AT1G68840
ERF Family

AP2 ERF and B3 domain-containing transcription repressor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
25880155 .. 25882222
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68840.2

Sequence Viewer

Length: 1059 bp
ATGGATTCTAGTTGCATAGACGAGATAAGTTCCTCCACTTCAGAATCTTTCTCCGCCACCACCGCCAAGAAGCTCTCTCCTCCTCCCGCGGCGGCGTTACGCCTCTACCGGATGGGAAGCGGCGGGAGCAGCGTCGTGTTGGATCCCGAGAACGGCCTAGAGACGGAGTCACGAAAGCTACCATCTTCAAAATACAAAGGTGTTGTTCCTCAGCCTAACGGAAGATGGGGAGCTCAGATCTACGAGAAGCACCAACGAGTATGGCTCGGGACTTTCAACGAGCAAGAAGAAGCTGCTCGTTCCTACGACATCGCAGCTTGTAGATTCCGTGGCCGCGACGCCGTCGTCAACTTCAAGAACGTTCTGGAAGACGGCGATTTAGCTTTTCTTGAAGCTCACTCAAAGGCCGAGATCGTCGACATGTTGAGAAAACACACTTACGCCGACGAGCTTGAACAGAACAATAAACGGCAGTTGTTTCTCTCCGTCGACGCTAACGGAAAACGTAACGGATCGAGTACTACTCAAAACGACAAAGTTTTAAAGACGCGTGAAGTTCTTTTCGAGAAGGCTGTTACACCTAGCGACGTTGGGAAGCTAAACCGTCTCGTGATACCTAAACAACACGCCGAGAAACACTTTCCGTTACCGTCACCGTCACCGGCAGTGACTAAAGGAGTTTTGATCAACTTCGAAGACGTTAACGGTAAAGTGTGGAGGTTCCGTTACTCATACTGGAACAGTAGTCAAAGTTACGTGTTGACCAAGGGATGGAGTCGATTCGTCAAGGAGAAGAATCTTCGAGCCGGTGATGTTGTTACTTTCGAGAGATCGACCGGACTAGAGCGGCAGTTATATATTGATTGGAAAGTTCGGTCTGGTCCGAGAGAAAACCCGGTTCAGGTGGTGGTTCGGCTTTTCGGAGTTGATATCTTTAATGTGACCACCGTGAAGCCAAACGACGTCGTGGCCGTTTGCGGTGGAAAGAGATCTCGAGATGTTGATGATATGTTTGCGTTACGGTGTTCCAAGAAGCAGGCGATAATCAATGCTTTGTGA

Protein Analysis

352

Amino Acids

39.49

Weight (kDa)

