Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Reverse (-)

28800215 .. 28801315

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g28030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTCAATCTCACCTCCCCCGAGACCAAACACCCAACACAACCACAACAAGCTCTCCTCGCCGCCGCAGAGCCTTTGCCGCGTCGGCAGCGGAGCTAGCAGCGTCATTCTCGACTCCGAGAACGGCATCGAGGCCGAGTCCCGCAAGCTCCCCTCCTCCAAGTACAAAGGAGTCGTCCCCCAGCCCAACGGCCGCTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTCTGGCTCGGCACCTTCAACGAGGAGGACGAGGCAGCACGCGCCTACGACGTCGCGGCGCAACGCTTCCGCGGCCGTGACGCCGTGACTAACTTCAAGCCCTTAACAGAGTCTTCAACAACCACCACAACCGACAACGACGACGACGAAATCGAAGCCGCCTTCCTCAACTCCCACTCCAAATCCGAAATCGTCGACATGTTACGAAAGCACACTTACAATGACGAGCTGGAGCAGAGCAAGCGCAGCTACGGCTTCGACTCCAACGGCAAGCGGCGGGCCCGGGGCGAGGGCGGCCCATTAACGGGTGCTTTCGGCCCGGACCGCGCCGCGAAAGCGCGTGAGCAGCTTTTCGAGAAAGCTGTCACGCCCAGCGATGTCGGGAAGCTGAACCGGCTGGTCATACCAAAGCAACACGCGGAGAAGCACTTTCCGTTGCAAAGCGGAAGCACGTGCAAAGGCGTGTTGCTCAACTTCGAGGACGTCGGCGGCAAAGTGTGGCGGTTCCGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTGTTGACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAATCTCAAGGCCGGCGACATTGTGAGCTTCCAGAGGTCGACCGGGCCGGACAGGCAGCTTTATATAGATTGGAAGACAAGGACCAGCACTGGGCCGAACCCGGTTCAGGCTGGGCCGGTTCAGATGGTCCGGCTGTTTGGGGTGAACATTTTCAAAGTACCTGGGAGCGGCGGCGCGGCTGGTACTACTGTGGAGGCTCCTATTGGGTGCAATGTTGTGGGGAAGAGAATGAGGGAGTTTGAGTTGTTGGAGTTAGAGTTTAGCAAGAAGCAAAGGATAATTGGAGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009741 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009910 GO:0010033 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048573 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

367

Amino Acids

40.65

Weight (kDa)

