Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Reverse (-)

51300026 .. 51302061

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG352500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGAAAACCAAGGACCATGGCCACTTGGCCAGCACCTCCTATATATACTCAGTCTTCAAATCCCATTCCATCATAACAGAACACAGAACACAGAACACAGAACACAAAACACAAAACACATACACACATTCTCTCTCTCTCTCTCTATTGCCCACATCAATAGTCAAAACCACCTTCTCTTATCCTCCTCCTGCTCTTCTTCTTCTTCTTCAGATATTCAAATTACAACTCAGAAACATGGATATAACAAGCAGCACAACAGATGAAAGCACAAGCAGTGAGCTCTCAATGTCAATTTCACCGCCTCCGAGACCAAACAACAAGCTCTCTTCTTCGCCGCCGCAGACCCTCTGCCGCGTCGGCAGCGGCGCCAGCAGCGTCATTCTCGACTCCGAGAACGGAATCGAAGCCGAGTCCCGCAAGCTCCCGTCCTCTAAGTACAAAGGCGTGGTCCCCCAGCCCAACGGCCGCTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTGGGCACCTTCAACGAGGAGGACGAGGCCGCCCGGGCCTATGACGTCGCGGCCCAGCGCTTTCGCGGCCGCGACGCCGTAACTAACTTCAAACCCCTAGCAGAGTCCACCGACAACGACGACGATGAAATCGAGGCAGCTTTCCTCAACTCCCACTCCAAGTCCGAAATCGTCGACATGCTGAGGAAGCACACTTACAATGACGAGCTGGAGCAGAGCAAGCGCAACTTGGGATTCGACGCCAACGGCAAGCGGCGGGCACGGGGCGAGAGCGGCCCAATGGGCCCGGACCGGGCCCCTAAGGCGCGTGAACAGCTTTTCGAGAAAGCTGTCACGCCCAGCGACGTGGGGAAGCTGAACCGGCTGGTCATCCCCAAGCAACACGCCGAGAAGCACTTTCCGCTGCAGAACGGAAGCACGTGCAAGGGCGTGTTGCTAAACTTCGAGGACGTCGGCGGCAAAGTGTGGCGGTTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGTTGACCAAAGGCTGGAGCCGCTTCGTGAAGGAGAAGAATCTCAAGGCCGGCGACATTGTGAGTTTCCAGAGGTCGACCGGGCCGGACAAGCAGCTTTATATAGATTGGAAGACAAGGAGCACCGGACCGAACCCGGTTCAGTCCGGGCCGGTTCAGATGGTCCGGCTATTCGGGGTCAACATTTTCAAAATACCTGGGAGCGGCTCCCCTGGTGTGGACGCTCCTATTGGCTGCAATGCTTTGGGGAAGAGAATGAGGGATATTGAATTGTTGGAATTAGAATTTAGCAAGAAACCAAGGATAATTGGAGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

445

Amino Acids

49.7

Weight (kDa)

9.44

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	145 - 193	2.1e-09	AP2 domain
B3	PF02362	277 - 376	1.4e-26	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	558, 963
AccB1I	GGYRCC	2 cut(s)	368, 515
AccB7I	CCANNNNNTGG	1 cut(s)	1032
AccBSI	CCGCTC	2 cut(s)	783, 1221
AccI	GTMKAC	2 cut(s)	684, 1094
AccII	CGCG	6 cut(s)	357, 504, 560, 576, 582, 817
AcoI	YGGCCR	4 cut(s)	19, 27, 466, 577
AcsI	RAATTY	1 cut(s)	1301
AcuI	CTGAAG	1 cut(s)	194
AcvI	CACGTG	1 cut(s)	930
AcyI	GRCGYC	5 cut(s)	369, 555, 585, 750, 960
AfaI	GTAC	2 cut(s)	440, 989
AfeI	AGCGCT	1 cut(s)	569
AfiI	CCNNNNNNNGG	4 cut(s)	802, 1032, 1220, 1234
