Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Reverse (-)

23394974 .. 23395918

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGATGTGTTAAATGAGAGCACAAGTGAGGCTGCAAATTCAAACAAGTTACCTTCTTCTAGGTACAAGGGAGTTGTCCCGCAGCCAAATGGCAGATGGGGAGCTCAAATATACGAGAAGCACCAGCGTGTGTGGCTAGGAACCTTCAATGCAGAAGAAGAAGCTGCTAAGGCCTATGACATTGCCTCAATAAAGTTCCGAGGCCTCGAAACCATCACAAACTTCAACCAGAATCAGTTGAAGCCTTACATGGATGGTGACCACGAAACCCTTTTCTTGCAATCTCATTCCAAGGCCGAGATCGTCGACATGCTTCGAAAACACTCGTACACCAATGAGCTTGAGATGTACAAGCTCAAGCTGTTCAATGCTGGTGATGATGATGCTGCTAGGAAGAGAATTAAGTGTCACGTTAATTTGATGGAAGGTTATGATCATCAGAGGGAGTGGCTTTTCGAGAAAGTGGCGACGCCAAGCGATGTAGGGAGATTAAACCGTATGGTCATACCAAAACAACATGCAGAGAAGCATTTTCCATTGCATCTGAGTGAGGAATTATGTAAAGGGGTGCTGTTGAATTTTGAGGATCGTGAGGGGAAAGTGTGGAGGCTTCGATATTGTTATTGGAGTAGCAGTCAGAGTTATGTGTTGACGAAAGGGTGGACTCGTTTTGTGAAGGAGAAGAAGTTGAAAGCAGGGGATGTTGTTAGGTTTGAGAGATCGAGAGGGGAGGAGAAGAAGATGTTCATTGACTGTAGACCAAGAAACGTCGAGGTTTCGGGGCTCGGAGATATGGCTAGTAGGGTTGAAGTTGAAGAGCCTTTGTCAAGGGTTCAAGAAGATGATGGAGTGGTAAGGTTGTTTGGAGTTAACATTGTGGAAACATGTAGTTGTATTGTAGACAATAACATGTGTTGGAGGCTTGGAGCAAGAATAAGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

315

Amino Acids

36.36

Weight (kDa)

