pycom16g04170
ERF Family

AP2 ERF and B3 domain-containing transcription

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
2581667 .. 2582926
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04170.2

Sequence Viewer

Length: 1170 bp
ATGGATGGAATAAGCAGCACAGAAGAGAGCACAACCAGCGACTCCATATCCATTTCGCCACCCCATCATATTGTTACACGTGTGGAGCCACTTGCCAAGTCTGCGCCCCAAGCCGAGTCCCGGAAGCTCCCTTCCTCCAAGTACAAAGGCGTGGTCCCACAGCCCAACGGCCGCTGGGGGGCCCAGATTTACGAGAAGCACCAGCGCGTCTGGCTGGGCACCTTCAACGAAGAGGACGAGGCCGCTAGGGCCTACGACGTTGCTGCACAGCGCTTCCGCGGCCGCGACGCTGTCACCAACTTAAAGCCCTCCTCCGCCGAACCCATTTTCTCTGACGACGAAGAAAACGACGACGTCGAGGCCGTGTTTCTGAGCTCCCACTCCAAGTCTGAAATCGTCGACATGCTGCGAAAGCACACGTACAATGACGAACTGGAACAGAGCAAGCGCAACTACTGCGCTTACGGGAAGCGGGGCCGGTCCAACGGGCCGCTGGGCCTGTTCGGGATGGACAACAGTCGCGTCCAGAAAGCGCGTGAGCAGCTATTCGAGAAAGCCGTGACCCCCAGCGATGTCGGGAAACTGAACCGCCTCGTAATCCCGAAGCAGTATGCCGAAAAGCACTTTCCGTTGCAAAGCGGAAGCACTGCAACCGTAACGGTAAGTGCATCTTCCGCTTGCAAAGGAGTGCTTTTGAATTTTGAGGATGTCGGGGGAAAAGTGTGGAGGTTTCGATACTCCTACTGGAACAGCAGTCAAAGCTACGTGTTGACCAAAGGGTGGAGCCGGTTTGTGAAGGAGAAGAATCTGAAGGCCGGGGACATTGTGAGCTTTCAGAGGTCAACCGGACCGGACAAACAACTGTACATTGATTGGAAGACCAGGATGAGTGTGAATAATAACAGTAATGGGTCGAACCCGGTTCAAGGTCAGGTTGCGCCGGTTCAGATGGTTCGGCTATTTGGGGTCAACATATTCAAAATACCTGGGAGTGTCGGGGCTGGGCCAGTGGATGCTGCAGCTGCCGCTGCTATTGGCGGCGGCTGCAATAATAATATCGGCAAAAGAATGAGAGAGATGGAGTTGTTGAAATTAGAGTTTAGCAAGAAGCCAAGGATCGATCGGAGCTTTGTAGCATTTTTTTTTAATTTTTCTTTGTTTTTTTGTTAG

Protein Analysis

390

Amino Acids

43.3

Weight (kDa)