AflIII	ACRYGT	1 cut(s)	1017
AgsI	TTSAA	6 cut(s)	58, 220, 523, 601, 1207, 1286
AjiI	CACGTC	1 cut(s)	856
AjnI	CCWGG	2 cut(s)	1213, 1228
Alw21I	GWGCWC	2 cut(s)	285, 1142
Alw26I	GTCTC	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	543
Aor51HI	AGCGCT	1 cut(s)	569
ApaI	GGGCCC	2 cut(s)	797, 808
ApeKI	GCWGC	8 cut(s)	252, 363, 375, 647, 913, 1005, 1111, 1251
ApoI	RAATTY	1 cut(s)	1301
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
AspLEI	GCGC	6 cut(s)	371, 479, 504, 570, 735, 817
AsuC2I	CCSGG	7 cut(s)	544, 545, 797, 803, 1099, 1154, 1165
AsuHPI	GGTGA	1 cut(s)	291
AvaI	CYCGRG	1 cut(s)	543
AvaII	GGWCC	5 cut(s)	13, 451, 799, 1145, 1180
AxyI	CCTNAGG	1 cut(s)	810
BaeGI	GKGCMC	4 cut(s)	518, 772, 797, 808
BalI	TGGCCA	2 cut(s)	21, 29
BanI	GGYRCC	2 cut(s)	368, 515
BanII	GRGCYC	3 cut(s)	285, 797, 808
BarI	GAAGNNNNNNTAC	2 cut(s)	689, 721
BbrPI	CACGTG	1 cut(s)	930
BbsI	GAAGAC	2 cut(s)	46, 1136
Bbv12I	GWGCWC	2 cut(s)	285, 1142
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	8 cut(s)	264, 375, 387, 659, 900, 1017, 1123, 1238
BccI	CCATC	2 cut(s)	77, 1171
BceAI	ACGGC	3 cut(s)	481, 572, 772
BciT130I	CCWGG	2 cut(s)	1215, 1230
BcnI	CCSGG	7 cut(s)	544, 545, 797, 803, 1099, 1154, 1165
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	914
BfoI	RGCGCY	3 cut(s)	372, 480, 571
BglI	GCCNNNNNGGC	5 cut(s)	360, 474, 545, 792, 812
Bme1390I	CCNGG	9 cut(s)	544, 545, 797, 803, 1099, 1154, 1165, 1215, 1230
Bme18I	GGWCC	5 cut(s)	13, 451, 799, 1145, 1180
BmeT110I	CYCGRG	1 cut(s)	543
BmgBI	CACGTC	1 cut(s)	856
BmiI	GGNNCC	9 cut(s)	370, 453, 517, 795, 806, 807, 983, 1037, 1225
BmrFI	CCNGG	9 cut(s)	544, 545, 797, 803, 1099, 1154, 1165, 1215, 1230
BpiI	GAAGAC	2 cut(s)	46, 1136
BpmI	CTGGAG	2 cut(s)	740, 1054
Bpu10I	CCTNAGC	1 cut(s)	692
BpuEI	CTTGAG	1 cut(s)	1046
BpuMI	CCSGG	7 cut(s)	544, 545, 797, 803, 1099, 1154, 1165
BsaAI	YACGTR	2 cut(s)	930, 1018
BsaHI	GRCGYC	5 cut(s)	369, 555, 585, 750, 960
BsaI	GGTCTC	1 cut(s)	304
BsaJI	CCNNGG	6 cut(s)	9, 16, 543, 1214, 1228, 1316
BsaWI	WCCGGW	2 cut(s)	984, 1142
BsaXI	ACNNNNNCTCC	2 cut(s)	650, 680
Bsc4I	CCNNNNNNNGG	4 cut(s)	802, 1032, 1220, 1234
Bse118I	RCCGGY	3 cut(s)	870, 1067, 1168
Bse1I	ACTGG	1 cut(s)	1001
Bse21I	CCTNAGG	1 cut(s)	810
Bse3DI	GCAATG	1 cut(s)	1261
BseBI	CCWGG	2 cut(s)	1215, 1230