8.08

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	306, 757, 900
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	594
AcsI	RAATTY	2 cut(s)	37, 577
AcyI	GRCGYC	1 cut(s)	470
AfaI	GTAC	3 cut(s)	65, 329, 350
AflIII	ACRYGT	2 cut(s)	884, 909
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	5 cut(s)	104, 164, 340, 355, 361
AluI	AGCT	5 cut(s)	104, 164, 340, 355, 361
Alw21I	GWGCWC	2 cut(s)	23, 106
AlwI	GGATC	1 cut(s)	594
AoxI	GGCC	3 cut(s)	171, 202, 294
ApeKI	GCWGC	4 cut(s)	32, 82, 164, 386
ApoI	RAATTY	2 cut(s)	37, 577
Asp700I	GAANNNNTTC	2 cut(s)	743, 937
AsuHPI	GGTGA	2 cut(s)	269, 386
AsuII	TTCGAA	1 cut(s)	316
BanII	GRGCYC	2 cut(s)	106, 786
Bbv12I	GWGCWC	2 cut(s)	23, 106
BbvI	GCAGC	4 cut(s)	19, 94, 151, 373
BccI	CCATC	5 cut(s)	90, 221, 248, 415, 839
BclI	TGATCA	1 cut(s)	433
BfaI	CTAG	4 cut(s)	60, 137, 390, 798
BfmI	CTRYAG	1 cut(s)	754
BisI	GCNGC	4 cut(s)	33, 83, 165, 387
BlsI	GCNGC	4 cut(s)	34, 84, 166, 388
BmiI	GGNNCC	1 cut(s)	142
BmsI	GCATC	2 cut(s)	373, 550
Bpu10I	CCTNAGC	1 cut(s)	168
Bpu14I	TTCGAA	1 cut(s)	316
BpuEI	CTTGAG	2 cut(s)	341, 362
BsaHI	GRCGYC	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	199, 291
BsaXI	ACNNNNNCTCC	4 cut(s)	619, 649, 671, 701
Bse3DI	GCAATG	2 cut(s)	180, 536
BseDI	CCNNGG	2 cut(s)	199, 291
BseGI	GGATG	3 cut(s)	10, 259, 706
BseMI	GCAATG	2 cut(s)	180, 536
BseMII	CTCAG	1 cut(s)	536
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	4 cut(s)	19, 94, 151, 373
BshFI	GGCC	3 cut(s)	173, 204, 296
BsiHKAI	GWGCWC	2 cut(s)	23, 106
BslFI	GGGAC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	173, 204, 296
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1286I	GDGCHC	3 cut(s)	23, 106, 786
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	300, 433, 586, 719
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	3 cut(s)	173, 204, 296
BspCNI	CTCAG	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	594
BspQI	GCTCTTC	1 cut(s)	810
BspT104I	TTCGAA	1 cut(s)	316
BsrDI	GCAATG	2 cut(s)	180, 536
BsrGI	TGTACA	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	199, 291
BssMI	GATC	4 cut(s)	300, 433, 586, 719
BssNI	GRCGYC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	497, 755
Bst6I	CTCTTC	2 cut(s)	389, 810
BstACI	GRCGYC	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	168, 545
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	10, 259, 706
BstKTI	GATC	4 cut(s)	303, 436, 589, 722
BstMBI	GATC	4 cut(s)	300, 433, 586, 719
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 170
BstNSI	RCATGY	4 cut(s)	313, 521, 888, 913
BstPI	GGTNACC	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	754
BstV1I	GCAGC	4 cut(s)	19, 94, 151, 373
BsuRI	GGCC	3 cut(s)	173, 204, 296
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	3 cut(s)	10, 259, 706
CseI	GACGC	1 cut(s)	478
Csp6I	GTAC	3 cut(s)	64, 328, 349
CviAII	CATG	5 cut(s)	250, 310, 518, 885, 910
CviQI	GTAC	3 cut(s)	64, 328, 349
DdeI	CTNAG	2 cut(s)	168, 545
DpnI	GATC	4 cut(s)	302, 435, 588, 721
DpnII	GATC	4 cut(s)	300, 433, 586, 719
Eam1104I	CTCTTC	2 cut(s)	389, 810
EarI	CTCTTC	2 cut(s)	389, 810
Ecl136II	GAGCTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	291
Eco147I	AGGCCT	2 cut(s)	173, 204
Eco24I	GRGCYC	2 cut(s)	106, 786
Eco53kI	GAGCTC	1 cut(s)	104
Eco91I	GGTNACC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	2 cut(s)	106, 786
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	5 cut(s)	253, 313, 521, 888, 913
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	5 cut(s)	249, 309, 517, 884, 909
FauI	CCCGC	1 cut(s)	87
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	3 cut(s)	306, 757, 900
Fnu4HI	GCNGC	4 cut(s)	33, 83, 165, 387
FokI	GGATG	3 cut(s)	17, 266, 713
FriOI	GRGCYC	2 cut(s)	106, 786
Fsp4HI	GCNGC	4 cut(s)	33, 83, 165, 387
FspBI	CTAG	4 cut(s)	60, 137, 390, 798
GluI	GCNGC	4 cut(s)	33, 83, 165, 387