9.51

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	53 - 101	1.6e-09	AP2 domain
B3	PF02362	194 - 292	1e-26	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	282, 714
AccB1I	GGYRCC	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	783
AccBSI	CCGCTC	1 cut(s)	975
AccI	GTMKAC	2 cut(s)	423, 845
AcoI	YGGCCR	2 cut(s)	190, 301
AcvI	CACGTG	1 cut(s)	681
AcyI	GRCGYC	3 cut(s)	279, 309, 711
AfaI	GTAC	5 cut(s)	164, 740, 746, 966, 991
AfiI	CCNNNNNNNGG	7 cut(s)	517, 532, 533, 783, 897, 913, 974
AflIII	ACRYGT	2 cut(s)	426, 768
AgsI	TTSAA	4 cut(s)	247, 325, 345, 961
AjnI	CCWGG	1 cut(s)	967
Alw26I	GTCTC	1 cut(s)	16
Ama87I	CYCGRG	2 cut(s)	19, 510
ApaI	GGGCCC	1 cut(s)	511
ApeKI	GCWGC	7 cut(s)	87, 99, 263, 474, 574, 756, 862
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
Asp700I	GAANNNNTTC	1 cut(s)	956
AspLEI	GCGC	8 cut(s)	203, 228, 272, 289, 474, 557, 568, 983
AsuC2I	CCSGG	5 cut(s)	511, 512, 548, 850, 908
AsuHPI	GGTGA	2 cut(s)	3, 961
AsuNHI	GCTAGC	1 cut(s)	95
AvaI	CYCGRG	2 cut(s)	19, 510
AvaII	GGWCC	3 cut(s)	550, 888, 934
BaeGI	GKGCMC	1 cut(s)	511
BaeI	ACNNNNGTAYC	2 cut(s)	981, 1014
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	511
BbrPI	CACGTG	1 cut(s)	681
BbsI	GAAGAC	2 cut(s)	333, 887
BbvI	GCAGC	7 cut(s)	99, 111, 275, 486, 586, 768, 874
BccI	CCATC	1 cut(s)	925
BceAI	ACGGC	6 cut(s)	139, 205, 288, 296, 496, 511
BciT130I	CCWGG	1 cut(s)	969
BcnI	CCSGG	5 cut(s)	511, 512, 548, 850, 908
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	204
BglI	GCCNNNNNGGC	3 cut(s)	84, 198, 859
Bme1390I	CCNGG	6 cut(s)	511, 512, 548, 850, 908, 969
Bme18I	GGWCC	3 cut(s)	550, 888, 934
BmeT110I	CYCGRG	2 cut(s)	19, 510
BmiI	GGNNCC	5 cut(s)	241, 509, 734, 788, 1005
BmrFI	CCNGG	6 cut(s)	511, 512, 548, 850, 908, 969
BmrI	ACTGGG	1 cut(s)	906
BmsI	GCATC	1 cut(s)	135
BmtI	GCTAGC	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	906
BpiI	GAAGAC	2 cut(s)	333, 887
BpmI	CTGGAG	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	797
BpuMI	CCSGG	5 cut(s)	511, 512, 548, 850, 908
BsaAI	YACGTR	2 cut(s)	681, 769
BsaHI	GRCGYC	3 cut(s)	279, 309, 711
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	4 cut(s)	298, 510, 511, 968
BsaWI	WCCGGW	1 cut(s)	735
BsaXI	ACNNNNNCTCC	8 cut(s)	38, 68, 389, 419, 1034, 1049, 1064, 1079
Bsc4I	CCNNNNNNNGG	7 cut(s)	517, 532, 533, 783, 897, 913, 974
Bse118I	RCCGGY	4 cut(s)	621, 789, 818, 922
Bse1I	ACTGG	2 cut(s)	752, 901
Bse3DI	GCAATG	1 cut(s)	1024
BseBI	CCWGG	1 cut(s)	969
BseDI	CCNNGG	4 cut(s)	298, 510, 511, 968
BseLI	CCNNNNNNNGG	7 cut(s)	517, 532, 533, 783, 897, 913, 974
BseMI	GCAATG	1 cut(s)	1024
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	752, 901
BseRI	GAGGAG	3 cut(s)	46, 145, 266
BseSI	GKGCMC	1 cut(s)	511
BseX3I	CGGCCG	2 cut(s)	190, 301
BseXI	GCAGC	7 cut(s)	99, 111, 275, 486, 586, 768, 874