BseDI	CCNNGG	6 cut(s)	9, 16, 543, 1214, 1228, 1316
BseGI	GGATG	1 cut(s)	879
BseLI	CCNNNNNNNGG	4 cut(s)	802, 1032, 1220, 1234
BseMI	GCAATG	1 cut(s)	1261
BseMII	CTCAG	4 cut(s)	63, 244, 494, 683
BseNI	ACTGG	1 cut(s)	1001
BseRI	GAGGAG	2 cut(s)	177, 542
BseSI	GKGCMC	4 cut(s)	518, 772, 797, 808
BseX3I	CGGCCG	2 cut(s)	466, 577
BseXI	GCAGC	8 cut(s)	264, 375, 387, 659, 900, 1017, 1123, 1238
BseYI	CCCAGC	5 cut(s)	456, 471, 511, 564, 848
Bsh1236I	CGCG	6 cut(s)	357, 504, 560, 576, 582, 817
Bsh1285I	CGRYCG	3 cut(s)	469, 580, 1098
BshNI	GGYRCC	2 cut(s)	368, 515
BsiEI	CGRYCG	3 cut(s)	469, 580, 1098
BsiHKAI	GWGCWC	2 cut(s)	285, 1142
BsiHKCI	CYCGRG	1 cut(s)	543
BslFI	GGGAC	2 cut(s)	400, 437
BslI	CCNNNNNNNGG	4 cut(s)	802, 1032, 1220, 1234
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	2 cut(s)	400, 437
Bso31I	GGTCTC	1 cut(s)	304
BsoBI	CYCGRG	1 cut(s)	543
Bsp120I	GGGCCC	2 cut(s)	793, 804
Bsp1286I	GDGCHC	6 cut(s)	285, 518, 772, 797, 808, 1142
Bsp19I	CCATGG	1 cut(s)	16
BspCNI	CTCAG	4 cut(s)	62, 243, 493, 684
BspFNI	CGCG	6 cut(s)	357, 504, 560, 576, 582, 817
BspLI	GGNNCC	9 cut(s)	370, 453, 517, 795, 806, 807, 983, 1037, 1225
BspMAI	CTGCAG	1 cut(s)	918
BspQI	GCTCTTC	1 cut(s)	201
BspT107I	GGYRCC	2 cut(s)	368, 515
BspTNI	GGTCTC	1 cut(s)	304
BsrBI	CCGCTC	2 cut(s)	783, 1221
BsrDI	GCAATG	1 cut(s)	1261
BsrFI	RCCGGY	3 cut(s)	870, 1067, 1168
BsrI	ACTGG	1 cut(s)	1001
BssAI	RCCGGY	3 cut(s)	870, 1067, 1168
BssECI	CCNNGG	6 cut(s)	9, 16, 543, 1214, 1228, 1316
BssNI	GRCGYC	5 cut(s)	369, 555, 585, 750, 960
BssT1I	CCWWGG	3 cut(s)	9, 16, 1316
Bst2UI	CCWGG	2 cut(s)	1215, 1230
Bst6I	CTCTTC	3 cut(s)	201, 334, 1262
BstACI	GRCGYC	5 cut(s)	369, 555, 585, 750, 960
BstBAI	YACGTR	2 cut(s)	930, 1018
BstC8I	GCNNGC	7 cut(s)	31, 373, 422, 731, 761, 768, 1069
BstDEI	CTNAG	6 cut(s)	49, 230, 435, 480, 692, 810
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	879
BstFNI	CGCG	6 cut(s)	357, 504, 560, 576, 582, 817
BstH2I	RGCGCY	3 cut(s)	372, 480, 571
BstHHI	GCGC	6 cut(s)	371, 479, 504, 570, 735, 817
BstMAI	GTCTC	1 cut(s)	304
BstMCI	CGRYCG	3 cut(s)	469, 580, 1098
BstNI	CCWGG	2 cut(s)	1215, 1230
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	9 cut(s)	542, 543, 795, 801, 1097, 1152, 1163, 1213, 1228
BstSFI	CTRYAG	1 cut(s)	914
BstSLI	GKGCMC	4 cut(s)	518, 772, 797, 808