9.35

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 780
AccI GTMKAC 1 cut(s) 399
AccII CGCG 5 cut(s) 207, 279, 285, 522, 535
AclWI GGATC 1 cut(s) 1124
AcoI YGGCCR 2 cut(s) 169, 280
AcsI RAATTY 1 cut(s) 697
AcuI CTGAAG 1 cut(s) 830
AcvI CACGTG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 3 cut(s) 143, 422, 866
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 4 cut(s) 120, 178, 780, 926
AflIII ACRYGT 4 cut(s) 77, 79, 417, 765
AgsI TTSAA 5 cut(s) 226, 697, 926, 979, 1090
AjnI CCWGG 2 cut(s) 881, 985
AluBI AGCT 7 cut(s) 127, 375, 544, 762, 831, 1022, 1128
AluI AGCT 7 cut(s) 127, 375, 544, 762, 831, 1022, 1128
Alw21I GWGCWC 2 cut(s) 32, 377
AlwI GGATC 1 cut(s) 1124
Aor51HI AGCGCT 1 cut(s) 272
ApaI GGGCCC 1 cut(s) 184
ApeKI GCWGC 9 cut(s) 15, 263, 406, 541, 1016, 1019, 1022, 1028, 1044
ApoI RAATTY 1 cut(s) 697
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AspLEI GCGC 7 cut(s) 106, 207, 273, 450, 461, 535, 940
AsuC2I CCSGG 3 cut(s) 121, 817, 920
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 3 cut(s) 154, 480, 848
BaeGI GKGCMC 2 cut(s) 184, 221
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 2 cut(s) 184, 377
BbrPI CACGTG 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 884
Bbv12I GWGCWC 2 cut(s) 32, 377
BbvI GCAGC 9 cut(s) 27, 250, 393, 553, 1003, 1009, 1015, 1031, 1031
BccI CCATC 4 cut(s) 72, 502, 943, 1072
BceAI ACGGC 3 cut(s) 184, 347, 542
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 2 cut(s) 883, 987
BcnI CCSGG 3 cut(s) 121, 817, 920
BfaI CTAG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 1017
BfoI RGCGCY 1 cut(s) 274
BglI GCCNNNNNGGC 1 cut(s) 248
Bme1390I CCNGG 5 cut(s) 121, 817, 883, 920, 987
Bme18I GGWCC 3 cut(s) 154, 480, 848
BmiI GGNNCC 7 cut(s) 87, 156, 181, 182, 220, 476, 785
BmrFI CCNGG 5 cut(s) 121, 817, 883, 920, 987
BmsI GCATC 2 cut(s) 677, 1003
BoxI GACNNNNGTC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 884
BpuMI CCSGG 3 cut(s) 121, 817, 920
Bsa29I ATCGAT 1 cut(s) 1119
BsaAI YACGTR 3 cut(s) 80, 420, 766
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 4 cut(s) 277, 816, 986, 1112
BsaWI WCCGGW 2 cut(s) 845, 850
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 178, 780, 926
Bse118I RCCGGY 3 cut(s) 477, 786, 940
Bse1I ACTGG 3 cut(s) 438, 749, 1007
BseBI CCWGG 2 cut(s) 883, 987
BseCI ATCGAT 1 cut(s) 1119
BseDI CCNNGG 4 cut(s) 277, 816, 986, 1112
BseGI GGATG 5 cut(s) 10, 513, 712, 891, 1018
BseLI CCNNNNNNNGG 4 cut(s) 120, 178, 780, 926
BseMII CTCAG 1 cut(s) 362
BseNI ACTGG 3 cut(s) 438, 749, 1007
BseRI GAGGAG 1 cut(s) 301
BseSI GKGCMC 2 cut(s) 184, 221
BseX3I CGGCCG 2 cut(s) 169, 280
BseXI GCAGC 9 cut(s) 27, 250, 393, 553, 1003, 1009, 1015, 1031, 1031
BseYI CCCAGC 5 cut(s) 174, 214, 493, 566, 1001
BsgI GTGCAG 1 cut(s) 249
Bsh1236I CGCG 5 cut(s) 207, 279, 285, 522, 535
