Rmu_ssc0000471.1_g000001
ERF Family

AP2 ERF and B3 domain-containing transcription

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000471.1
Physical Location & Seq
Reverse (-)
1746 .. 2846
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000471.1_g000001.1.cds

Sequence Viewer

Length: 1101 bp
atggatataacaagcagcacaacagatgaaagcacaagcagtgagctctcaatgtcaatttcaccgcctccgagaccaaacaacaagctctccccttcgccgccgcagagcctctgccgcgtcggcagcggcgccagcagcgtcattctcgactccgagaacggaatcgaggccgagtcccgcaagctcccgtcctccaagtacaaaggcgtggtcccccagcccaacggccgctggggcgctcagatttacgagaagcaccagcgcgtctggctgggcaccttcaacggggaggacgaggccgcccgggcatacgacgtcgcggcccagcgctttcgcggccgcgacgccgtgaccaacttcaaacccctagcagagtctaccgacaacgacgacgacgaaatcgaggcagctttcctcaactcccactccaagtccgaaatcgtcgacatgctgaggaagcacacttacaatgacgagctggagcagagcaagcgcaacatgggattcgacgccaacggccagcggcgggcacggggcgagagcggcccaatgggcccggacagggccgctaaggcgcgtgaacagcttttcgagaaagctgtcacgcccagcgacgtgggcaagctgaaccggctggtcatccccaagcaacacgccgagaagcactttccgctgcagaacggaagcacgtgcaagggcgtgttgctaaacttcgaggacgtcggcggcaaagtatggcggttccggtactcctactggaacagcagccagagctacgtgttgaccaaagggtggagccgcttcgtgaaggagaagaatctcaaggccggcgacattgtgagtttccagaggtcgaccgggccggacaagcaactttatatagattggaaggcaaggagcaccggaccgaacccggttcagtccgggccggttcacatggtccggctattcggggtcaacattttcaaaatacctgggagtggctcccctggtgtggacgctcctattggctgcaatgctttggggaagagaatgagggagattgaattgttggaattagaatttagcaagaagccaaggataattggagctttgtaa

Protein Analysis

366

Amino Acids

40.56

Weight (kDa)