BstUI	CGCG	6 cut(s)	357, 504, 560, 576, 582, 817
BstV1I	GCAGC	8 cut(s)	264, 375, 387, 659, 900, 1017, 1123, 1238
BstV2I	GAAGAC	2 cut(s)	46, 1136
BstXI	CCANNNNNNTGG	1 cut(s)	856
BstZI	CGGCCG	2 cut(s)	466, 577
Bsu36I	CCTNAGG	1 cut(s)	810
BtgI	CCRYGG	1 cut(s)	16
BtrI	CACGTC	1 cut(s)	856
BtsCI	GGATG	1 cut(s)	879
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	7 cut(s)	31, 373, 422, 731, 761, 768, 1069
CciNI	GCGGCCGC	1 cut(s)	577
CfoI	GCGC	6 cut(s)	371, 479, 504, 570, 735, 817
Cfr10I	RCCGGY	3 cut(s)	870, 1067, 1168
Cfr9I	CCCGGG	1 cut(s)	543
CpoI	CGGWCCG	2 cut(s)	799, 1145
CseI	GACGC	6 cut(s)	346, 367, 493, 593, 758, 1247
Csp6I	GTAC	2 cut(s)	439, 988
CspI	CGGWCCG	2 cut(s)	799, 1145
CviAII	CATG	3 cut(s)	17, 238, 688
CviQI	GTAC	2 cut(s)	439, 988
DdeI	CTNAG	6 cut(s)	49, 230, 435, 480, 692, 810
DinI	GGCGCC	1 cut(s)	370
EaeI	YGGCCR	4 cut(s)	19, 27, 466, 577
EagI	CGGCCG	2 cut(s)	466, 577
Eam1104I	CTCTTC	3 cut(s)	201, 334, 1262
EarI	CTCTTC	3 cut(s)	201, 334, 1262
Ecl136II	GAGCTC	1 cut(s)	283
EclXI	CGGCCG	2 cut(s)	466, 577
Eco130I	CCWWGG	3 cut(s)	9, 16, 1316
Eco24I	GRGCYC	3 cut(s)	285, 797, 808
Eco31I	GGTCTC	1 cut(s)	304
Eco47I	GGWCC	5 cut(s)	13, 451, 799, 1145, 1180
Eco47III	AGCGCT	1 cut(s)	569
Eco52I	CGGCCG	2 cut(s)	466, 577
Eco53kI	GAGCTC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	194
Eco72I	CACGTG	1 cut(s)	930
Eco81I	CCTNAGG	1 cut(s)	810
Eco88I	CYCGRG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	805
EcoRII	CCWGG	2 cut(s)	1213, 1228
EcoT14I	CCWWGG	3 cut(s)	9, 16, 1316
EcoT38I	GRGCYC	3 cut(s)	285, 797, 808
EgeI	GGCGCC	1 cut(s)	370
EheI	GGCGCC	1 cut(s)	370
ErhI	CCWWGG	3 cut(s)	9, 16, 1316
FaeI	CATG	3 cut(s)	20, 241, 691
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	2 cut(s)	400, 437
FatI	CATG	3 cut(s)	16, 237, 687
FauI	CCCGC	2 cut(s)	425, 759
FblI	GTMKAC	2 cut(s)	684, 1094
FokI	GGATG	1 cut(s)	866
FriOI	GRGCYC	3 cut(s)	285, 797, 808
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	6 cut(s)	370, 478, 503, 569, 734, 816
GsaI	CCCAGC	5 cut(s)	460, 475, 515, 568, 852
GsuI	CTGGAG	2 cut(s)	740, 1054
HaeII	RGCGCY	3 cut(s)	372, 480, 571
HgaI	GACGC	6 cut(s)	346, 367, 493, 593, 758, 1247
HhaI	GCGC	6 cut(s)	371, 479, 504, 570, 735, 817
Hin1I	GRCGYC	5 cut(s)	369, 555, 585, 750, 960
Hin1II	CATG	3 cut(s)	20, 241, 691
