Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Reverse (-)

74396458 .. 74397369

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATTTGATGAGCAGTTTCAATGAGAATGCAAGCGATTCAAATTCCAAGTTACCTTCTTCACGGTACAAAGGAGTAGTCCCGCAGCCTAATGGCCGTTGGGGAGCGCAGATATACGAGAAGCACCAGAGAGTATGGTTGGGAACGTTCAAAGGAGAAGAAGAAGCTGCCAAGGCATACGACATTGCTTCACAAAGGTTCCGAGGCCTCGATGCCATCACGAACTTCAAGCAATCCTCATGGAGTGCCACCATAGATGATCATGAAGATGAGGCCTTCTTCTTGCAGTCACATTCCAAGGCCGAGATCGTTGACATGCTTCGAAAACACTCCTACACCAATGAGCTAGAGCTGTTCAAGCACAAGAATCGTGGCAAGAGAATAAAGTACCGTAACATTGATTTGATGGACATTCATATTCAGAAGGAATGGCTGTTCGAGAAGGTGCTAACACCAAGCGATGTGGGGAGGCTAAACCGGTTTGTCATACCGAAACAACAAGCCGAGAAGCATTTTCCGTTGATGGATTCTGAAGCTAAGGGAGCGTTGCTAAATTTTGAGGATGATTTGGGGAATGTGTGGAGGTTTAGGTATTGTTTTTGGAGTAGCAGTCGGAGTTATGTGTTGACAAAAGGGTGGATTCGGTTTGTGAAGGAGAAGAAGCTGAAAGGGGGTGATGTAATTAGGTTTCATGGATCAATTATGGGAGAGGATAAGAAGTTGTTCATTGAGTGTGGGCCAAGAAACATCGACGACGAGGTTTCGGGTTTTCGGGAGAGGACTGGTACGGTCGATGAGCCGTTAATGGCGCCGAGTCGAGATCACGATGGAGTGGTAAGGTTGTTTGGAGTTAACATTGTTGATAGCAACATTTTGGAGAATAGCACATACAATTGCTCTCAATATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

303

Amino Acids

35.15

Weight (kDa)