Bsh1285I CGRYCG 3 cut(s) 172, 283, 1123
BshNI GGYRCC 1 cut(s) 218
BshVI ATCGAT 1 cut(s) 1119
BsiEI CGRYCG 3 cut(s) 172, 283, 1123
BsiHKAI GWGCWC 2 cut(s) 32, 377
BsiSI CCGG 8 cut(s) 121, 478, 787, 816, 846, 851, 920, 941
BslFI GGGAC 3 cut(s) 103, 140, 833
BslI CCNNNNNNNGG 4 cut(s) 120, 178, 780, 926
BsmFI GGGAC 3 cut(s) 103, 140, 833
Bsp120I GGGCCC 1 cut(s) 180
Bsp1286I GDGCHC 4 cut(s) 32, 184, 221, 377
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 2 cut(s) 1116, 1120
BspCNI CTCAG 1 cut(s) 363
BspDI ATCGAT 1 cut(s) 1119
BspFNI CGCG 5 cut(s) 207, 279, 285, 522, 535
BspLI GGNNCC 7 cut(s) 87, 156, 181, 182, 220, 476, 785
BspMAI CTGCAG 1 cut(s) 1021
BspPI GGATC 1 cut(s) 1124
BspT107I GGYRCC 1 cut(s) 218
BsrFI RCCGGY 3 cut(s) 477, 786, 940
BsrGI TGTACA 1 cut(s) 864
BsrI ACTGG 3 cut(s) 438, 749, 1007
BssAI RCCGGY 3 cut(s) 477, 786, 940
BssECI CCNNGG 4 cut(s) 277, 816, 986, 1112
BssMI GATC 2 cut(s) 1116, 1120
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 1112
Bst2UI CCWGG 2 cut(s) 883, 987
Bst4CI ACNGT 5 cut(s) 518, 655, 661, 864, 905
Bst6I CTCTTC 2 cut(s) 18, 225
BstACI GRCGYC 1 cut(s) 354
BstAPI GCANNNNNTGC 1 cut(s) 456
BstAUI TGTACA 1 cut(s) 864
BstBAI YACGTR 3 cut(s) 80, 420, 766
BstC8I GCNNGC 2 cut(s) 446, 679
BstDEI CTNAG 1 cut(s) 371
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 5 cut(s) 10, 513, 712, 891, 1018
BstFNI CGCG 5 cut(s) 207, 279, 285, 522, 535
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 7 cut(s) 106, 207, 273, 450, 461, 535, 940
BstKTI GATC 2 cut(s) 1119, 1123
BstMBI GATC 2 cut(s) 1116, 1120
BstMCI CGRYCG 3 cut(s) 172, 283, 1123
BstNI CCWGG 2 cut(s) 883, 987
BstNSI RCATGY 1 cut(s) 406
BstPAI GACNNNNGTC 1 cut(s) 516
BstSCI CCNGG 5 cut(s) 119, 815, 881, 918, 985
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 2 cut(s) 184, 221
BstUI CGCG 5 cut(s) 207, 279, 285, 522, 535
BstV1I GCAGC 9 cut(s) 27, 250, 393, 553, 1003, 1009, 1015, 1031, 1031
BstV2I GAAGAC 1 cut(s) 884
BstZI CGGCCG 2 cut(s) 169, 280
Bsu15I ATCGAT 1 cut(s) 1119
BsuTUI ATCGAT 1 cut(s) 1119
BtgI CCRYGG 1 cut(s) 277
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 5 cut(s) 10, 513, 712, 891, 1018
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 2 cut(s) 645, 1014
Cac8I GCNNGC 2 cut(s) 446, 679
CciNI GCGGCCGC 1 cut(s) 280
CfoI GCGC 7 cut(s) 106, 207, 273, 450, 461, 535, 940
Cfr10I RCCGGY 3 cut(s) 477, 786, 940
Cfr42I CCGCGG 1 cut(s) 280
ClaI ATCGAT 1 cut(s) 1119
CpoI CGGWCCG 1 cut(s) 848
CseI GACGC 3 cut(s) 196, 296, 511
Csp6I GTAC 3 cut(s) 142, 421, 865
CspI CGGWCCG 1 cut(s) 848
CviAII CATG 1 cut(s) 403
CviQI GTAC 3 cut(s) 142, 421, 865
DdeI CTNAG 1 cut(s) 371
DpnI GATC 2 cut(s) 1118, 1122
DpnII GATC 2 cut(s) 1116, 1120
EaeI YGGCCR 2 cut(s) 169, 280
EagI CGGCCG 2 cut(s) 169, 280
Eam1104I CTCTTC 2 cut(s) 18, 225