Hin6I	GCGC	6 cut(s)	369, 477, 502, 568, 733, 815
HinP1I	GCGC	6 cut(s)	369, 477, 502, 568, 733, 815
HincII	GTYRAC	4 cut(s)	685, 1023, 1095, 1198
HindII	GTYRAC	4 cut(s)	685, 1023, 1095, 1198
HinfI	GANTC	6 cut(s)	389, 402, 413, 614, 744, 1057
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	7 cut(s)	618, 685, 821, 1023, 1095, 1198, 1237
Hpy188I	TCNGA	7 cut(s)	213, 233, 309, 394, 483, 676, 1176
Hpy188III	TCNNGA	4 cut(s)	386, 832, 1045, 1087
Hpy8I	GTNNAC	7 cut(s)	618, 685, 821, 1023, 1095, 1198, 1237
Hpy99I	CGWCG	9 cut(s)	362, 560, 587, 632, 635, 686, 752, 857, 965
HpyAV	CCTTC	3 cut(s)	184, 529, 1042
HpyCH4IV	ACGT	5 cut(s)	555, 855, 929, 960, 1017
HpyCH4V	TGCA	3 cut(s)	916, 933, 1254
HpyF3I	CTNAG	6 cut(s)	49, 230, 435, 480, 692, 810
HpySE526I	ACGT	5 cut(s)	555, 855, 929, 960, 1017
Hsp92I	GRCGYC	5 cut(s)	369, 555, 585, 750, 960
Hsp92II	CATG	3 cut(s)	20, 241, 691
HspAI	GCGC	6 cut(s)	369, 477, 502, 568, 733, 815
KasI	GGCGCC	1 cut(s)	368
KroI	GCCGGC	1 cut(s)	1067
KroNI	GCCGGC	1 cut(s)	1069
LguI	GCTCTTC	1 cut(s)	201
LmnI	GCTCC	8 cut(s)	429, 721, 1035, 1137, 1218, 1229, 1246, 1328
Lsp1109I	GCAGC	8 cut(s)	264, 375, 387, 659, 900, 1017, 1123, 1238
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	5 cut(s)	555, 855, 929, 960, 1017
MaeIII	GTNAC	2 cut(s)	589, 841
MbiI	CCGCTC	2 cut(s)	783, 1221
MhlI	GDGCHC	6 cut(s)	285, 518, 772, 797, 808, 1142
MlsI	TGGCCA	2 cut(s)	21, 29
MluCI	AATT	6 cut(s)	221, 294, 1286, 1295, 1301, 1323
MluNI	TGGCCA	2 cut(s)	21, 29
Mly113I	GGCGCC	1 cut(s)	369
MlyI	GAGTC	3 cut(s)	383, 422, 623
MmeI	TCCRAC	1 cut(s)	1272
Mox20I	TGGCCA	2 cut(s)	21, 29
MroNI	GCCGGC	1 cut(s)	1067
MscI	TGGCCA	2 cut(s)	21, 29
Msp20I	TGGCCA	2 cut(s)	21, 29
MspA1I	CMGCKG	3 cut(s)	366, 471, 913
MspR9I	CCNGG	9 cut(s)	544, 545, 797, 803, 1099, 1154, 1165, 1215, 1230
MvaI	CCWGG	2 cut(s)	1215, 1230
MvnI	CGCG	6 cut(s)	357, 504, 560, 576, 582, 817
NaeI	GCCGGC	1 cut(s)	1069
NarI	GGCGCC	1 cut(s)	369
NciI	CCSGG	7 cut(s)	544, 545, 797, 803, 1099, 1154, 1165
NcoI	CCATGG	1 cut(s)	16
NgoMIV	GCCGGC	1 cut(s)	1067
NlaIII	CATG	3 cut(s)	20, 241, 691
NlaIV	GGNNCC	9 cut(s)	370, 453, 517, 795, 806, 807, 983, 1037, 1225
NmeAIII	GCCGAG	2 cut(s)	436, 922
NmuCI	GTSAC	1 cut(s)	841
NotI	GCGGCCGC	1 cut(s)	577
NspI	RCATGY	1 cut(s)	691
PciSI	GCTCTTC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	2 cut(s)	531, 639