7.73

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	21 - 69	1.1e-08	AP2 domain
B3	PF02362	146 - 240	2.2e-23	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	808
AciI	CCGC	1 cut(s)	83
AclI	AACGTT	1 cut(s)	146
AclWI	GGATC	1 cut(s)	703
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	43, 553
AcuI	CTGAAG	1 cut(s)	552
AcyI	GRCGYC	1 cut(s)	809
AfaI	GTAC	3 cut(s)	68, 389, 787
AgeI	ACCGGT	1 cut(s)	477
AgsI	TTSAA	5 cut(s)	22, 42, 151, 229, 358
AloI	GAACNNNNNNTCC	2 cut(s)	419, 451
AluBI	AGCT	5 cut(s)	167, 346, 352, 536, 664
AluI	AGCT	5 cut(s)	167, 346, 352, 536, 664
AlwI	GGATC	1 cut(s)	703
AoxI	GGCC	5 cut(s)	94, 205, 273, 300, 737
ApeKI	GCWGC	2 cut(s)	85, 167
ApoI	RAATTY	2 cut(s)	43, 553
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AsiGI	ACCGGT	1 cut(s)	477
Asp700I	GAANNNNTTC	1 cut(s)	722
AspLEI	GCGC	2 cut(s)	109, 811
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	686
AsuII	TTCGAA	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	808
BbvI	GCAGC	2 cut(s)	97, 154
BccI	CCATC	4 cut(s)	224, 400, 517, 821
BceAI	ACGGC	2 cut(s)	81, 784
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BclI	TGATCA	1 cut(s)	259
BfaI	CTAG	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	812
BisI	GCNGC	2 cut(s)	86, 168
BlsI	GCNGC	2 cut(s)	87, 169
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	2 cut(s)	200, 810
BmsI	GCATC	1 cut(s)	202
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	322
BsaHI	GRCGYC	1 cut(s)	809
BsaJI	CCNNGG	3 cut(s)	171, 202, 297
BsaWI	WCCGGW	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bse118I	RCCGGY	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	787
Bse3DI	GCAATG	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	171, 202, 297
BseGI	GGATG	1 cut(s)	568
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	787
BseXI	GCAGC	2 cut(s)	97, 154
Bsh1285I	CGRYCG	1 cut(s)	792
BshFI	GGCC	5 cut(s)	96, 207, 275, 302, 739
BshNI	GGYRCC	1 cut(s)	808
BshTI	ACCGGT	1 cut(s)	477
BsiEI	CGRYCG	1 cut(s)	792
BsiSI	CCGG	1 cut(s)	478
BslFI	GGGAC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	5 cut(s)	96, 207, 275, 302, 739
Bsp119I	TTCGAA	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	259, 306, 695, 820
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	5 cut(s)	96, 207, 275, 302, 739
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	200, 810
BspPI	GGATC	1 cut(s)	703
BspT104I	TTCGAA	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	808
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	787
BssAI	RCCGGY	1 cut(s)	477
BssECI	CCNNGG	3 cut(s)	171, 202, 297
BssMI	GATC	4 cut(s)	259, 306, 695, 820
BssNI	GRCGYC	1 cut(s)	809
BssT1I	CCWWGG	2 cut(s)	171, 297
Bst4CI	ACNGT	3 cut(s)	66, 392, 790
BstACI	GRCGYC	1 cut(s)	809
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	537
BstF5I	GGATG	1 cut(s)	568
BstH2I	RGCGCY	1 cut(s)	812
BstHHI	GCGC	2 cut(s)	109, 811
BstKTI	GATC	4 cut(s)	262, 309, 698, 823
BstMBI	GATC	4 cut(s)	259, 306, 695, 820
BstMCI	CGRYCG	1 cut(s)	792
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 358, 542
BstNSI	RCATGY	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	97, 154
BsuRI	GGCC	5 cut(s)	96, 207, 275, 302, 739
BtgZI	GCGATG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	568
Cac8I	GCNNGC	1 cut(s)	34
CciI	TCATGA	1 cut(s)	262
CfoI	GCGC	2 cut(s)	109, 811
Cfr10I	RCCGGY	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	737
Csp6I	GTAC	3 cut(s)	67, 388, 786
CspAI	ACCGGT	1 cut(s)	477
CspCI	CAANNNNNGTGG	4 cut(s)	352, 387, 444, 479
CviAII	CATG	4 cut(s)	240, 263, 316, 692
CviQI	GTAC	3 cut(s)	67, 388, 786
DdeI	CTNAG	1 cut(s)	537
DinI	GGCGCC	1 cut(s)	810
DpnI	GATC	4 cut(s)	261, 308, 697, 822
DpnII	GATC	4 cut(s)	259, 306, 695, 820
EaeI	YGGCCR	1 cut(s)	94
Eco130I	CCWWGG	2 cut(s)	171, 297
Eco147I	AGGCCT	2 cut(s)	207, 275
Eco57I	CTGAAG	1 cut(s)	552
EcoT14I	CCWWGG	2 cut(s)	171, 297
EgeI	GGCGCC	1 cut(s)	810
EheI	GGCGCC	1 cut(s)	810
ErhI	CCWWGG	2 cut(s)	171, 297