EarI CTCTTC 2 cut(s) 18, 225
EciI GGCGGA 1 cut(s) 304
Ecl136II GAGCTC 1 cut(s) 375
EclXI CGGCCG 2 cut(s) 169, 280
Eco130I CCWWGG 1 cut(s) 1112
Eco24I GRGCYC 2 cut(s) 184, 377
Eco47I GGWCC 3 cut(s) 154, 480, 848
Eco47III AGCGCT 1 cut(s) 272
Eco52I CGGCCG 2 cut(s) 169, 280
Eco53kI GAGCTC 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 830
Eco72I CACGTG 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 375
EcoO109I RGGNCCY 2 cut(s) 180, 249
EcoRII CCWGG 2 cut(s) 881, 985
EcoT14I CCWWGG 1 cut(s) 1112
EcoT38I GRGCYC 2 cut(s) 184, 377
ErhI CCWWGG 1 cut(s) 1112
FaeI CATG 1 cut(s) 406
FaiI YATR 5 cut(s) 47, 69, 404, 612, 974
FalI AAGNNNNNCTT 4 cut(s) 655, 687, 675, 707
FaqI GGGAC 3 cut(s) 103, 140, 833
FatI CATG 1 cut(s) 402
FauI CCCGC 1 cut(s) 465
FblI GTMKAC 1 cut(s) 399
FokI GGATG 5 cut(s) 17, 520, 719, 898, 1025
FriOI GRGCYC 2 cut(s) 184, 377
FspBI CTAG 1 cut(s) 246
GlaI GCGC 7 cut(s) 105, 206, 272, 449, 460, 534, 939
GsaI CCCAGC 5 cut(s) 178, 218, 497, 570, 1005
HaeII RGCGCY 1 cut(s) 274
HapII CCGG 8 cut(s) 121, 478, 787, 816, 846, 851, 920, 941
HgaI GACGC 3 cut(s) 196, 296, 511
HhaI GCGC 7 cut(s) 106, 207, 273, 450, 461, 535, 940
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 7 cut(s) 104, 205, 271, 448, 459, 533, 938
HinP1I GCGC 7 cut(s) 104, 205, 271, 448, 459, 533, 938
HincII GTYRAC 4 cut(s) 400, 771, 843, 970
HindII GTYRAC 4 cut(s) 400, 771, 843, 970
HinfI GANTC 3 cut(s) 41, 116, 805
HpaII CCGG 8 cut(s) 121, 478, 787, 816, 846, 851, 920, 941
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 4 cut(s) 400, 771, 843, 970
Hpy188I TCNGA 7 cut(s) 334, 372, 391, 810, 837, 948, 1125
Hpy188III TCNNGA 5 cut(s) 505, 526, 550, 577, 601
Hpy8I GTNNAC 4 cut(s) 400, 771, 843, 970
Hpy99I CGWCG 7 cut(s) 260, 290, 341, 353, 356, 359, 401
HpyAV CCTTC 4 cut(s) 141, 232, 790, 805
HpyCH4III ACNGT 5 cut(s) 518, 655, 661, 864, 905
HpyCH4IV ACGT 5 cut(s) 79, 258, 354, 419, 765
HpyCH4V TGCA 7 cut(s) 266, 634, 650, 668, 681, 1019, 1047
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 5 cut(s) 79, 258, 354, 419, 765
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 7 cut(s) 104, 205, 271, 448, 459, 533, 938
KspI CCGCGG 1 cut(s) 280
Kzo9I GATC 2 cut(s) 1116, 1120
LmnI GCTCC 5 cut(s) 85, 132, 380, 783, 1125
Lsp1109I GCAGC 9 cut(s) 27, 250, 393, 553, 1003, 1009, 1015, 1031, 1031
LweI GCATC 2 cut(s) 677, 1003
MaeI CTAG 1 cut(s) 246
MaeII ACGT 5 cut(s) 79, 258, 354, 419, 765
MaeIII GTNAC 4 cut(s) 73, 292, 559, 655
MalI GATC 2 cut(s) 1118, 1122
MboI GATC 2 cut(s) 1116, 1120
MboII GAAGA 6 cut(s) 35, 242, 353, 663, 814, 889
MhlI GDGCHC 4 cut(s) 32, 184, 221, 377
MluCI AATT 3 cut(s) 697, 1091, 1147
MlyI GAGTC 2 cut(s) 35, 125
MmeI TCCRAC 1 cut(s) 507
MseI TTAA 2 cut(s) 302, 1146
MspA1I CMGCKG 5 cut(s) 174, 279, 493, 1022, 1028
