensis	RchiOBHm_Chr1g0343341 RchiOBHm_Chr1g0366581 RchiOBHm_Chr3g0456071 RchiOBHm_Chr4g0431131 RchiOBHm_Chr7g0183971 RchiOBHm_Chr7g0198741
rosa_laevigata	RLG00000006921
rosa_multiflora	Rmu_sc0005258.1_g000002 Rmu_sc0014629.1_g000007 Rmu_sc0023228.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015160 Rroxscaffold_5G00372730 Rroxscaffold_7G00210320
rosa_rugosa	Rorug04G0248600
rosa_samantha	Rh1CG146700 Rh1CG169800 Rh3AG217500 Rh3DG326500 Rh4AG304900 Rh4BG312100 Rh4CG328400 Rh4DG308700 Rh5AG537300 Rh6BG131200 Rh6DG116800
rosa_wichuraiana	Rw1G009740 Rw4G026500 Rw5G039480 Rw6G009530 Rw6G012160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AatII	GACGTC	2 cut(s)	153, 168
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	4 cut(s)	9, 93, 96, 99
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	2 cut(s)	150, 165
AfiI	CCNNNNNNNGG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	47
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	236
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AoxI	GGCC	4 cut(s)	6, 109, 156, 201
Asp700I	GAANNNNTTC	1 cut(s)	288
AspS9I	GGNCC	3 cut(s)	201, 214, 231
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	2 cut(s)	214, 231
BauI	CACGAG	1 cut(s)	125
BccI	CCATC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	226
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	3 cut(s)	9, 96, 99
BlsI	GCNGC	3 cut(s)	10, 97, 100
Bme1390I	CCNGG	2 cut(s)	226, 238
Bme18I	GGWCC	2 cut(s)	214, 231
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	201, 214, 231
BmrFI	CCNGG	2 cut(s)	226, 238
BpuMI	CCSGG	1 cut(s)	226
BsaHI	GRCGYC	2 cut(s)	150, 165
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	59
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	4 cut(s)	8, 111, 158, 203
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	179, 225
BslI	CCNNNNNNNGG	1 cut(s)	228
BsnI	GGCC	4 cut(s)	8, 111, 158, 203
Bsp143I	GATC	2 cut(s)	23, 118
BspACI	CCGC	4 cut(s)	9, 93, 96, 99
BspANI	GGCC	4 cut(s)	8, 111, 158, 203
BspCNI	CTCAG	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssMI	GATC	2 cut(s)	23, 118
BssNI	GRCGYC	2 cut(s)	150, 165
BssSI	CACGAG	1 cut(s)	125
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	238
BstACI	GRCGYC	2 cut(s)	150, 165
BstC8I	GCNNGC	2 cut(s)	113, 280
BstDEI	CTNAG	1 cut(s)	143
BstKTI	GATC	2 cut(s)	26, 121
BstMBI	GATC	2 cut(s)	23, 118
BstMCI	CGRYCG	1 cut(s)	26
BstNI	CCWGG	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	224, 236
BsuRI	GGCC	4 cut(s)	8, 111, 158, 203
BtgZI	GCGATG	1 cut(s)	238
BtrI	CACGTC	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	113, 280
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	3 cut(s)	201, 214, 231
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	7 cut(s)	8, 58, 111, 158, 203, 263, 289
CviKI_1	RGCY	7 cut(s)	8, 58, 111, 158, 203, 263, 289
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	2 cut(s)	25, 120
DpnII	GATC	2 cut(s)	23, 118
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	214, 231
Eco57I	CTGAAG	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	236
FaeI	CATG	1 cut(s)	214
FaiI	YATR	2 cut(s)	176, 212
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	1 cut(s)	210
Fnu4HI	GCNGC	3 cut(s)	9, 96, 99
Fsp4HI	GCNGC	3 cut(s)	9, 96, 99
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	3 cut(s)	9, 96, 99
HaeIII	GGCC	4 cut(s)	8, 111, 158, 203
HapII	CCGG	2 cut(s)	179, 225
Hin1I	GRCGYC	2 cut(s)	150, 165
Hin1II	CATG	1 cut(s)	214
HpaII	CCGG	2 cut(s)	179, 225
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	21, 133, 247
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	4 cut(s)	31, 152, 164, 167
HpyAV	CCTTC	3 cut(s)	53, 94, 101
HpyCH4IV	ACGT	3 cut(s)	150, 165, 243
HpyCH4V	TGCA	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	3 cut(s)	150, 165, 243
Hsp92I	GRCGYC	2 cut(s)	150, 165
Hsp92II	CATG	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	23, 118
LmnI	GCTCC	2 cut(s)	23, 45
LpnPI	CCDG	6 cut(s)	125, 192, 223, 238, 250, 264
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	3 cut(s)	150, 165, 243
MalI	GATC	2 cut(s)	25, 120
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	2 cut(s)	23, 118
MluCI	AATT	1 cut(s)	267
MnlI	CCTC	6 cut(s)	43, 48, 100, 121, 222, 227
MroXI	GAANNNNTTC	1 cut(s)	288
MspI	CCGG	2 cut(s)	179, 225
MspR9I	CCNGG	2 cut(s)	226, 238
MvaI	CCWGG	1 cut(s)	238
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	23, 118
NlaIII	CATG	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	288
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	10, 97, 100
Ple19I	CGATCG	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	236
PspGI	CCWGG	1 cut(s)	236
PspPI	GGNCC	3 cut(s)	201, 214, 231
PsyI	GACNNNGTC	1 cut(s)	164
PvuI	CGATCG	1 cut(s)	26
SatI	GCNGC	3 cut(s)	9, 96, 99
Sau3AI	GATC	2 cut(s)	23, 118
Sau96I	GGNCC	3 cut(s)	201, 214, 231
ScrFI	CCNGG	2 cut(s)	226, 238
SetI	ASST	9 cut(s)	86, 92, 132, 153, 168, 174, 233, 239, 246
SinI	GGWCC	2 cut(s)	214, 231
Sse9I	AATT	1 cut(s)	267
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	4 cut(s)	9, 93, 96, 99
SspMI	CTAG	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	224, 236
TaiI	ACGT	3 cut(s)	153, 168, 246
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	267
TauI	GCSGC	3 cut(s)	11, 98, 101
TscAI	CASTG	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	199
TspRI	CASTG	1 cut(s)	42
Tth111I	GACNNNGTC	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	214, 231
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	59
ZraI	GACGTC	2 cut(s)	151, 166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.