BseYI	CCCAGC	4 cut(s)	180, 195, 599, 917
Bsh1285I	CGRYCG	3 cut(s)	193, 304, 849
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	3 cut(s)	193, 304, 849
BsiHKCI	CYCGRG	2 cut(s)	19, 510
BslFI	GGGAC	2 cut(s)	124, 161
BslI	CCNNNNNNNGG	7 cut(s)	517, 532, 533, 783, 897, 913, 974
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	124, 161
Bso31I	GGTCTC	1 cut(s)	16
BsoBI	CYCGRG	2 cut(s)	19, 510
Bsp120I	GGGCCC	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	511
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	5 cut(s)	241, 509, 734, 788, 1005
BspOI	GCTAGC	1 cut(s)	99
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	16
BsrBI	CCGCTC	1 cut(s)	975
BsrDI	GCAATG	1 cut(s)	1024
BsrFI	RCCGGY	4 cut(s)	621, 789, 818, 922
BsrI	ACTGG	2 cut(s)	752, 901
BssAI	RCCGGY	4 cut(s)	621, 789, 818, 922
BssECI	CCNNGG	4 cut(s)	298, 510, 511, 968
BssNI	GRCGYC	3 cut(s)	279, 309, 711
Bst2UI	CCWGG	1 cut(s)	969
Bst4CI	ACNGT	1 cut(s)	997
Bst6I	CTCTTC	1 cut(s)	1025
BstACI	GRCGYC	3 cut(s)	279, 309, 711
BstBAI	YACGTR	2 cut(s)	681, 769
BstC8I	GCNNGC	7 cut(s)	97, 146, 268, 470, 500, 507, 820
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	8 cut(s)	203, 228, 272, 289, 474, 557, 568, 983
BstMAI	GTCTC	1 cut(s)	16
BstMCI	CGRYCG	3 cut(s)	193, 304, 849
BstNI	CCWGG	1 cut(s)	969
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	6 cut(s)	509, 510, 546, 848, 906, 967
BstSLI	GKGCMC	1 cut(s)	511
BstV1I	GCAGC	7 cut(s)	99, 111, 275, 486, 586, 768, 874
BstV2I	GAAGAC	2 cut(s)	333, 887
BstZI	CGGCCG	2 cut(s)	190, 301
BtgI	CCRYGG	1 cut(s)	298
BtgZI	GCGATG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	894
Cac8I	GCNNGC	7 cut(s)	97, 146, 268, 470, 500, 507, 820
CfoI	GCGC	8 cut(s)	203, 228, 272, 289, 474, 557, 568, 983
Cfr10I	RCCGGY	4 cut(s)	621, 789, 818, 922
Cfr42I	CCGCGG	1 cut(s)	301
Cfr9I	CCCGGG	1 cut(s)	510
CpoI	CGGWCCG	1 cut(s)	550
CseI	GACGC	4 cut(s)	70, 91, 217, 317
Csp6I	GTAC	5 cut(s)	163, 739, 745, 965, 990
CspI	CGGWCCG	1 cut(s)	550
CviAII	CATG	1 cut(s)	427
CviQI	GTAC	5 cut(s)	163, 739, 745, 965, 990
DdeI	CTNAG	1 cut(s)	204
EaeI	YGGCCR	2 cut(s)	190, 301
EagI	CGGCCG	2 cut(s)	190, 301
Eam1104I	CTCTTC	1 cut(s)	1025
EarI	CTCTTC	1 cut(s)	1025
EclXI	CGGCCG	2 cut(s)	190, 301
Eco24I	GRGCYC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	3 cut(s)	550, 888, 934
Eco52I	CGGCCG	2 cut(s)	190, 301
Eco72I	CACGTG	1 cut(s)	681
Eco88I	CYCGRG	2 cut(s)	19, 510
EcoRII	CCWGG	1 cut(s)	967
EcoT38I	GRGCYC	1 cut(s)	511
FaeI	CATG	1 cut(s)	430
FaiI	YATR	4 cut(s)	428, 632, 870, 872
FaqI	GGGAC	2 cut(s)	124, 161
FatI	CATG	1 cut(s)	426
FauI	CCCGC	2 cut(s)	149, 498
FblI	GTMKAC	2 cut(s)	423, 845
FriOI	GRGCYC	1 cut(s)	511
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	8 cut(s)	202, 227, 271, 288, 473, 556, 567, 982