FaeI	CATG	4 cut(s)	243, 266, 319, 695
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	4 cut(s)	239, 262, 315, 691
FauI	CCCGC	1 cut(s)	90
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	86, 168
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	2 cut(s)	86, 168
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	2 cut(s)	108, 810
GluI	GCNGC	2 cut(s)	86, 168
HaeII	RGCGCY	1 cut(s)	812
HaeIII	GGCC	5 cut(s)	96, 207, 275, 302, 739
HapII	CCGG	1 cut(s)	478
HhaI	GCGC	2 cut(s)	109, 811
Hin1I	GRCGYC	1 cut(s)	809
Hin1II	CATG	4 cut(s)	243, 266, 319, 695
Hin6I	GCGC	2 cut(s)	107, 809
HinP1I	GCGC	2 cut(s)	107, 809
HincII	GTYRAC	3 cut(s)	313, 627, 853
HindII	GTYRAC	3 cut(s)	313, 627, 853
HinfI	GANTC	5 cut(s)	38, 367, 527, 640, 814
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	1 cut(s)	478
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	3 cut(s)	313, 627, 853
Hpy188I	TCNGA	4 cut(s)	203, 423, 532, 615
Hpy188III	TCNNGA	6 cut(s)	220, 263, 439, 773, 818, 824
Hpy8I	GTNNAC	3 cut(s)	313, 627, 853
Hpy99I	CGWCG	2 cut(s)	755, 758
HpyAV	CCTTC	5 cut(s)	66, 286, 418, 436, 646
HpyCH4III	ACNGT	3 cut(s)	66, 392, 790
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	32, 286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 358, 542
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	809
Hsp92II	CATG	4 cut(s)	243, 266, 319, 695
HspAI	GCGC	2 cut(s)	107, 809
KasI	GGCGCC	1 cut(s)	808
Ksp22I	TGATCA	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	4 cut(s)	259, 306, 695, 820
LmnI	GCTCC	2 cut(s)	104, 542
LpnPI	CCDG	3 cut(s)	140, 491, 768
Lsp1109I	GCAGC	2 cut(s)	97, 154
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	3 cut(s)	51, 288, 392
MalI	GATC	4 cut(s)	261, 308, 697, 822
MboI	GATC	4 cut(s)	259, 306, 695, 820
MboII	GAAGA	6 cut(s)	51, 170, 173, 271, 278, 670
MfeI	CAATTG	1 cut(s)	892
MluCI	AATT	5 cut(s)	43, 553, 681, 699, 892
Mly113I	GGCGCC	1 cut(s)	809
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	1 cut(s)	593
MroXI	GAANNNNTTC	1 cut(s)	722
MseI	TTAA	2 cut(s)	803, 852
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	1 cut(s)	478
MunI	CAATTG	1 cut(s)	892
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	173, 358, 542
NarI	GGCGCC	1 cut(s)	809
NdeII	GATC	4 cut(s)	259, 306, 695, 820
NlaIII	CATG	4 cut(s)	243, 266, 319, 695
NlaIV	GGNNCC	2 cut(s)	200, 810
NmeAIII	GCCGAG	3 cut(s)	328, 529, 837
NmuCI	GTSAC	1 cut(s)	288
NspI	RCATGY	1 cut(s)	319
NspV	TTCGAA	1 cut(s)	322
PagI	TCATGA	1 cut(s)	262
PceI	AGGCCT	2 cut(s)	207, 275
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	722
PfeI	GAWTC	4 cut(s)	38, 367, 527, 640
PinAI	ACCGGT	1 cut(s)	477
PkrI	GCNGC	2 cut(s)	87, 169
PleI	GAGTC	1 cut(s)	822
PluTI	GGCGCC	1 cut(s)	812
PpsI	GAGTC	1 cut(s)	822
Psp1406I	AACGTT	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	200, 810
PspPI	GGNCC	1 cut(s)	737
RsaI	GTAC	3 cut(s)	68, 389, 787
RsaNI	GTAC	3 cut(s)	67, 388, 786
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	803, 852
SatI	GCNGC	2 cut(s)	86, 168
Sau3AI	GATC	4 cut(s)	259, 306, 695, 820
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	1 cut(s)	823
SfaNI	GCATC	1 cut(s)	202
SfoI	GGCGCC	1 cut(s)	810
SfuI	TTCGAA	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	5 cut(s)	43, 553, 681, 699, 892
SseBI	AGGCCT	2 cut(s)	207, 275
SsiI	CCGC	1 cut(s)	83
SspDI	GGCGCC	1 cut(s)	808
SspMI	CTAG	1 cut(s)	347
StuI	AGGCCT	2 cut(s)	207, 275
StyI	CCWWGG	2 cut(s)	171, 297
TaaI	ACNGT	3 cut(s)	66, 392, 790
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	6 cut(s)	210, 322, 438, 750, 792, 817
TasI	AATT	5 cut(s)	43, 553, 681, 699, 892
TfiI	GAWTC	4 cut(s)	38, 367, 527, 640
Tru1I	TTAA	2 cut(s)	803, 852
Tru9I	TTAA	2 cut(s)	803, 852
TseFI	GTSAC	1 cut(s)	288
TseI	GCWGC	2 cut(s)	85, 167
Tsp45I	GTSAC	1 cut(s)	288
TspDTI	ATGAA	4 cut(s)	279, 404, 680, 715
TspGWI	ACGGA	1 cut(s)	507
XapI	RAATTY	2 cut(s)	43, 553
XceI	RCATGY	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.