PdiI	GCCGGC	1 cut(s)	1069
PfeI	GAWTC	3 cut(s)	402, 744, 1057
PflMI	CCANNNNNTGG	1 cut(s)	1032
PleI	GAGTC	3 cut(s)	383, 421, 622
PluTI	GGCGCC	1 cut(s)	372
PmaCI	CACGTG	1 cut(s)	930
PmlI	CACGTG	1 cut(s)	930
PpsI	GAGTC	3 cut(s)	383, 421, 622
Ppu21I	YACGTR	2 cut(s)	930, 1018
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	2 cut(s)	1213, 1228
PspCI	CACGTG	1 cut(s)	930
PspFI	CCCAGC	5 cut(s)	456, 471, 511, 564, 848
PspGI	CCWGG	2 cut(s)	1213, 1228
PspN4I	GGNNCC	9 cut(s)	370, 453, 517, 795, 806, 807, 983, 1037, 1225
PspOMI	GGGCCC	2 cut(s)	793, 804
PstI	CTGCAG	1 cut(s)	918
RsaI	GTAC	2 cut(s)	440, 989
RsaNI	GTAC	2 cut(s)	439, 988
Rsr2I	CGGWCCG	2 cut(s)	799, 1145
RsrII	CGGWCCG	2 cut(s)	799, 1145
SacI	GAGCTC	1 cut(s)	285
SalI	GTCGAC	2 cut(s)	683, 1093
SapI	GCTCTTC	1 cut(s)	201
SchI	GAGTC	3 cut(s)	383, 422, 623
ScrFI	CCNGG	9 cut(s)	544, 545, 797, 803, 1099, 1154, 1165, 1215, 1230
SduI	GDGCHC	6 cut(s)	285, 518, 772, 797, 808, 1142
SfcI	CTRYAG	1 cut(s)	914
SfiI	GGCCNNNNNGGCC	2 cut(s)	545, 792
SfoI	GGCGCC	1 cut(s)	370
SinI	GGWCC	5 cut(s)	13, 451, 799, 1145, 1180
SmaI	CCCGGG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
SrfI	GCCCGGGC	1 cut(s)	545
Sse9I	AATT	6 cut(s)	221, 294, 1286, 1295, 1301, 1323
SspDI	GGCGCC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	608
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	9 cut(s)	542, 543, 795, 801, 1097, 1152, 1163, 1213, 1228
StyI	CCWWGG	3 cut(s)	9, 16, 1316
TaiI	ACGT	5 cut(s)	558, 858, 932, 963, 1020
TaqI	TCGA	8 cut(s)	387, 405, 642, 684, 747, 831, 954, 1094
TaqII	GACCGA	1 cut(s)	1162
TasI	AATT	6 cut(s)	221, 294, 1286, 1295, 1301, 1323
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	3 cut(s)	402, 744, 1057
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	841
TseI	GCWGC	8 cut(s)	252, 363, 375, 647, 913, 1005, 1111, 1251
Tsp45I	GTSAC	1 cut(s)	841
TspDTI	ATGAA	3 cut(s)	17, 279, 651
TspGWI	ACGGA	2 cut(s)	414, 936
TspMI	CCCGGG	1 cut(s)	543
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	1032
VpaK11BI	GGWCC	5 cut(s)	13, 451, 799, 1145, 1180
XapI	RAATTY	1 cut(s)	1301
XceI	RCATGY	1 cut(s)	691
XmaI	CCCGGG	1 cut(s)	543
XmiI	GTMKAC	2 cut(s)	684, 1094
XspI	CTAG	1 cut(s)	608
ZraI	GACGTC	2 cut(s)	556, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.