Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Forward (+)

46394071 .. 46396541

Gene Structure 2471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0289500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGTCAACACTGATCTCGAATCCCGTAACGACCTCCGACCGGCCTCGCGATTCTTCTAGAATACAGCGCAAGAAGAAGAAGAAGCTCCAGGCCAAGCAGGACCACCACCTTCTCGTTCAACACTCCCAAACCAAATGGAAATCCGAAGCCCAGCAGCAAATTTACTCCTCCAAATTGCTCCAGGCGCTGAACCAGGTCTCCGCTGAGCCCAGGAGCCAGTCGTCGTCGTCGTCGTCGTCTTCCTCCACGTGTCCTCCTCCTCGACGGGGTCGGGCCGTCCGTGAGGCCGCCGACCGGGTCCTGGCCGTGGCCGCCAAGGGGAGGACCCGCTGGAGCCGGGCCATTCTCACCAACCGGCTCAAGCTCAAGTTCCGGCAGCACAGGAAGCAGCAGAGGGCGGCGGCGGCCACCGGGACCGGCCGGTTGAAGAAGCAGAAGTTCAGCGTTTTCCGGTTGAAGGGGAAGGGCTTGCCGGCTGTGCAGAGGAAGGTCCGGGTGCTCGGCCGGTTGGTCCCCGGTTGCCGGAAGCAGCCGCTGCCGGTGATTCTAGAAGAGGCTACTGATTATATTGCGGCGTTGGAGATGCAGGTCAGAGCCATGAGCCGGCTCACACAGCTGCTTTCAGTCTCCGGTTCTACTTCCGGCGCCGGCGGATCAAGTTCTTCGCCGCCGCCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

227

Amino Acids

24.97

Weight (kDa)

