Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Forward (+)

5959186 .. 5960130

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1083900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGATTTGATTAGTTGCTGGAATGCGAGCACAAGGGACTACTCAACAATGAATCAAGCAAACGGTGCAAGTTCAAACAAGTTGCCTTCTTCTAGGTACAAAGGAGTAGTGCCGCAGTCAAATGGCAGATGGGGAGCTCAGATATACGAGAAGAGTAATCGTGTGTGGTTGGGAACCTTCTATGATGAAGAAGAAGCTGCTAAAACCTACGACATTGCCTCGCTAAAGATCCGGGGTCTTGATGCTATCACACAGATCAGTCGAAACCAAATGAAACCCTACGAATGTGATGTCACCGAGGCCCTTTTCTTGGAGTCCCATTCCAAGGCTGAGATAGTTGACATGCTTCGAAAACATTCTTATGCCAACGAGCTCGAGATGTACAAGCATAAGTTATACAATGGTTGTGCGGCTTGTGCCCTAGGCCTTGATGATGGCGGAAAGCGTATGAAGTGTTACCATGATTTTATGGACACATGTAGTCGCGAGAGGGAGTTGCTTTTCGAGAAAGTGGCAACACCAAGCGACGTAGGTAGATTGAACCGCATGGTTATACCAAAACGATATGCTGAGAAGCATTTTCAGGTTCATCAGAGTGTAGGGTTTGGTAAAGGAGTGTTATTGAAATTTGAGGATGAGGTGGGTAAACTGTGGAGGTTTGGGTATTGTTATTGGAGTAGCAGTCAGAGTTATGTGTTGAGCAAAGGGTGGATTCGGTTTGTGAAGGAGAAGAAGCTGAAAGTTGGTGATGTTGTGAGGTTTGAGAGATCGGTAGGGGAGGATAAGAAGCTGTTCATTGACTGTAGATCAAGAAACCTCGACATTTCGGGGATCGGGGAGATACATGGTACTGTTGGTGACCCTCCAGCGACGGTTCAAGATGATGGAGTGGTGAGGTTGTTCGGCGTCAACATATCACGGAAACCTGTGCATTGCAGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

315

Amino Acids

35.82

Weight (kDa)