9.24

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 321, 726
AccB1I GGYRCC 2 cut(s) 131, 278
AccB7I CCANNNNNTGG 1 cut(s) 795
AccBSI CCGCTC 1 cut(s) 546
AccI GTMKAC 3 cut(s) 380, 447, 857
AccII CGCG 6 cut(s) 120, 267, 323, 339, 345, 580
AcoI YGGCCR 3 cut(s) 229, 340, 520
AcsI RAATTY 1 cut(s) 1064
AcvI CACGTG 1 cut(s) 693
AcyI GRCGYC 5 cut(s) 132, 318, 348, 513, 723
AfaI GTAC 2 cut(s) 203, 752
AfeI AGCGCT 1 cut(s) 332
AfiI CCNNNNNNNGG 6 cut(s) 288, 529, 565, 795, 983, 997
AflIII ACRYGT 1 cut(s) 780
AgsI TTSAA 4 cut(s) 286, 364, 970, 1049
AjiI CACGTC 1 cut(s) 619
AjnI CCWGG 2 cut(s) 976, 991
Alw21I GWGCWC 2 cut(s) 48, 905
Alw26I GTCTC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 306
Aor51HI AGCGCT 1 cut(s) 332
ApaI GGGCCC 1 cut(s) 560
ApeKI GCWGC 7 cut(s) 15, 126, 138, 410, 676, 768, 1014
ApoI RAATTY 1 cut(s) 1064
ArsI GACNNNNNNTTYG 2 cut(s) 198, 230
AspLEI GCGC 6 cut(s) 134, 242, 267, 333, 498, 580
AsuC2I CCSGG 6 cut(s) 307, 308, 560, 862, 917, 928
AsuHPI GGTGA 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 3 cut(s) 214, 908, 943
BaeGI GKGCMC 3 cut(s) 281, 535, 560
BanI GGYRCC 2 cut(s) 131, 278
BanII GRGCYC 2 cut(s) 48, 560
BarI GAAGNNNNNNTAC 2 cut(s) 452, 484
BbrPI CACGTG 1 cut(s) 693
Bbv12I GWGCWC 2 cut(s) 48, 905
BbvCI CCTCAGC 1 cut(s) 455
BbvI GCAGC 7 cut(s) 27, 138, 150, 422, 663, 780, 1001
BceAI ACGGC 3 cut(s) 244, 335, 535
BciT130I CCWGG 2 cut(s) 978, 993
BcnI CCSGG 6 cut(s) 307, 308, 560, 862, 917, 928
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 677
BfoI RGCGCY 3 cut(s) 135, 243, 334
BglI GCCNNNNNGGC 5 cut(s) 123, 237, 308, 555, 575
Bme1390I CCNGG 8 cut(s) 307, 308, 560, 862, 917, 928, 978, 993
Bme18I GGWCC 3 cut(s) 214, 908, 943
BmeT110I CYCGRG 1 cut(s) 306
BmgBI CACGTC 1 cut(s) 619
BmiI GGNNCC 7 cut(s) 133, 216, 280, 558, 746, 800, 988
BmrFI CCNGG 8 cut(s) 307, 308, 560, 862, 917, 928, 978, 993
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 2 cut(s) 455, 573
BpuEI CTTGAG 1 cut(s) 809
BpuMI CCSGG 6 cut(s) 307, 308, 560, 862, 917, 928
BsaAI YACGTR 2 cut(s) 693, 781
BsaHI GRCGYC 5 cut(s) 132, 318, 348, 513, 723
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 4 cut(s) 306, 977, 991, 1079
BsaWI WCCGGW 2 cut(s) 747, 905
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 413, 443
Bsc4I CCNNNNNNNGG 6 cut(s) 288, 529, 565, 795, 983, 997
Bse118I RCCGGY 3 cut(s) 633, 830, 931
Bse1I ACTGG 1 cut(s) 764
Bse3DI GCAATG 1 cut(s) 1024
BseBI CCWGG 2 cut(s) 978, 993
BseDI CCNNGG 4 cut(s) 306, 977, 991, 1079
BseGI GGATG 1 cut(s) 642
BseLI CCNNNNNNNGG 6 cut(s) 288, 529, 565, 795, 983, 997
BseMI GCAATG 1 cut(s) 1024
BseMII CTCAG 2 cut(s) 257, 446