11.78

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBH1_N	PF26576	51 - 122	1.2e-11	IBH1-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	647
AccII	CGCG	1 cut(s)	51
AclWI	GGATC	1 cut(s)	664
AcoI	YGGCCR	5 cut(s)	306, 312, 408, 421, 505
AcsI	RAATTY	1 cut(s)	162
AcvI	CACGTG	1 cut(s)	252
AcyI	GRCGYC	2 cut(s)	5, 648
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	122, 430, 460
AjnI	CCWGG	5 cut(s)	90, 183, 195, 212, 303
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
AluBI	AGCT	3 cut(s)	88, 367, 619
AluI	AGCT	3 cut(s)	88, 367, 619
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	205, 634
AlwI	GGATC	1 cut(s)	664
AlwNI	CAGNNNCTG	2 cut(s)	190, 538
ApeKI	GCWGC	6 cut(s)	157, 379, 391, 532, 538, 619
ApoI	RAATTY	1 cut(s)	162
AspLEI	GCGC	3 cut(s)	72, 190, 650
AspS9I	GGNCC	8 cut(s)	103, 276, 301, 327, 342, 417, 493, 514
AsuC2I	CCSGG	5 cut(s)	299, 341, 415, 497, 519
AsuHPI	GGTGA	2 cut(s)	343, 556
AvaII	GGWCC	6 cut(s)	103, 301, 327, 417, 493, 514
BanI	GGYRCC	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	213
BbrPI	CACGTG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	6 cut(s)	169, 391, 403, 525, 544, 606
BceAI	ACGGC	2 cut(s)	263, 293
BciT130I	CCWGG	5 cut(s)	92, 185, 197, 214, 305
BcnI	CCSGG	5 cut(s)	299, 341, 415, 497, 519
BcoDI	GTCTC	2 cut(s)	205, 634
BfaI	CTAG	2 cut(s)	60, 551
BfoI	RGCGCY	2 cut(s)	191, 651
BfuAI	ACCTGC	1 cut(s)	580
BlpI	GCTNAGC	1 cut(s)	207
Bme18I	GGWCC	6 cut(s)	103, 301, 327, 417, 493, 514
BmgT120I	GGNCC	8 cut(s)	103, 276, 301, 327, 342, 417, 493, 514
BmiI	GGNNCC	7 cut(s)	218, 302, 329, 338, 418, 516, 649
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	1 cut(s)	576
BmuI	ACTGGG	1 cut(s)	672
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	3 cut(s)	74, 167, 355
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	347, 353
BpuMI	CCSGG	5 cut(s)	299, 341, 415, 497, 519
BsaAI	YACGTR	1 cut(s)	252
BsaHI	GRCGYC	2 cut(s)	5, 648
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	4 cut(s)	212, 309, 318, 517
BsaWI	WCCGGW	2 cut(s)	453, 632
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 241, 271
Bse118I	RCCGGY	9 cut(s)	42, 357, 419, 423, 475, 507, 541, 606, 650
Bse1I	ACTGG	2 cut(s)	220, 678
BseBI	CCWGG	5 cut(s)	92, 185, 197, 214, 305
BseDI	CCNNGG	4 cut(s)	212, 309, 318, 517
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	2 cut(s)	220, 678
BseRI	GAGGAG	3 cut(s)	160, 249, 252
BseX3I	CGGCCG	2 cut(s)	421, 505
BseXI	GCAGC	6 cut(s)	169, 391, 403, 525, 544, 606
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	503
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	4 cut(s)	43, 298, 424, 508
BshNI	GGYRCC	1 cut(s)	647
BsiEI	CGRYCG	4 cut(s)	43, 298, 424, 508
BsiHKAI	GWGCWC	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	430, 500
BsmAI	GTCTC	2 cut(s)	205, 634
BsmFI	GGGAC	2 cut(s)	430, 500
Bso31I	GGTCTC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	213, 504
Bsp143I	GATC	2 cut(s)	15, 656
Bsp1720I	GCTNAGC	1 cut(s)	207
Bsp68I	TCGCGA	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	7 cut(s)	218, 302, 329, 338, 418, 516, 649
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	664
BspT107I	GGYRCC	1 cut(s)	647
BspTNI	GGTCTC	1 cut(s)	205
BsrFI	RCCGGY	9 cut(s)	42, 357, 419, 423, 475, 507, 541, 606, 650
BsrI	ACTGG	2 cut(s)	220, 678
BssAI	RCCGGY	9 cut(s)	42, 357, 419, 423, 475, 507, 541, 606, 650
BssECI	CCNNGG	4 cut(s)	212, 309, 318, 517
BssMI	GATC	2 cut(s)	15, 656
BssNI	GRCGYC	2 cut(s)	5, 648
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	5 cut(s)	92, 185, 197, 214, 305
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	2 cut(s)	5, 648
BstAPI	GCANNNNNTGC	1 cut(s)	538
BstBAI	YACGTR	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	473, 477, 608, 652
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	51
BstH2I	RGCGCY	2 cut(s)	191, 651
BstHHI	GCGC	3 cut(s)	72, 190, 650
BstKTI	GATC	2 cut(s)	18, 659
BstMAI	GTCTC	2 cut(s)	205, 634
BstMBI	GATC	2 cut(s)	15, 656
BstMCI	CGRYCG	4 cut(s)	43, 298, 424, 508
BstMWI	GCNNNNNNNGC	7 cut(s)	187, 314, 388, 407, 481, 538, 616
BstNI	CCWGG	5 cut(s)	92, 185, 197, 214, 305
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	6 cut(s)	169, 391, 403, 525, 544, 606
BstV2I	GAAGAC	1 cut(s)	234
BstZI	CGGCCG	2 cut(s)	421, 505
BtgI	CCRYGG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	11
BtuMI	TCGCGA	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	4 cut(s)	473, 477, 608, 652
CaiI	CAGNNNCTG	2 cut(s)	190, 538
CfoI	GCGC	3 cut(s)	72, 190, 650
Cfr10I	RCCGGY	9 cut(s)	42, 357, 419, 423, 475, 507, 541, 606, 650
Cfr13I	GGNCC	8 cut(s)	103, 276, 301, 327, 342, 417, 493, 514
CsiI	ACCWGGT	1 cut(s)	195
CviAII	CATG	1 cut(s)	601
DdeI	CTNAG	1 cut(s)	207