9.39

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 63 - 111 5.1e-09 AP2 domain
B3 PF02362 188 - 286 9.7e-28 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AatII GACGTC 1 cut(s) 966
AccB7I CCANNNNNTGG 1 cut(s) 771
AccBSI CCGCTC 1 cut(s) 847
AccI GTMKAC 2 cut(s) 417, 489
AccII CGCG 3 cut(s) 89, 336, 550
AclI AACGTT 1 cut(s) 360
AclWI GGATC 3 cut(s) 137, 150, 520
AcoI YGGCCR 2 cut(s) 331, 969
AcuI CTGAAG 1 cut(s) 24
AcyI GRCGYC 2 cut(s) 339, 963
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 4 cut(s) 152, 163, 771, 901
AflIII ACRYGT 3 cut(s) 420, 548, 756
AgsI TTSAA 5 cut(s) 189, 277, 355, 392, 455
AluBI AGCT 9 cut(s) 73, 178, 233, 293, 317, 383, 395, 451, 598
AluI AGCT 9 cut(s) 73, 178, 233, 293, 317, 383, 395, 451, 598
Alw21I GWGCWC 1 cut(s) 235
Alw26I GTCTC 2 cut(s) 155, 611
AlwI GGATC 3 cut(s) 137, 150, 520
Ama87I CYCGRG 3 cut(s) 146, 266, 993
AoxI GGCC 4 cut(s) 154, 331, 405, 969
ApeKI GCWGC 3 cut(s) 129, 293, 314
AspS9I GGNCC 1 cut(s) 881
AsuC2I CCSGG 1 cut(s) 896
AsuHPI GGTGA 3 cut(s) 645, 651, 821
AsuII TTCGAA 1 cut(s) 693
AvaI CYCGRG 3 cut(s) 146, 266, 993
AvaII GGWCC 1 cut(s) 881
BamHI GGATCC 1 cut(s) 142
BanII GRGCYC 1 cut(s) 235
BauI CACGAG 1 cut(s) 608
BbsI GAAGAC 2 cut(s) 375, 702
Bbv12I GWGCWC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 141, 280, 326
BccI CCATC 4 cut(s) 106, 190, 219, 765
BceAI ACGGC 5 cut(s) 169, 326, 388, 485, 956
BclI TGATCA 1 cut(s) 684
BcnI CCSGG 1 cut(s) 896
BcoDI GTCTC 2 cut(s) 155, 611
BfaI CTAG 4 cut(s) 9, 158, 582, 842
BglII AGATCT 2 cut(s) 237, 989
BisI GCNGC 8 cut(s) 90, 93, 121, 130, 294, 315, 334, 848
BlsI GCNGC 8 cut(s) 91, 94, 122, 131, 295, 316, 335, 849
BmcAI AGTACT 1 cut(s) 520
Bme1390I CCNGG 1 cut(s) 896
Bme18I GGWCC 1 cut(s) 881
BmeT110I CYCGRG 3 cut(s) 146, 266, 993
BmgT120I GGNCC 1 cut(s) 881
BmiI GGNNCC 2 cut(s) 144, 722
BmrFI CCNGG 1 cut(s) 896
BpiI GAAGAC 2 cut(s) 375, 702
BplI GAGNNNNNCTC 4 cut(s) 249, 281, 508, 540
Bpu10I CCTNAGC 1 cut(s) 210
Bpu14I TTCGAA 1 cut(s) 693
BpuMI CCSGG 1 cut(s) 896
BsaAI YACGTR 1 cut(s) 757
BsaHI GRCGYC 2 cut(s) 339, 963
BsaJI CCNNGG 3 cut(s) 87, 328, 765
BsaWI WCCGGW 2 cut(s) 108, 836
BsaXI ACNNNNNCTCC 2 cut(s) 709, 739
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 163, 771, 901
Bse118I RCCGGY 2 cut(s) 661, 806
Bse1I ACTGG 1 cut(s) 740
BseDI CCNNGG 3 cut(s) 87, 328, 765
BseGI GGATG 2 cut(s) 117, 776
BseLI CCNNNNNNNGG 4 cut(s) 152, 163, 771, 901
BseMII CTCAG 2 cut(s) 224, 248
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 2 cut(s) 69, 72
BseXI GCAGC 3 cut(s) 141, 280, 326
Bsh1236I CGCG 3 cut(s) 89, 336, 550
Bsh1285I CGRYCG 1 cut(s) 837
BshFI GGCC 4 cut(s) 156, 333, 407, 971
BsiEI CGRYCG 1 cut(s) 837
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 3 cut(s) 146, 266, 993
BsiSI CCGG 5 cut(s) 109, 662, 807, 837, 896
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 4 cut(s) 152, 163, 771, 901
BsmAI GTCTC 2 cut(s) 155, 611
BsmBI CGTCTC 2 cut(s) 155, 611
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 4 cut(s) 156, 333, 407, 971
BsoBI CYCGRG 3 cut(s) 146, 266, 993
Bsp119I TTCGAA 1 cut(s) 693
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 7 cut(s) 142, 237, 411, 512, 684, 830, 989
BspANI GGCC 4 cut(s) 156, 333, 407, 971
BspCNI CTCAG 2 cut(s) 223, 247
BspFNI CGCG 3 cut(s) 89, 336, 550
BspLI GGNNCC 2 cut(s) 144, 722
BspPI GGATC 3 cut(s) 137, 150, 520
BspT104I TTCGAA 1 cut(s) 693
BsrBI CCGCTC 1 cut(s) 847
BsrFI RCCGGY 2 cut(s) 661, 806
