Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Reverse (-)

57523796 .. 57524881

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGATATAACAAGCAGCACAACAGATGAAAGCACAAGCAGTGAGCTCTCAATGTCAATTTCACCGCCTCCGAGACCAAACAACAAGCTCTCCTCTTCGCCGCCGCAGAGCCTCTGCCGCGTCGGCAGCGGCGCCAGCAGCGTCATTCTCGACTCCGAGAACGGAATCGAGGCGGAGTCCCGCAAGCTCCCGTCCTCCAAGTACAAAGGCGTGCTGGAGCAGAGCAAGCGCAACTTCGGATTCGACGCCAACGGCAAGCGGCGGGCACGGGGCGAGAGCGGCCCAATGGGCCCGGACAGGGCCGCTAAGGCGCGTGAACAGCTTTTCGAGAAAGCTGTCACGCCCAGCGACGTGGGGAAGCTGAACCGGCTGGTCATCCCCAAGCAACACGCCGAGAAGCACTTTCCGCTGCAGAGCGGAAGCACGTGCAAGGGCGTGTTGCTAAACTTCGAGGACGTCGGCGGCAAAGTGTGGCGGTTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGTTGACCAAAGGGTGGAGCCGCTTCGTGAAGGAGAAGAATCTCAAGGCCGGCGACATTGTGAGTTTCCAGAGGTCGACCGGGCCGGACAAGCAGCTTTATATAGATTGGAAGACAAGGAGCACCGGACCGAACCCGGTTCAGATGGTCCGGCTATTCGGGGTCAACATTTTCAAAATACCTGGGAGCGGCTCCGCTGGTGCGGACGCTCCTATTGGCTGCAATGCTTTGGGGAAGAGAATGAGGGAGATTGAATTGTTGGAATTAGAATTTAGCAAGAAACCAAGGATAATTGGAGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

272

Amino Acids

29.84

Weight (kDa)