BseNI ACTGG 1 cut(s) 764
BseSI GKGCMC 3 cut(s) 281, 535, 560
BseX3I CGGCCG 2 cut(s) 229, 340
BseXI GCAGC 7 cut(s) 27, 138, 150, 422, 663, 780, 1001
BseYI CCCAGC 5 cut(s) 219, 234, 274, 327, 611
Bsh1236I CGCG 6 cut(s) 120, 267, 323, 339, 345, 580
Bsh1285I CGRYCG 3 cut(s) 232, 343, 861
BshNI GGYRCC 2 cut(s) 131, 278
BsiEI CGRYCG 3 cut(s) 232, 343, 861
BsiHKAI GWGCWC 2 cut(s) 48, 905
BsiHKCI CYCGRG 1 cut(s) 306
BslFI GGGAC 2 cut(s) 163, 200
BslI CCNNNNNNNGG 6 cut(s) 288, 529, 565, 795, 983, 997
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 2 cut(s) 163, 200
Bso31I GGTCTC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 306
Bsp120I GGGCCC 1 cut(s) 556
Bsp1286I GDGCHC 5 cut(s) 48, 281, 535, 560, 905
BspCNI CTCAG 2 cut(s) 256, 447
BspFNI CGCG 6 cut(s) 120, 267, 323, 339, 345, 580
BspLI GGNNCC 7 cut(s) 133, 216, 280, 558, 746, 800, 988
BspMAI CTGCAG 1 cut(s) 681
BspT107I GGYRCC 2 cut(s) 131, 278
BspTNI GGTCTC 1 cut(s) 67
BsrBI CCGCTC 1 cut(s) 546
BsrDI GCAATG 1 cut(s) 1024
BsrFI RCCGGY 3 cut(s) 633, 830, 931
BsrI ACTGG 1 cut(s) 764
BssAI RCCGGY 3 cut(s) 633, 830, 931
BssECI CCNNGG 4 cut(s) 306, 977, 991, 1079
BssNI GRCGYC 5 cut(s) 132, 318, 348, 513, 723
BssT1I CCWWGG 1 cut(s) 1079
Bst2UI CCWGG 2 cut(s) 978, 993
Bst6I CTCTTC 1 cut(s) 1025
BstACI GRCGYC 5 cut(s) 132, 318, 348, 513, 723
BstBAI YACGTR 2 cut(s) 693, 781
BstC8I GCNNGC 7 cut(s) 136, 185, 494, 524, 531, 626, 832
BstDEI CTNAG 3 cut(s) 243, 455, 573
BstF5I GGATG 1 cut(s) 642
BstFNI CGCG 6 cut(s) 120, 267, 323, 339, 345, 580
BstH2I RGCGCY 3 cut(s) 135, 243, 334
BstHHI GCGC 6 cut(s) 134, 242, 267, 333, 498, 580
BstMAI GTCTC 1 cut(s) 67
BstMCI CGRYCG 3 cut(s) 232, 343, 861
BstNI CCWGG 2 cut(s) 978, 993
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 8 cut(s) 305, 306, 558, 860, 915, 926, 976, 991
BstSFI CTRYAG 1 cut(s) 677
BstSLI GKGCMC 3 cut(s) 281, 535, 560
BstUI CGCG 6 cut(s) 120, 267, 323, 339, 345, 580
BstV1I GCAGC 7 cut(s) 27, 138, 150, 422, 663, 780, 1001
BstXI CCANNNNNNTGG 1 cut(s) 619
BstZI CGGCCG 2 cut(s) 229, 340
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 1 cut(s) 642
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 7 cut(s) 136, 185, 494, 524, 531, 626, 832
CciNI GCGGCCGC 1 cut(s) 340
CfoI GCGC 6 cut(s) 134, 242, 267, 333, 498, 580
Cfr10I RCCGGY 3 cut(s) 633, 830, 931
Cfr9I CCCGGG 1 cut(s) 306
CpoI CGGWCCG 1 cut(s) 908
CseI GACGC 6 cut(s) 109, 130, 256, 356, 521, 1010
Csp6I GTAC 2 cut(s) 202, 751
CspI CGGWCCG 1 cut(s) 908
CviAII CATG 3 cut(s) 451, 502, 940
CviQI GTAC 2 cut(s) 202, 751
DdeI CTNAG 3 cut(s) 243, 455, 573
DinI GGCGCC 1 cut(s) 133
EaeI YGGCCR 3 cut(s) 229, 340, 520