BsrI ACTGG 1 cut(s) 740
BssAI RCCGGY 2 cut(s) 661, 806
BssECI CCNNGG 3 cut(s) 87, 328, 765
BssMI GATC 7 cut(s) 142, 237, 411, 512, 684, 830, 989
BssNI GRCGYC 2 cut(s) 339, 963
BssSI CACGAG 1 cut(s) 608
BssT1I CCWWGG 1 cut(s) 765
Bst2BI CACGAG 1 cut(s) 608
Bst4CI ACNGT 7 cut(s) 605, 651, 657, 707, 743, 949, 1023
BstACI GRCGYC 2 cut(s) 339, 963
BstBAI YACGTR 1 cut(s) 757
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 1038
BstDEI CTNAG 2 cut(s) 210, 234
BstDSI CCRYGG 2 cut(s) 87, 328
BstF5I GGATG 2 cut(s) 117, 776
BstFNI CGCG 3 cut(s) 89, 336, 550
BstKTI GATC 7 cut(s) 145, 240, 414, 515, 687, 833, 992
BstMAI GTCTC 2 cut(s) 155, 611
BstMBI GATC 7 cut(s) 142, 237, 411, 512, 684, 830, 989
BstMCI CGRYCG 1 cut(s) 837
BstMWI GCNNNNNNNGC 3 cut(s) 62, 126, 129
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 894
BstUI CGCG 3 cut(s) 89, 336, 550
BstV1I GCAGC 3 cut(s) 141, 280, 326
BstV2I GAAGAC 2 cut(s) 375, 702
BstX2I RGATCY 3 cut(s) 142, 237, 989
BstYI RGATCY 3 cut(s) 142, 237, 989
BsuRI GGCC 4 cut(s) 156, 333, 407, 971
BtgI CCRYGG 2 cut(s) 87, 328
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 2 cut(s) 117, 776
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 1 cut(s) 1038
Cfr10I RCCGGY 2 cut(s) 661, 806
Cfr13I GGNCC 1 cut(s) 881
Cfr42I CCGCGG 1 cut(s) 90
CseI GACGC 4 cut(s) 121, 347, 500, 556
Csp6I GTAC 1 cut(s) 519
CviAII CATG 1 cut(s) 421
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 2 cut(s) 210, 234
DpnI GATC 7 cut(s) 144, 239, 413, 514, 686, 832, 991
DpnII GATC 7 cut(s) 142, 237, 411, 512, 684, 830, 989
DraI TTTAAA 1 cut(s) 543
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 2 cut(s) 331, 969
EciI GGCGGA 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 765
Eco24I GRGCYC 1 cut(s) 235
Eco32I GATATC 1 cut(s) 931
Eco47I GGWCC 1 cut(s) 881
Eco53kI GAGCTC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 24
Eco88I CYCGRG 3 cut(s) 146, 266, 993
EcoICRI GAGCTC 1 cut(s) 233
EcoRV GATATC 1 cut(s) 931
EcoT14I CCWWGG 1 cut(s) 765
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 765
Esp3I CGTCTC 2 cut(s) 155, 611
FaeI CATG 1 cut(s) 424
FaiI YATR 7 cut(s) 17, 262, 422, 733, 856, 858, 1010
FaqI GGGAC 1 cut(s) 283
FatI CATG 1 cut(s) 420
FauI CCCGC 2 cut(s) 94, 116
FbaI TGATCA 1 cut(s) 684
FblI GTMKAC 2 cut(s) 417, 489
Fnu4HI GCNGC 8 cut(s) 90, 93, 121, 130, 294, 315, 334, 848
FokI GGATG 2 cut(s) 124, 783
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 8 cut(s) 90, 93, 121, 130, 294, 315, 334, 848
FspBI CTAG 4 cut(s) 9, 158, 582, 842
GluI GCNGC 8 cut(s) 90, 93, 121, 130, 294, 315, 334, 848
HaeIII GGCC 4 cut(s) 156, 333, 407, 971
HapII CCGG 5 cut(s) 109, 662, 807, 837, 896
HgaI GACGC 4 cut(s) 121, 347, 500, 556
Hin1I GRCGYC 2 cut(s) 339, 963
Hin1II CATG 1 cut(s) 424
HincII GTYRAC 5 cut(s) 349, 418, 490, 703, 762
HindII GTYRAC 5 cut(s) 349, 418, 490, 703, 762
HinfI GANTC 7 cut(s) 5, 44, 167, 324, 775, 780, 796
HpaI GTTAAC 1 cut(s) 703
HpaII CCGG 5 cut(s) 109, 662, 807, 837, 896
HphI GGTGA 3 cut(s) 645, 651, 821
Hpy166II GTNNAC 5 cut(s) 349, 418, 490, 703, 762
Hpy188I TCNGA 4 cut(s) 43, 237, 885, 923
Hpy8I GTNNAC 5 cut(s) 349, 418, 490, 703, 762
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 7 cut(s) 605, 651, 657, 707, 743, 949, 1023
HpyCH4IV ACGT 6 cut(s) 360, 505, 588, 699, 756, 963
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 126, 129
HpyF3I CTNAG 2 cut(s) 210, 234
HpySE526I ACGT 6 cut(s) 360, 505, 588, 699, 756, 963
