Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Forward (+)

6432275 .. 6432879

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1088400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAACCCTACGAACGTGATGTCACCGAGGTTCTTTTCTTGGTGTCTCATTCCAAGGCTGAGATCGTTGACATGCTTCGAAAACATTCTTATGCCAACGAGCTCGAGATTTACAAGTATAAGTTGTACAATGGTGGTGCCGTAGGCCTTGATGATGGTGGAAAGCGTATGAAGCATTACCTTGATTTAAGGGACATGTGTAGTCGCGGGAGGGAATTGCTCTTCGAGAAAGTGGGAACACCAAGCGACGTAGGGAGATTGAACCGCATGGTTATACCAAAACAACATGCCGAGAAGGCATTTTCAGGTTCATCTGAGTGTAGGGAGAAGAAGCTGAAAGTTGGTGATGTTGTGAAGTTTGAGAGATCGGTAGGGGAGGATAAGAAGATGTTCATTTACTGTAGACTTAGAAACCTCGACATGTCGGGGATCAGAGAGATGCATGGTAGGGTCGGTGATCCTCTAAGGACGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

159

Amino Acids

18.23

Weight (kDa)

9.32

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	403
AccII	CGCG	1 cut(s)	207
AciI	CCGC	2 cut(s)	207, 265
AclWI	GGATC	2 cut(s)	437, 452
AfaI	GTAC	1 cut(s)	128
AflIII	ACRYGT	2 cut(s)	195, 420
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	2 cut(s)	103, 334
AluI	AGCT	2 cut(s)	103, 334
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	2 cut(s)	437, 452
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	145
ArsI	GACNNNNNNTTYG	1 cut(s)	38
Asp700I	GAANNNNTTC	2 cut(s)	85, 389
AsuHPI	GGTGA	3 cut(s)	16, 356, 467
AsuII	TTCGAA	1 cut(s)	79
AvaI	CYCGRG	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	400
BglI	GCCNNNNNGGC	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	27, 54
BseDI	CCNNGG	2 cut(s)	27, 54
BseMII	CTCAG	2 cut(s)	51, 306
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	4 cut(s)	63, 365, 429, 457
BspACI	CCGC	2 cut(s)	207, 265
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	2 cut(s)	52, 307
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	437, 452
BspQI	GCTCTTC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	27, 54
BssMI	GATC	4 cut(s)	63, 365, 429, 457
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	401, 472
Bst6I	CTCTTC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	79
BstDEI	CTNAG	4 cut(s)	60, 315, 407, 464
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	4 cut(s)	66, 368, 432, 460
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	4 cut(s)	63, 365, 429, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 296
BstNSI	RCATGY	4 cut(s)	76, 199, 290, 424
BstSFI	CTRYAG	1 cut(s)	400
BstUI	CGCG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	147
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	6 cut(s)	73, 196, 268, 287, 421, 443
CviJI	RGCY	4 cut(s)	59, 103, 147, 334
CviKI_1	RGCY	4 cut(s)	59, 103, 147, 334
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	4 cut(s)	60, 315, 407, 464
DpnI	GATC	4 cut(s)	65, 367, 431, 459
DpnII	GATC	4 cut(s)	63, 365, 429, 457
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	6 cut(s)	76, 199, 271, 290, 424, 446
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	6 cut(s)	72, 195, 267, 286, 420, 442
FauI	CCCGC	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	147
Hin1II	CATG	6 cut(s)	76, 199, 271, 290, 424, 446
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HphI	GGTGA	3 cut(s)	16, 356, 467
Hpy166II	GTNNAC	2 cut(s)	70, 404
Hpy188I	TCNGA	2 cut(s)	316, 434
Hpy188III	TCNNGA	2 cut(s)	106, 226
Hpy8I	GTNNAC	2 cut(s)	70, 404
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	2 cut(s)	401, 472
HpyCH4IV	ACGT	2 cut(s)	16, 249
HpyCH4V	TGCA	1 cut(s)	442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 296
HpyF3I	CTNAG	4 cut(s)	60, 315, 407, 464
HpySE526I	ACGT	2 cut(s)	16, 249
Hsp92II	CATG	6 cut(s)	76, 199, 271, 290, 424, 446
Kzo9I	GATC	4 cut(s)	63, 365, 429, 457
LguI	GCTCTTC	1 cut(s)	227
LpnPI	CCDG	1 cut(s)	291
LweI	GCATC	1 cut(s)	429
MaeII	ACGT	2 cut(s)	16, 249
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	4 cut(s)	65, 367, 431, 459
MboI	GATC	4 cut(s)	63, 365, 429, 457
MboII	GAAGA	3 cut(s)	214, 340, 397
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	1 cut(s)	215
MnlI	CCTC	5 cut(s)	22, 204, 370, 425, 471
Mph1103I	ATGCAT	1 cut(s)	444
MroXI	GAANNNNTTC	2 cut(s)	85, 389
MseI	TTAA	2 cut(s)	188, 475
MslI	CAYNNNNRTG	2 cut(s)	90, 316
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	172, 296
NdeII	GATC	4 cut(s)	63, 365, 429, 457
NlaIII	CATG	6 cut(s)	76, 199, 271, 290, 424, 446
NlaIV	GGNNCC	1 cut(s)	139
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	22
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	4 cut(s)	76, 199, 290, 424
NspV	TTCGAA	1 cut(s)	79
PaeR7I	CTCGAG	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	147
PciI	ACATGT	2 cut(s)	195, 420
PciSI	GCTCTTC	1 cut(s)	227
PdmI	GAANNNNTTC	2 cut(s)	85, 389
PscI	ACATGT	2 cut(s)	195, 420
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	2 cut(s)	90, 316
SacI	GAGCTC	1 cut(s)	105
SapI	GCTCTTC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	188, 475
Sau3AI	GATC	4 cut(s)	63, 365, 429, 457
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	8 cut(s)	19, 33, 105, 183, 252, 310, 336, 417
SfaNI	GCATC	1 cut(s)	429
SfcI	CTRYAG	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	104
SfuI	TTCGAA	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	104
SmiMI	CAYNNNNRTG	2 cut(s)	90, 316
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	1 cut(s)	215
SseBI	AGGCCT	1 cut(s)	147
SsiI	CCGC	2 cut(s)	207, 265
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	401, 472
TaiI	ACGT	2 cut(s)	19, 252
TaqI	TCGA	4 cut(s)	79, 105, 225, 417
TasI	AATT	1 cut(s)	215
TatI	WGTACW	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	188, 475
Tru9I	TTAA	2 cut(s)	188, 475
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	4 cut(s)	17, 185, 300, 382
XceI	RCATGY	4 cut(s)	76, 199, 290, 424
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	2 cut(s)	85, 389
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.