8.82

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	31 - 79	2.3e-06	AP2 domain
B3	PF02362	168 - 271	6e-24	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	486
AciI	CCGC	4 cut(s)	113, 410, 438, 544
AclWI	GGATC	2 cut(s)	223, 839
AcsI	RAATTY	1 cut(s)	626
AcyI	GRCGYC	1 cut(s)	906
AfaI	GTAC	3 cut(s)	98, 383, 850
AfiI	CCNNNNNNNGG	2 cut(s)	310, 325
AflIII	ACRYGT	1 cut(s)	476
AgsI	TTSAA	4 cut(s)	75, 541, 625, 878
AluBI	AGCT	5 cut(s)	137, 197, 373, 736, 790
AluI	AGCT	5 cut(s)	137, 197, 373, 736, 790
Alw21I	GWGCWC	3 cut(s)	32, 139, 375
AlwI	GGATC	2 cut(s)	223, 839
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	300, 424
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	626
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
Asp700I	GAANNNNTTC	2 cut(s)	355, 791
AspA2I	CCTAGG	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	4 cut(s)	286, 758, 869, 904
AsuII	TTCGAA	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	374
AvrII	CCTAGG	1 cut(s)	421
BaeGI	GKGCMC	1 cut(s)	421
BanII	GRGCYC	2 cut(s)	139, 375
Bbv12I	GWGCWC	3 cut(s)	32, 139, 375
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	3 cut(s)	123, 428, 878
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	2 cut(s)	93, 422
BfmI	CTRYAG	1 cut(s)	802
BisI	GCNGC	3 cut(s)	113, 198, 411
BlnI	CCTAGG	1 cut(s)	421
BlsI	GCNGC	3 cut(s)	114, 199, 412
Bme1390I	CCNGG	1 cut(s)	233
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	849
Bpu14I	TTCGAA	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	906
BsaJI	CCNNGG	4 cut(s)	232, 297, 324, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	667, 697
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 325
Bse3DI	GCAATG	2 cut(s)	213, 931
BseDI	CCNNGG	4 cut(s)	232, 297, 324, 421
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	2 cut(s)	310, 325
BseMI	GCAATG	2 cut(s)	213, 931
BseMII	CTCAG	3 cut(s)	152, 321, 561
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	302, 426
BsiHKAI	GWGCWC	3 cut(s)	32, 139, 375
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	232
BslFI	GGGAC	2 cut(s)	50, 301
BslI	CCNNNNNNNGG	2 cut(s)	310, 325
BsmFI	GGGAC	2 cut(s)	50, 301
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	302, 426
BsoBI	CYCGRG	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	349
Bsp1286I	GDGCHC	4 cut(s)	32, 139, 375, 421
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	5 cut(s)	228, 255, 767, 806, 831
Bsp68I	TCGCGA	1 cut(s)	486
BspACI	CCGC	4 cut(s)	113, 410, 438, 544
BspANI	GGCC	2 cut(s)	302, 426
BspCNI	CTCAG	3 cut(s)	151, 322, 562
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	223, 839
BspT104I	TTCGAA	1 cut(s)	349
BsrDI	GCAATG	2 cut(s)	213, 931
BsrGI	TGTACA	1 cut(s)	381
BssECI	CCNNGG	4 cut(s)	232, 297, 324, 421
BssMI	GATC	5 cut(s)	228, 255, 767, 806, 831
BssNI	GRCGYC	1 cut(s)	906
BssT1I	CCWWGG	2 cut(s)	324, 421
Bst4CI	ACNGT	5 cut(s)	65, 651, 803, 853, 874
Bst6I	CTCTTC	1 cut(s)	146
BstACI	GRCGYC	1 cut(s)	906
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	381
BstBI	TTCGAA	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	138, 330, 570
BstEII	GGTNACC	1 cut(s)	857
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	486
BstKTI	GATC	5 cut(s)	231, 258, 770, 809, 834
BstMBI	GATC	5 cut(s)	228, 255, 767, 806, 831
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 416
BstNSI	RCATGY	2 cut(s)	346, 480
BstPI	GGTNACC	1 cut(s)	857
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	802
BstSLI	GKGCMC	1 cut(s)	421
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	184
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	302, 426
BtsCI	GGATG	1 cut(s)	640
BtuMI	TCGCGA	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	301
CseI	GACGC	1 cut(s)	895
Csp6I	GTAC	3 cut(s)	97, 382, 849
CviAII	CATG	5 cut(s)	343, 461, 477, 547, 845
CviJI	RGCY	9 cut(s)	137, 197, 302, 329, 373, 413, 426, 736, 790
CviKI_1	RGCY	9 cut(s)	137, 197, 302, 329, 373, 413, 426, 736, 790
CviQI	GTAC	3 cut(s)	97, 382, 849
DdeI	CTNAG	3 cut(s)	138, 330, 570
DpnI	GATC	5 cut(s)	230, 257, 769, 808, 833
DpnII	GATC	5 cut(s)	228, 255, 767, 806, 831
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	453
Ecl136II	GAGCTC	2 cut(s)	137, 373
Eco130I	CCWWGG	2 cut(s)	324, 421
Eco147I	AGGCCT	1 cut(s)	426
Eco24I	GRGCYC	2 cut(s)	139, 375
Eco53kI	GAGCTC	2 cut(s)	137, 373
Eco88I	CYCGRG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	857