EagI CGGCCG 2 cut(s) 229, 340
Eam1104I CTCTTC 1 cut(s) 1025
EarI CTCTTC 1 cut(s) 1025
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 2 cut(s) 229, 340
Eco130I CCWWGG 1 cut(s) 1079
Eco24I GRGCYC 2 cut(s) 48, 560
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 214, 908, 943
Eco47III AGCGCT 1 cut(s) 332
Eco52I CGGCCG 2 cut(s) 229, 340
Eco53kI GAGCTC 1 cut(s) 46
Eco72I CACGTG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 976, 991
EcoT14I CCWWGG 1 cut(s) 1079
EcoT38I GRGCYC 2 cut(s) 48, 560
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 1079
FaeI CATG 3 cut(s) 454, 505, 943
FaiI YATR 8 cut(s) 8, 313, 452, 503, 739, 882, 884, 941
FaqI GGGAC 2 cut(s) 163, 200
FatI CATG 3 cut(s) 450, 501, 939
FauI CCCGC 2 cut(s) 188, 522
FblI GTMKAC 3 cut(s) 380, 447, 857
FokI GGATG 1 cut(s) 629
FriOI GRGCYC 2 cut(s) 48, 560
FspBI CTAG 1 cut(s) 371
GlaI GCGC 6 cut(s) 133, 241, 266, 332, 497, 579
GsaI CCCAGC 5 cut(s) 223, 238, 278, 331, 615
GsuI CTGGAG 1 cut(s) 503
HaeII RGCGCY 3 cut(s) 135, 243, 334
HgaI GACGC 6 cut(s) 109, 130, 256, 356, 521, 1010
HhaI GCGC 6 cut(s) 134, 242, 267, 333, 498, 580
Hin1I GRCGYC 5 cut(s) 132, 318, 348, 513, 723
Hin1II CATG 3 cut(s) 454, 505, 943
Hin6I GCGC 6 cut(s) 132, 240, 265, 331, 496, 578
HinP1I GCGC 6 cut(s) 132, 240, 265, 331, 496, 578
HincII GTYRAC 4 cut(s) 448, 786, 858, 961
HindII GTYRAC 4 cut(s) 448, 786, 858, 961
HinfI GANTC 6 cut(s) 152, 165, 176, 377, 507, 820
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 8 cut(s) 381, 448, 584, 786, 858, 937, 961, 1000
Hpy188I TCNGA 4 cut(s) 72, 157, 246, 439
Hpy188III TCNNGA 4 cut(s) 149, 595, 808, 850
Hpy8I GTNNAC 8 cut(s) 381, 448, 584, 786, 858, 937, 961, 1000
HpyAV CCTTC 4 cut(s) 105, 292, 805, 886
HpyCH4IV ACGT 5 cut(s) 318, 618, 692, 723, 780
HpyCH4V TGCA 3 cut(s) 679, 696, 1017
HpyF3I CTNAG 3 cut(s) 243, 455, 573
HpySE526I ACGT 5 cut(s) 318, 618, 692, 723, 780
Hsp92I GRCGYC 5 cut(s) 132, 318, 348, 513, 723
Hsp92II CATG 3 cut(s) 454, 505, 943
HspAI GCGC 6 cut(s) 132, 240, 265, 331, 496, 578
KasI GGCGCC 1 cut(s) 131
KroI GCCGGC 1 cut(s) 830
KroNI GCCGGC 1 cut(s) 832
LmnI GCTCC 7 cut(s) 192, 484, 798, 900, 992, 1009, 1091
Lsp1109I GCAGC 7 cut(s) 27, 138, 150, 422, 663, 780, 1001
MaeI CTAG 1 cut(s) 371
MaeII ACGT 5 cut(s) 318, 618, 692, 723, 780
MaeIII GTNAC 2 cut(s) 352, 604
MbiI CCGCTC 1 cut(s) 546
MboII GAAGA 2 cut(s) 829, 1042
MhlI GDGCHC 5 cut(s) 48, 281, 535, 560, 905
MluCI AATT 5 cut(s) 57, 1049, 1058, 1064, 1086
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 3 cut(s) 146, 185, 386
MmeI TCCRAC 1 cut(s) 1035
MroNI GCCGGC 1 cut(s) 830
MspA1I CMGCKG 4 cut(s) 129, 234, 526, 676