DinI	GGCGCC	1 cut(s)	649
DpnI	GATC	2 cut(s)	17, 658
DpnII	GATC	2 cut(s)	15, 656
EaeI	YGGCCR	5 cut(s)	306, 312, 408, 421, 505
EagI	CGGCCG	2 cut(s)	421, 505
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	669
EclXI	CGGCCG	2 cut(s)	421, 505
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	205
Eco47I	GGWCC	6 cut(s)	103, 301, 327, 417, 493, 514
Eco52I	CGGCCG	2 cut(s)	421, 505
Eco72I	CACGTG	1 cut(s)	252
EcoO109I	RGGNCCY	2 cut(s)	301, 327
EcoRII	CCWGG	5 cut(s)	90, 183, 195, 212, 303
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	213
EgeI	GGCGCC	1 cut(s)	649
EheI	GGCGCC	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	604
FaiI	YATR	2 cut(s)	570, 602
FaqI	GGGAC	2 cut(s)	430, 500
FatI	CATG	1 cut(s)	600
FauI	CCCGC	1 cut(s)	338
FriOI	GRGCYC	1 cut(s)	213
FspBI	CTAG	2 cut(s)	60, 551
GlaI	GCGC	3 cut(s)	71, 189, 649
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	3 cut(s)	74, 167, 355
HaeII	RGCGCY	2 cut(s)	191, 651
HhaI	GCGC	3 cut(s)	72, 190, 650
Hin1I	GRCGYC	2 cut(s)	5, 648
Hin1II	CATG	1 cut(s)	604
Hin6I	GCGC	3 cut(s)	70, 188, 648
HinP1I	GCGC	3 cut(s)	70, 188, 648
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	22, 53, 547
HphI	GGTGA	2 cut(s)	343, 556
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	40, 148, 596
Hpy188III	TCNNGA	4 cut(s)	19, 50, 60, 551
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	6 cut(s)	229, 232, 235, 238, 241, 270
HpyAV	CCTTC	4 cut(s)	122, 454, 460, 484
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	484, 589
HpyF10VI	GCNNNNNNNGC	7 cut(s)	187, 314, 388, 407, 481, 538, 616
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	251
Hsp92I	GRCGYC	2 cut(s)	5, 648
Hsp92II	CATG	1 cut(s)	604
HspAI	GCGC	3 cut(s)	70, 188, 648
KasI	GGCGCC	1 cut(s)	647
KroI	GCCGGC	3 cut(s)	475, 606, 650
KroNI	GCCGGC	3 cut(s)	477, 608, 652
Kzo9I	GATC	2 cut(s)	15, 656
LmnI	GCTCC	4 cut(s)	93, 186, 216, 336
Lsp1109I	GCAGC	6 cut(s)	169, 391, 403, 525, 544, 606
LweI	GCATC	1 cut(s)	576
MabI	ACCWGGT	1 cut(s)	195
MaeI	CTAG	2 cut(s)	60, 551
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	17, 658
MboI	GATC	2 cut(s)	15, 656
MboII	GAAGA	8 cut(s)	48, 88, 91, 94, 234, 442, 566, 657
MhlI	GDGCHC	2 cut(s)	213, 504
MluCI	AATT	2 cut(s)	162, 176
Mly113I	GGCGCC	1 cut(s)	648
MmeI	TCCRAC	2 cut(s)	63, 561
MreI	CGCCGGCG	1 cut(s)	650
MroNI	GCCGGC	3 cut(s)	475, 606, 650
MspA1I	CMGCKG	4 cut(s)	206, 333, 538, 619
MvaI	CCWGG	5 cut(s)	92, 185, 197, 214, 305
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	7 cut(s)	187, 314, 388, 407, 481, 538, 616
NaeI	GCCGGC	3 cut(s)	477, 608, 652
NarI	GGCGCC	1 cut(s)	648
NciI	CCSGG	5 cut(s)	299, 341, 415, 497, 519
NdeII	GATC	2 cut(s)	15, 656
NgoMIV	GCCGGC	3 cut(s)	475, 606, 650
NlaIII	CATG	1 cut(s)	604
NlaIV	GGNNCC	7 cut(s)	218, 302, 329, 338, 418, 516, 649
NmeAIII	GCCGAG	1 cut(s)	483
NruI	TCGCGA	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	4 cut(s)	230, 233, 236, 280
PdiI	GCCGGC	3 cut(s)	477, 608, 652
PfeI	GAWTC	3 cut(s)	22, 53, 547
PflFI	GACNNNGTC	2 cut(s)	270, 299
PluTI	GGCGCC	1 cut(s)	651
PmaCI	CACGTG	1 cut(s)	252
PmlI	CACGTG	1 cut(s)	252
Ppu21I	YACGTR	1 cut(s)	252
PpuMI	RGGWCCY	2 cut(s)	301, 327
Psp5II	RGGWCCY	2 cut(s)	301, 327
Psp6I	CCWGG	5 cut(s)	90, 183, 195, 212, 303
PspCI	CACGTG	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	5 cut(s)	90, 183, 195, 212, 303
PspN4I	GGNNCC	7 cut(s)	218, 302, 329, 338, 418, 516, 649
PspPI	GGNCC	8 cut(s)	103, 276, 301, 327, 342, 417, 493, 514
PspPPI	RGGWCCY	2 cut(s)	301, 327
PstNI	CAGNNNCTG	2 cut(s)	190, 538
PsyI	GACNNNGTC	2 cut(s)	270, 299
PvuII	CAGCTG	1 cut(s)	619
RruI	TCGCGA	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	15, 656
Sau96I	GGNCC	8 cut(s)	103, 276, 301, 327, 342, 417, 493, 514
SduI	GDGCHC	2 cut(s)	213, 504
SetI	ASST	9 cut(s)	38, 90, 114, 201, 254, 369, 495, 594, 621
SexAI	ACCWGGT	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	576
SfoI	GGCGCC	1 cut(s)	649
SgrAI	CRCCGGYG	1 cut(s)	650
SinI	GGWCC	6 cut(s)	103, 301, 327, 417, 493, 514
SmlI	CTYRAG	2 cut(s)	362, 368
SmoI	CTYRAG	2 cut(s)	362, 368
Sse9I	AATT	2 cut(s)	162, 176
SspDI	GGCGCC	1 cut(s)	647
SspMI	CTAG	2 cut(s)	60, 551
StyI	CCWWGG	1 cut(s)	318
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	20, 265
TasI	AATT	2 cut(s)	162, 176
TauI	GCSGC	9 cut(s)	293, 317, 404, 407, 410, 538, 578, 673, 676
TfiI	GAWTC	3 cut(s)	22, 53, 547
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	6 cut(s)	157, 379, 391, 532, 538, 619
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	18
Tth111I	GACNNNGTC	2 cut(s)	270, 299
VpaK11BI	GGWCC	6 cut(s)	103, 301, 327, 417, 493, 514
XapI	RAATTY	1 cut(s)	162
XbaI	TCTAGA	2 cut(s)	59, 550
XspI	CTAG	2 cut(s)	60, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.