Hsp92I GRCGYC 2 cut(s) 339, 963
Hsp92II CATG 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 684
KspAI GTTAAC 1 cut(s) 703
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 7 cut(s) 142, 237, 411, 512, 684, 830, 989
LmnI GCTCC 2 cut(s) 126, 230
Lsp1109I GCAGC 3 cut(s) 141, 280, 326
MaeI CTAG 4 cut(s) 9, 158, 582, 842
MaeII ACGT 6 cut(s) 360, 505, 588, 699, 756, 963
MalI GATC 7 cut(s) 144, 239, 413, 514, 686, 832, 991
MbiI CCGCTC 1 cut(s) 847
MboI GATC 7 cut(s) 142, 237, 411, 512, 684, 830, 989
MboII GAAGA 7 cut(s) 177, 234, 299, 380, 707, 791, 805
MflI RGATCY 3 cut(s) 142, 237, 989
MhlI GDGCHC 1 cut(s) 235
MluI ACGCGT 1 cut(s) 548
MlyI GAGTC 2 cut(s) 176, 784
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 6 cut(s) 43, 90, 93, 113, 219, 711
MseI TTAA 3 cut(s) 542, 702, 936
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 5 cut(s) 109, 662, 807, 837, 896
MspR9I CCNGG 1 cut(s) 896
MvnI CGCG 3 cut(s) 89, 336, 550
MwoI GCNNNNNNNGC 3 cut(s) 62, 126, 129
NciI CCSGG 1 cut(s) 896
NdeII GATC 7 cut(s) 142, 237, 411, 512, 684, 830, 989
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 2 cut(s) 144, 722
NmeAIII GCCGAG 2 cut(s) 433, 655
NmuCI GTSAC 5 cut(s) 168, 651, 657, 667, 940
NspI RCATGY 1 cut(s) 424
NspV TTCGAA 1 cut(s) 693
PaeR7I CTCGAG 1 cut(s) 993
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 969
PfeI GAWTC 5 cut(s) 5, 44, 324, 780, 796
PflFI GACNNNGTC 2 cut(s) 166, 341
PflMI CCANNNNNTGG 1 cut(s) 771
PkrI GCNGC 8 cut(s) 91, 94, 122, 131, 295, 316, 335, 849
PleI GAGTC 2 cut(s) 175, 783
PpsI GAGTC 2 cut(s) 175, 783
Ppu21I YACGTR 1 cut(s) 757
PscI ACATGT 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 235
Psp1406I AACGTT 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 144, 722
PspPI GGNCC 1 cut(s) 881
PsuI RGATCY 3 cut(s) 142, 237, 989
PsyI GACNNNGTC 2 cut(s) 166, 341
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
SacI GAGCTC 1 cut(s) 235
SacII CCGCGG 1 cut(s) 90
SalI GTCGAC 2 cut(s) 416, 488
SaqAI TTAA 3 cut(s) 542, 702, 936
SatI GCNGC 8 cut(s) 90, 93, 121, 130, 294, 315, 334, 848
Sau3AI GATC 7 cut(s) 142, 237, 411, 512, 684, 830, 989
Sau96I GGNCC 1 cut(s) 881
ScaI AGTACT 1 cut(s) 520
SchI GAGTC 2 cut(s) 176, 784
ScrFI CCNGG 1 cut(s) 896
SduI GDGCHC 1 cut(s) 235
Sfr274I CTCGAG 1 cut(s) 993
Sfr303I CCGCGG 1 cut(s) 90
SfuI TTCGAA 1 cut(s) 693
SgrBI CCGCGG 1 cut(s) 90
SgrDI CGTCGACG 1 cut(s) 488
SinI GGWCC 1 cut(s) 881
SlaI CTCGAG 1 cut(s) 993
SmlI CTYRAG 1 cut(s) 993
SmoI CTYRAG 1 cut(s) 993
SspMI CTAG 4 cut(s) 9, 158, 582, 842
SstI GAGCTC 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 894
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 7 cut(s) 605, 651, 657, 707, 743, 949, 1023
TaiI ACGT 6 cut(s) 363, 508, 591, 702, 759, 966
TaqII GACCGA 1 cut(s) 864
TatI WGTACW 1 cut(s) 518
TauI GCSGC 5 cut(s) 92, 95, 123, 336, 850
TfiI GAWTC 5 cut(s) 5, 44, 324, 780, 796
Tru1I TTAA 3 cut(s) 542, 702, 936
Tru9I TTAA 3 cut(s) 542, 702, 936
TscAI CASTG 1 cut(s) 672
TseFI GTSAC 5 cut(s) 168, 651, 657, 667, 940
TseI GCWGC 3 cut(s) 129, 293, 314
Tsp45I GTSAC 5 cut(s) 168, 651, 657, 667, 940
TspGWI ACGGA 8 cut(s) 179, 234, 317, 475, 513, 525, 633, 713
TspRI CASTG 1 cut(s) 672
Tth111I GACNNNGTC 2 cut(s) 166, 341
Van91I CCANNNNNTGG 1 cut(s) 771
VpaK11BI GGWCC 1 cut(s) 881
XceI RCATGY 1 cut(s) 424
XhoI CTCGAG 1 cut(s) 993
XmiI GTMKAC 2 cut(s) 417, 489
XspI CTAG 4 cut(s) 9, 158, 582, 842
ZraI GACGTC 1 cut(s) 964
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.