MspR9I CCNGG 8 cut(s) 307, 308, 560, 862, 917, 928, 978, 993
MvaI CCWGG 2 cut(s) 978, 993
MvnI CGCG 6 cut(s) 120, 267, 323, 339, 345, 580
NaeI GCCGGC 1 cut(s) 832
NarI GGCGCC 1 cut(s) 132
NciI CCSGG 6 cut(s) 307, 308, 560, 862, 917, 928
NgoMIV GCCGGC 1 cut(s) 830
NlaIII CATG 3 cut(s) 454, 505, 943
NlaIV GGNNCC 7 cut(s) 133, 216, 280, 558, 746, 800, 988
NmeAIII GCCGAG 2 cut(s) 199, 685
NmuCI GTSAC 2 cut(s) 352, 604
NotI GCGGCCGC 1 cut(s) 340
NspI RCATGY 1 cut(s) 454
PcsI WCGNNNNNNNCGW 3 cut(s) 294, 396, 402
PdiI GCCGGC 1 cut(s) 832
PfeI GAWTC 3 cut(s) 165, 507, 820
PflMI CCANNNNNTGG 1 cut(s) 795
PleI GAGTC 3 cut(s) 146, 184, 385
PluTI GGCGCC 1 cut(s) 135
PmaCI CACGTG 1 cut(s) 693
PmlI CACGTG 1 cut(s) 693
PpsI GAGTC 3 cut(s) 146, 184, 385
Ppu21I YACGTR 2 cut(s) 693, 781
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 2 cut(s) 976, 991
PspCI CACGTG 1 cut(s) 693
PspFI CCCAGC 5 cut(s) 219, 234, 274, 327, 611
PspGI CCWGG 2 cut(s) 976, 991
PspN4I GGNNCC 7 cut(s) 133, 216, 280, 558, 746, 800, 988
PspOMI GGGCCC 1 cut(s) 556
PstI CTGCAG 1 cut(s) 681
RsaI GTAC 2 cut(s) 203, 752
RsaNI GTAC 2 cut(s) 202, 751
Rsr2I CGGWCCG 1 cut(s) 908
RsrII CGGWCCG 1 cut(s) 908
SacI GAGCTC 1 cut(s) 48
SalI GTCGAC 2 cut(s) 446, 856
SchI GAGTC 3 cut(s) 146, 185, 386
ScrFI CCNGG 8 cut(s) 307, 308, 560, 862, 917, 928, 978, 993
SduI GDGCHC 5 cut(s) 48, 281, 535, 560, 905
SfcI CTRYAG 1 cut(s) 677
SfiI GGCCNNNNNGGCC 1 cut(s) 555
SfoI GGCGCC 1 cut(s) 133
SinI GGWCC 3 cut(s) 214, 908, 943
SmaI CCCGGG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
SrfI GCCCGGGC 1 cut(s) 308
Sse9I AATT 5 cut(s) 57, 1049, 1058, 1064, 1086
SspDI GGCGCC 1 cut(s) 131
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 8 cut(s) 305, 306, 558, 860, 915, 926, 976, 991
StyI CCWWGG 1 cut(s) 1079
TaiI ACGT 5 cut(s) 321, 621, 695, 726, 783
TaqI TCGA 8 cut(s) 150, 168, 405, 447, 510, 594, 717, 857
TaqII GACCGA 1 cut(s) 925
TasI AATT 5 cut(s) 57, 1049, 1058, 1064, 1086
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 3 cut(s) 165, 507, 820
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 2 cut(s) 352, 604
TseI GCWGC 7 cut(s) 15, 126, 138, 410, 676, 768, 1014
Tsp45I GTSAC 2 cut(s) 352, 604
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 2 cut(s) 177, 699
TspMI CCCGGG 1 cut(s) 306
TspRI CASTG 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 795
VpaK11BI GGWCC 3 cut(s) 214, 908, 943
XapI RAATTY 1 cut(s) 1064
XceI RCATGY 1 cut(s) 454
XmaI CCCGGG 1 cut(s) 306
XmiI GTMKAC 3 cut(s) 380, 447, 857
XspI CTAG 1 cut(s) 371
ZraI GACGTC 2 cut(s) 319, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.