MspI CCGG 8 cut(s) 121, 478, 787, 816, 846, 851, 920, 941
MspR9I CCNGG 5 cut(s) 121, 817, 883, 920, 987
MvaI CCWGG 2 cut(s) 883, 987
MvnI CGCG 5 cut(s) 207, 279, 285, 522, 535
NciI CCSGG 3 cut(s) 121, 817, 920
NdeII GATC 2 cut(s) 1116, 1120
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 7 cut(s) 87, 156, 181, 182, 220, 476, 785
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 2 cut(s) 292, 559
NotI GCGGCCGC 1 cut(s) 280
NspI RCATGY 1 cut(s) 406
PcsI WCGNNNNNNNCGW 5 cut(s) 234, 345, 354, 360, 555
PfeI GAWTC 1 cut(s) 805
PflFI GACNNNGTC 2 cut(s) 290, 353
PflMI CCANNNNNTGG 1 cut(s) 780
PfoI TCCNGGA 1 cut(s) 119
Ple19I CGATCG 1 cut(s) 1123
PleI GAGTC 2 cut(s) 35, 124
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
PpsI GAGTC 2 cut(s) 35, 124
Ppu21I YACGTR 3 cut(s) 80, 420, 766
PshAI GACNNNNGTC 1 cut(s) 516
Psp124BI GAGCTC 1 cut(s) 377
Psp6I CCWGG 2 cut(s) 881, 985
PspCI CACGTG 1 cut(s) 80
PspFI CCCAGC 5 cut(s) 174, 214, 493, 566, 1001
PspGI CCWGG 2 cut(s) 881, 985
PspN4I GGNNCC 7 cut(s) 87, 156, 181, 182, 220, 476, 785
PspOMI GGGCCC 1 cut(s) 180
PstI CTGCAG 1 cut(s) 1021
PsyI GACNNNGTC 2 cut(s) 290, 353
PvuI CGATCG 1 cut(s) 1123
PvuII CAGCTG 1 cut(s) 1022
RsaI GTAC 3 cut(s) 143, 422, 866
RsaNI GTAC 3 cut(s) 142, 421, 865
Rsr2I CGGWCCG 1 cut(s) 848
RsrII CGGWCCG 1 cut(s) 848
SacI GAGCTC 1 cut(s) 377
SacII CCGCGG 1 cut(s) 280
SalI GTCGAC 1 cut(s) 398
SaqAI TTAA 2 cut(s) 302, 1146
Sau3AI GATC 2 cut(s) 1116, 1120
SchI GAGTC 2 cut(s) 35, 125
ScrFI CCNGG 5 cut(s) 121, 817, 883, 920, 987
SduI GDGCHC 4 cut(s) 32, 184, 221, 377
SfaNI GCATC 2 cut(s) 677, 1003
SfcI CTRYAG 1 cut(s) 1017
SfiI GGCCNNNNNGGCC 1 cut(s) 248
Sfr303I CCGCGG 1 cut(s) 280
SgrBI CCGCGG 1 cut(s) 280
SinI GGWCC 3 cut(s) 154, 480, 848
Sse9I AATT 3 cut(s) 697, 1091, 1147
SspMI CTAG 1 cut(s) 246
SstI GAGCTC 1 cut(s) 377
StyD4I CCNGG 5 cut(s) 119, 815, 881, 918, 985
StyI CCWWGG 1 cut(s) 1112
TaaI ACNGT 5 cut(s) 518, 655, 661, 864, 905
TaiI ACGT 5 cut(s) 82, 261, 357, 422, 768
TaqI TCGA 6 cut(s) 357, 399, 549, 733, 914, 1119
TasI AATT 3 cut(s) 697, 1091, 1147
TatI WGTACW 2 cut(s) 141, 864
TauI GCSGC 8 cut(s) 174, 245, 282, 285, 493, 1028, 1041, 1044
TfiI GAWTC 1 cut(s) 805
Tru1I TTAA 2 cut(s) 302, 1146
Tru9I TTAA 2 cut(s) 302, 1146
TscAI CASTG 2 cut(s) 652, 1014
TseFI GTSAC 2 cut(s) 292, 559
TseI GCWGC 9 cut(s) 15, 263, 406, 541, 1016, 1019, 1022, 1028, 1044
Tsp45I GTSAC 2 cut(s) 292, 559
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 2 cut(s) 652, 1014
Tth111I GACNNNGTC 2 cut(s) 290, 353
Van91I CCANNNNNTGG 1 cut(s) 780
VpaK11BI GGWCC 3 cut(s) 154, 480, 848
XapI RAATTY 1 cut(s) 697
XceI RCATGY 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XmiI GTMKAC 1 cut(s) 399
XspI CTAG 1 cut(s) 246
ZraI GACGTC 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.