9.83

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	109 - 208	5e-27	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	459
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	528
AccBSI	CCGCTC	3 cut(s)	279, 417, 702
AccI	GTMKAC	1 cut(s)	590
AccII	CGCG	2 cut(s)	120, 313
AcsI	RAATTY	1 cut(s)	782
AcvI	CACGTG	1 cut(s)	426
AcyI	GRCGYC	3 cut(s)	132, 246, 456
AfaI	GTAC	2 cut(s)	203, 485
AfiI	CCNNNNNNNGG	3 cut(s)	298, 528, 701
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	2 cut(s)	688, 767
AjiI	CACGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	9 cut(s)	46, 88, 187, 322, 335, 361, 510, 610, 812
AluI	AGCT	9 cut(s)	46, 88, 187, 322, 335, 361, 510, 610, 812
Alw21I	GWGCWC	2 cut(s)	48, 638
Alw26I	GTCTC	1 cut(s)	67
AoxI	GGCC	5 cut(s)	280, 289, 300, 561, 596
ApaI	GGGCCC	1 cut(s)	293
ApeKI	GCWGC	7 cut(s)	15, 126, 138, 409, 501, 607, 732
ApoI	RAATTY	1 cut(s)	782
AspLEI	GCGC	3 cut(s)	134, 231, 313
AspS9I	GGNCC	7 cut(s)	281, 289, 290, 300, 596, 641, 661
AsuC2I	CCSGG	3 cut(s)	293, 595, 650
AsuHPI	GGTGA	1 cut(s)	54
AvaII	GGWCC	2 cut(s)	641, 661
BaeGI	GKGCMC	2 cut(s)	268, 293
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	2 cut(s)	48, 293
BbrPI	CACGTG	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	2 cut(s)	48, 638
BbvI	GCAGC	7 cut(s)	27, 138, 150, 396, 513, 619, 719
BccI	CCATC	1 cut(s)	652
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	696
BcnI	CCSGG	3 cut(s)	293, 595, 650
BcoDI	GTCTC	1 cut(s)	67
BfmI	CTRYAG	1 cut(s)	410
BfoI	RGCGCY	1 cut(s)	135
BglI	GCCNNNNNGGC	3 cut(s)	123, 288, 308
Bme1390I	CCNGG	4 cut(s)	293, 595, 650, 696
Bme18I	GGWCC	2 cut(s)	641, 661
BmgBI	CACGTC	1 cut(s)	352
BmgT120I	GGNCC	7 cut(s)	281, 289, 290, 300, 596, 641, 661
BmiI	GGNNCC	5 cut(s)	133, 291, 479, 533, 706
BmrFI	CCNGG	4 cut(s)	293, 595, 650, 696
BpiI	GAAGAC	1 cut(s)	632
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	3 cut(s)	293, 595, 650
BsaAI	YACGTR	2 cut(s)	426, 514
BsaHI	GRCGYC	3 cut(s)	132, 246, 456
BsaI	GGTCTC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	695, 797
BsaWI	WCCGGW	2 cut(s)	480, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 528, 701
Bse118I	RCCGGY	2 cut(s)	366, 563
Bse1I	ACTGG	1 cut(s)	497
Bse3DI	GCAATG	1 cut(s)	742
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	695, 797
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	298, 528, 701
BseMI	GCAATG	1 cut(s)	742
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	2 cut(s)	268, 293
BseXI	GCAGC	7 cut(s)	27, 138, 150, 396, 513, 619, 719
BseYI	CCCAGC	1 cut(s)	344
Bsh1236I	CGCG	2 cut(s)	120, 313
Bsh1285I	CGRYCG	1 cut(s)	594
BshFI	GGCC	5 cut(s)	282, 291, 302, 563, 598
BshNI	GGYRCC	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	594
BsiHKAI	GWGCWC	2 cut(s)	48, 638
BsiSI	CCGG	9 cut(s)	293, 367, 481, 564, 594, 599, 639, 650, 664
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	3 cut(s)	298, 528, 701
BsmAI	GTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	5 cut(s)	282, 291, 302, 563, 598
Bso31I	GGTCTC	1 cut(s)	67
Bsp120I	GGGCCC	1 cut(s)	289
Bsp1286I	GDGCHC	4 cut(s)	48, 268, 293, 638
BspANI	GGCC	5 cut(s)	282, 291, 302, 563, 598
BspFNI	CGCG	2 cut(s)	120, 313
BspLI	GGNNCC	5 cut(s)	133, 291, 479, 533, 706
BspMAI	CTGCAG	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	67
BsrBI	CCGCTC	3 cut(s)	279, 417, 702
BsrDI	GCAATG	1 cut(s)	742
BsrFI	RCCGGY	2 cut(s)	366, 563
BsrI	ACTGG	1 cut(s)	497
BssAI	RCCGGY	2 cut(s)	366, 563
BssECI	CCNNGG	2 cut(s)	695, 797
BssNI	GRCGYC	3 cut(s)	132, 246, 456
BssT1I	CCWWGG	1 cut(s)	797
Bst2UI	CCWGG	1 cut(s)	696
Bst6I	CTCTTC	2 cut(s)	100, 743
BstACI	GRCGYC	3 cut(s)	132, 246, 456
BstBAI	YACGTR	2 cut(s)	426, 514
BstC8I	GCNNGC	7 cut(s)	136, 185, 212, 227, 257, 264, 565
BstDEI	CTNAG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	375
BstFNI	CGCG	2 cut(s)	120, 313
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	3 cut(s)	134, 231, 313
BstMAI	GTCTC	1 cut(s)	67
BstMCI	CGRYCG	1 cut(s)	594
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	4 cut(s)	291, 593, 648, 694
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	2 cut(s)	268, 293
BstUI	CGCG	2 cut(s)	120, 313
BstV1I	GCAGC	7 cut(s)	27, 138, 150, 396, 513, 619, 719
BstV2I	GAAGAC	1 cut(s)	632
BstXI	CCANNNNNNTGG	1 cut(s)	352
BsuRI	GGCC	5 cut(s)	282, 291, 302, 563, 598
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	7 cut(s)	136, 185, 212, 227, 257, 264, 565
CfoI	GCGC	3 cut(s)	134, 231, 313
Cfr10I	RCCGGY	2 cut(s)	366, 563
Cfr13I	GGNCC	7 cut(s)	281, 289, 290, 300, 596, 641, 661
CpoI	CGGWCCG	1 cut(s)	641
CseI	GACGC	4 cut(s)	109, 130, 254, 728
Csp6I	GTAC	2 cut(s)	202, 484
CspI	CGGWCCG	1 cut(s)	641