EcoICRI	GAGCTC	2 cut(s)	137, 373
EcoO109I	RGGNCCY	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	857
EcoT14I	CCWWGG	2 cut(s)	324, 421
EcoT38I	GRGCYC	2 cut(s)	139, 375
ErhI	CCWWGG	2 cut(s)	324, 421
FaeI	CATG	5 cut(s)	346, 464, 480, 550, 848
FaqI	GGGAC	2 cut(s)	50, 301
FatI	CATG	5 cut(s)	342, 460, 476, 546, 844
Fnu4HI	GCNGC	3 cut(s)	113, 198, 411
FokI	GGATG	1 cut(s)	647
FriOI	GRGCYC	2 cut(s)	139, 375
Fsp4HI	GCNGC	3 cut(s)	113, 198, 411
FspBI	CTAG	2 cut(s)	93, 422
GluI	GCNGC	3 cut(s)	113, 198, 411
GsuI	CTGGAG	1 cut(s)	849
HaeIII	GGCC	2 cut(s)	302, 426
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	1 cut(s)	895
Hin1I	GRCGYC	1 cut(s)	906
Hin1II	CATG	5 cut(s)	346, 464, 480, 550, 848
HincII	GTYRAC	2 cut(s)	340, 910
HindII	GTYRAC	2 cut(s)	340, 910
HinfI	GANTC	3 cut(s)	52, 314, 712
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	4 cut(s)	286, 758, 869, 904
Hpy166II	GTNNAC	3 cut(s)	340, 647, 910
Hpy188I	TCNGA	3 cut(s)	141, 594, 687
Hpy188III	TCNNGA	6 cut(s)	239, 376, 485, 505, 810, 878
Hpy8I	GTNNAC	3 cut(s)	340, 647, 910
Hpy99I	CGWCG	2 cut(s)	530, 874
HpyAV	CCTTC	3 cut(s)	96, 187, 718
HpyCH4III	ACNGT	5 cut(s)	65, 651, 803, 853, 874
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	3 cut(s)	68, 931, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 416
HpyF3I	CTNAG	3 cut(s)	138, 330, 570
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	1 cut(s)	906
Hsp92II	CATG	5 cut(s)	346, 464, 480, 550, 848
Kzo9I	GATC	5 cut(s)	228, 255, 767, 806, 831
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	5 cut(s)	4, 245, 569, 879, 939
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	93, 422
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	3 cut(s)	292, 455, 857
MalI	GATC	5 cut(s)	230, 257, 769, 808, 833
MboI	GATC	5 cut(s)	228, 255, 767, 806, 831
MboII	GAAGA	5 cut(s)	81, 163, 200, 203, 742
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	4 cut(s)	32, 139, 375, 421
MluCI	AATT	1 cut(s)	626
MlyI	GAGTC	1 cut(s)	323
MroXI	GAANNNNTTC	2 cut(s)	355, 791
MslI	CAYNNNNRTG	2 cut(s)	360, 594
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	28
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	2 cut(s)	65, 416
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	5 cut(s)	228, 255, 767, 806, 831
NlaIII	CATG	5 cut(s)	346, 464, 480, 550, 848
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	2 cut(s)	292, 857
NruI	TCGCGA	1 cut(s)	486
NspI	RCATGY	2 cut(s)	346, 480
NspV	TTCGAA	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	374
PceI	AGGCCT	1 cut(s)	426
PciI	ACATGT	1 cut(s)	476
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	2 cut(s)	355, 791
PfeI	GAWTC	2 cut(s)	52, 712
PkrI	GCNGC	3 cut(s)	114, 199, 412
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PscI	ACATGT	1 cut(s)	476
Psp124BI	GAGCTC	2 cut(s)	139, 375
PspEI	GGTNACC	1 cut(s)	857
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	228
RruI	TCGCGA	1 cut(s)	486
RsaI	GTAC	3 cut(s)	98, 383, 850
RsaNI	GTAC	3 cut(s)	97, 382, 849
RseI	CAYNNNNRTG	2 cut(s)	360, 594
SacI	GAGCTC	2 cut(s)	139, 375
SatI	GCNGC	3 cut(s)	113, 198, 411
Sau3AI	GATC	5 cut(s)	228, 255, 767, 806, 831
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	4 cut(s)	32, 139, 375, 421
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	802
Sfr274I	CTCGAG	1 cut(s)	374
SfuI	TTCGAA	1 cut(s)	349
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	360, 594
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	626
SseBI	AGGCCT	1 cut(s)	426
SsiI	CCGC	4 cut(s)	113, 410, 438, 544
SspMI	CTAG	2 cut(s)	93, 422
SstI	GAGCTC	2 cut(s)	139, 375
StuI	AGGCCT	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	324, 421
TaaI	ACNGT	5 cut(s)	65, 651, 803, 853, 874
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	5 cut(s)	262, 349, 375, 504, 819
TasI	AATT	1 cut(s)	626
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	2 cut(s)	115, 413
TfiI	GAWTC	2 cut(s)	52, 712
TseFI	GTSAC	2 cut(s)	292, 857
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	2 cut(s)	292, 857
TspDTI	ATGAA	6 cut(s)	65, 201, 287, 464, 578, 784
TspGWI	ACGGA	1 cut(s)	934
XapI	RAATTY	1 cut(s)	626
XceI	RCATGY	2 cut(s)	346, 480
XhoI	CTCGAG	1 cut(s)	374
XmaJI	CCTAGG	1 cut(s)	421
XmnI	GAANNNNTTC	2 cut(s)	355, 791
XspI	CTAG	2 cut(s)	93, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.