HaeIII	GGCC	3 cut(s)	173, 204, 296
HgaI	GACGC	1 cut(s)	478
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	5 cut(s)	253, 313, 521, 888, 913
HincII	GTYRAC	3 cut(s)	307, 651, 871
HindII	GTYRAC	3 cut(s)	307, 651, 871
HinfI	GANTC	2 cut(s)	232, 664
HpaI	GTTAAC	1 cut(s)	871
HphI	GGTGA	2 cut(s)	269, 386
Hpy166II	GTNNAC	7 cut(s)	307, 330, 651, 663, 758, 871, 901
Hpy188I	TCNGA	5 cut(s)	200, 441, 546, 639, 788
Hpy188III	TCNNGA	4 cut(s)	457, 590, 723, 836
Hpy8I	GTNNAC	7 cut(s)	307, 330, 651, 663, 758, 871, 901
Hpy99I	CGWCG	3 cut(s)	308, 472, 773
HpyAV	CCTTC	4 cut(s)	63, 154, 419, 670
HpyCH4III	ACNGT	2 cut(s)	497, 755
HpyCH4IV	ACGT	2 cut(s)	411, 768
HpyCH4V	TGCA	5 cut(s)	35, 152, 280, 521, 541
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 170
HpyF3I	CTNAG	2 cut(s)	168, 545
HpySE526I	ACGT	2 cut(s)	411, 768
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	5 cut(s)	253, 313, 521, 888, 913
Ksp22I	TGATCA	1 cut(s)	433
KspAI	GTTAAC	1 cut(s)	871
Kzo9I	GATC	4 cut(s)	300, 433, 586, 719
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	2 cut(s)	101, 926
LpnPI	CCDG	4 cut(s)	137, 242, 357, 681
Lsp1109I	GCAGC	4 cut(s)	19, 94, 151, 373
LweI	GCATC	2 cut(s)	373, 550
MaeI	CTAG	4 cut(s)	60, 137, 390, 798
MaeII	ACGT	2 cut(s)	411, 768
MaeIII	GTNAC	3 cut(s)	48, 257, 407
MalI	GATC	4 cut(s)	302, 435, 588, 721
MboI	GATC	4 cut(s)	300, 433, 586, 719
MboII	GAAGA	9 cut(s)	48, 167, 170, 406, 694, 748, 751, 827, 851
MhlI	GDGCHC	3 cut(s)	23, 106, 786
MluCI	AATT	5 cut(s)	37, 399, 415, 554, 577
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	1 cut(s)	896
MroXI	GAANNNNTTC	2 cut(s)	743, 937
MseI	TTAA	5 cut(s)	11, 402, 414, 491, 870
MslI	CAYNNNNRTG	2 cut(s)	126, 546
MwoI	GCNNNNNNNGC	2 cut(s)	133, 170
NdeII	GATC	4 cut(s)	300, 433, 586, 719
NlaIII	CATG	5 cut(s)	253, 313, 521, 888, 913
NlaIV	GGNNCC	1 cut(s)	142
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	257, 407
NspI	RCATGY	4 cut(s)	313, 521, 888, 913
NspV	TTCGAA	1 cut(s)	316
OliI	CACNNNNGTG	1 cut(s)	126
PceI	AGGCCT	2 cut(s)	173, 204
PciI	ACATGT	2 cut(s)	884, 909
PciSI	GCTCTTC	1 cut(s)	810
PdmI	GAANNNNTTC	2 cut(s)	743, 937
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	34, 84, 166, 388
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
PscI	ACATGT	2 cut(s)	884, 909
Psp124BI	GAGCTC	1 cut(s)	106
PspEI	GGTNACC	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	142
RsaI	GTAC	3 cut(s)	65, 329, 350
RsaNI	GTAC	3 cut(s)	64, 328, 349
RseI	CAYNNNNRTG	2 cut(s)	126, 546
SacI	GAGCTC	1 cut(s)	106
SalI	GTCGAC	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	5 cut(s)	11, 402, 414, 491, 870
SatI	GCNGC	4 cut(s)	33, 83, 165, 387
Sau3AI	GATC	4 cut(s)	300, 433, 586, 719
SchI	GAGTC	1 cut(s)	658
SduI	GDGCHC	3 cut(s)	23, 106, 786
SfaNI	GCATC	2 cut(s)	373, 550
SfcI	CTRYAG	1 cut(s)	754
SfuI	TTCGAA	1 cut(s)	316
SmiMI	CAYNNNNRTG	2 cut(s)	126, 546
SmlI	CTYRAG	2 cut(s)	341, 356
SmoI	CTYRAG	2 cut(s)	341, 356
Sse9I	AATT	5 cut(s)	37, 399, 415, 554, 577
SseBI	AGGCCT	2 cut(s)	173, 204
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	4 cut(s)	60, 137, 390, 798
SstI	GAGCTC	1 cut(s)	106
StuI	AGGCCT	2 cut(s)	173, 204
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	497, 755
TaiI	ACGT	2 cut(s)	414, 771
TaqI	TCGA	7 cut(s)	207, 306, 316, 456, 613, 722, 771
TasI	AATT	5 cut(s)	37, 399, 415, 554, 577
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	5 cut(s)	11, 402, 414, 491, 870
Tru9I	TTAA	5 cut(s)	11, 402, 414, 491, 870
TseFI	GTSAC	2 cut(s)	257, 407
TseI	GCWGC	4 cut(s)	32, 82, 164, 386
Tsp45I	GTSAC	2 cut(s)	257, 407
TspDTI	ATGAA	2 cut(s)	736, 930
XapI	RAATTY	2 cut(s)	37, 577
XceI	RCATGY	4 cut(s)	313, 521, 888, 913
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XmiI	GTMKAC	3 cut(s)	306, 757, 900
XmnI	GAANNNNTTC	2 cut(s)	743, 937
XspI	CTAG	4 cut(s)	60, 137, 390, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.