CviQI	GTAC	2 cut(s)	202, 484
DdeI	CTNAG	1 cut(s)	306
DinI	GGCGCC	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	100, 743
EarI	CTCTTC	2 cut(s)	100, 743
EciI	GGCGGA	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	797
Eco24I	GRGCYC	2 cut(s)	48, 293
Eco31I	GGTCTC	1 cut(s)	67
Eco47I	GGWCC	2 cut(s)	641, 661
Eco53kI	GAGCTC	1 cut(s)	46
Eco72I	CACGTG	1 cut(s)	426
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	797
EcoT38I	GRGCYC	2 cut(s)	48, 293
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	797
FaiI	YATR	3 cut(s)	8, 615, 617
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	163
FauI	CCCGC	2 cut(s)	188, 255
FblI	GTMKAC	1 cut(s)	590
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	2 cut(s)	48, 293
GlaI	GCGC	3 cut(s)	133, 230, 312
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	5 cut(s)	282, 291, 302, 563, 598
HapII	CCGG	9 cut(s)	293, 367, 481, 564, 594, 599, 639, 650, 664
HgaI	GACGC	4 cut(s)	109, 130, 254, 728
HhaI	GCGC	3 cut(s)	134, 231, 313
Hin1I	GRCGYC	3 cut(s)	132, 246, 456
Hin6I	GCGC	3 cut(s)	132, 229, 311
HinP1I	GCGC	3 cut(s)	132, 229, 311
HincII	GTYRAC	3 cut(s)	519, 591, 679
HindII	GTYRAC	3 cut(s)	519, 591, 679
HinfI	GANTC	5 cut(s)	152, 165, 176, 240, 553
HpaII	CCGG	9 cut(s)	293, 367, 481, 564, 594, 599, 639, 650, 664
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	4 cut(s)	317, 519, 591, 679
Hpy188I	TCNGA	4 cut(s)	72, 157, 239, 657
Hpy188III	TCNNGA	4 cut(s)	149, 328, 541, 583
Hpy8I	GTNNAC	4 cut(s)	317, 519, 591, 679
Hpy99I	CGWCG	4 cut(s)	125, 248, 353, 461
HpyAV	CCTTC	1 cut(s)	538
HpyCH4IV	ACGT	4 cut(s)	351, 425, 456, 513
HpyCH4V	TGCA	3 cut(s)	412, 429, 735
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	4 cut(s)	351, 425, 456, 513
Hsp92I	GRCGYC	3 cut(s)	132, 246, 456
HspAI	GCGC	3 cut(s)	132, 229, 311
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	563
KroNI	GCCGGC	1 cut(s)	565
LmnI	GCTCC	8 cut(s)	192, 217, 531, 633, 699, 710, 727, 809
Lsp1109I	GCAGC	7 cut(s)	27, 138, 150, 396, 513, 619, 719
MaeII	ACGT	4 cut(s)	351, 425, 456, 513
MaeIII	GTNAC	1 cut(s)	337
MbiI	CCGCTC	3 cut(s)	279, 417, 702
MboII	GAAGA	4 cut(s)	87, 562, 637, 760
MhlI	GDGCHC	4 cut(s)	48, 268, 293, 638
MluCI	AATT	5 cut(s)	57, 767, 776, 782, 804
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	146, 185
MmeI	TCCRAC	1 cut(s)	753
MnlI	CCTC	8 cut(s)	78, 103, 122, 163, 205, 445, 579, 750
MroNI	GCCGGC	1 cut(s)	563
MspA1I	CMGCKG	3 cut(s)	129, 409, 710
MspI	CCGG	9 cut(s)	293, 367, 481, 564, 594, 599, 639, 650, 664
MspR9I	CCNGG	4 cut(s)	293, 595, 650, 696
MvaI	CCWGG	1 cut(s)	696
MvnI	CGCG	2 cut(s)	120, 313
NaeI	GCCGGC	1 cut(s)	565
NarI	GGCGCC	1 cut(s)	132
NciI	CCSGG	3 cut(s)	293, 595, 650
NgoMIV	GCCGGC	1 cut(s)	563
NlaIV	GGNNCC	5 cut(s)	133, 291, 479, 533, 706
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	337
PdiI	GCCGGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	165, 240, 553
PflMI	CCANNNNNTGG	1 cut(s)	528
PleI	GAGTC	2 cut(s)	146, 184
PluTI	GGCGCC	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	426
PmlI	CACGTG	1 cut(s)	426
PpsI	GAGTC	2 cut(s)	146, 184
Ppu21I	YACGTR	2 cut(s)	426, 514
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	694
PspCI	CACGTG	1 cut(s)	426
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	5 cut(s)	133, 291, 479, 533, 706
PspOMI	GGGCCC	1 cut(s)	289
PspPI	GGNCC	7 cut(s)	281, 289, 290, 300, 596, 641, 661
PstI	CTGCAG	1 cut(s)	414
RsaI	GTAC	2 cut(s)	203, 485
RsaNI	GTAC	2 cut(s)	202, 484
Rsr2I	CGGWCCG	1 cut(s)	641
RsrII	CGGWCCG	1 cut(s)	641
SacI	GAGCTC	1 cut(s)	48
SalI	GTCGAC	1 cut(s)	589
Sau96I	GGNCC	7 cut(s)	281, 289, 290, 300, 596, 641, 661
SchI	GAGTC	2 cut(s)	146, 185
ScrFI	CCNGG	4 cut(s)	293, 595, 650, 696
SduI	GDGCHC	4 cut(s)	48, 268, 293, 638
SfcI	CTRYAG	1 cut(s)	410
SfiI	GGCCNNNNNGGCC	1 cut(s)	288
SfoI	GGCGCC	1 cut(s)	133
SinI	GGWCC	2 cut(s)	641, 661
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	5 cut(s)	57, 767, 776, 782, 804
SspDI	GGCGCC	1 cut(s)	131
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	4 cut(s)	291, 593, 648, 694
StyI	CCWWGG	1 cut(s)	797
TaiI	ACGT	4 cut(s)	354, 428, 459, 516
TaqI	TCGA	6 cut(s)	150, 168, 243, 327, 450, 590
TaqII	GACCGA	1 cut(s)	658
TasI	AATT	5 cut(s)	57, 767, 776, 782, 804
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	3 cut(s)	165, 240, 553
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	7 cut(s)	15, 126, 138, 409, 501, 607, 732
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	46
Van91I	CCANNNNNTGG	1 cut(s)	528
VpaK11BI	GGWCC	2 cut(s)	641, 661
XapI	RAATTY	1 cut(s)	782
XmiI	GTMKAC	1 cut(s)	590
ZraI	GACGTC	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.