GsaI	CCCAGC	4 cut(s)	184, 199, 603, 921
GsuI	CTGGAG	1 cut(s)	479
HaeII	RGCGCY	1 cut(s)	204
HgaI	GACGC	4 cut(s)	70, 91, 217, 317
HhaI	GCGC	8 cut(s)	203, 228, 272, 289, 474, 557, 568, 983
Hin1I	GRCGYC	3 cut(s)	279, 309, 711
Hin1II	CATG	1 cut(s)	430
Hin6I	GCGC	8 cut(s)	201, 226, 270, 287, 472, 555, 566, 981
HinP1I	GCGC	8 cut(s)	201, 226, 270, 287, 472, 555, 566, 981
HincII	GTYRAC	3 cut(s)	424, 774, 846
HindII	GTYRAC	3 cut(s)	424, 774, 846
HinfI	GANTC	6 cut(s)	113, 137, 171, 338, 488, 808
HphI	GGTGA	2 cut(s)	3, 961
Hpy166II	GTNNAC	4 cut(s)	424, 774, 846, 952
Hpy188I	TCNGA	4 cut(s)	118, 207, 415, 930
Hpy188III	TCNNGA	5 cut(s)	110, 583, 610, 796, 838
Hpy8I	GTNNAC	4 cut(s)	424, 774, 846, 952
Hpy99I	CGWCG	8 cut(s)	86, 281, 284, 371, 374, 377, 425, 716
HpyAV	CCTTC	3 cut(s)	253, 400, 793
HpyCH4III	ACNGT	1 cut(s)	997
HpyCH4IV	ACGT	4 cut(s)	279, 680, 711, 768
HpyCH4V	TGCA	3 cut(s)	667, 684, 1017
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	4 cut(s)	279, 680, 711, 768
Hsp92I	GRCGYC	3 cut(s)	279, 309, 711
Hsp92II	CATG	1 cut(s)	430
HspAI	GCGC	8 cut(s)	201, 226, 270, 287, 472, 555, 566, 981
KroI	GCCGGC	1 cut(s)	818
KroNI	GCCGGC	1 cut(s)	820
KspI	CCGCGG	1 cut(s)	301
LmnI	GCTCC	7 cut(s)	92, 153, 460, 786, 972, 1009, 1091
Lsp1109I	GCAGC	7 cut(s)	99, 111, 275, 486, 586, 768, 874
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	4 cut(s)	279, 680, 711, 768
MaeIII	GTNAC	4 cut(s)	305, 313, 429, 592
MbiI	CCGCTC	1 cut(s)	975
MboII	GAAGA	4 cut(s)	333, 817, 892, 1042
MhlI	GDGCHC	1 cut(s)	511
MluCI	AATT	1 cut(s)	1086
MlyI	GAGTC	5 cut(s)	107, 146, 180, 347, 482
MmeI	TCCRAC	2 cut(s)	516, 1035
MroNI	GCCGGC	1 cut(s)	818
MroXI	GAANNNNTTC	1 cut(s)	956
MseI	TTAA	2 cut(s)	332, 530
MspA1I	CMGCKG	3 cut(s)	90, 195, 300
MspR9I	CCNGG	6 cut(s)	511, 512, 548, 850, 908, 969
MvaI	CCWGG	1 cut(s)	969
NaeI	GCCGGC	1 cut(s)	820
NciI	CCSGG	5 cut(s)	511, 512, 548, 850, 908
NgoMIV	GCCGGC	1 cut(s)	818
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	430
NlaIV	GGNNCC	5 cut(s)	241, 509, 734, 788, 1005
NmeAIII	GCCGAG	2 cut(s)	160, 216
NmuCI	GTSAC	3 cut(s)	305, 313, 592
NspI	RCATGY	1 cut(s)	430
PciI	ACATGT	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	3 cut(s)	255, 372, 378
PdiI	GCCGGC	1 cut(s)	820
PdmI	GAANNNNTTC	1 cut(s)	956
PfeI	GAWTC	1 cut(s)	808
PflMI	CCANNNNNTGG	1 cut(s)	783
PleI	GAGTC	5 cut(s)	107, 145, 179, 346, 482
PmaCI	CACGTG	1 cut(s)	681
PmlI	CACGTG	1 cut(s)	681
PpsI	GAGTC	5 cut(s)	107, 145, 179, 346, 482
Ppu21I	YACGTR	2 cut(s)	681, 769
PscI	ACATGT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	967
PspCI	CACGTG	1 cut(s)	681
PspFI	CCCAGC	4 cut(s)	180, 195, 599, 917
PspGI	CCWGG	1 cut(s)	967
PspN4I	GGNNCC	5 cut(s)	241, 509, 734, 788, 1005
PspOMI	GGGCCC	1 cut(s)	507
RsaI	GTAC	5 cut(s)	164, 740, 746, 966, 991
RsaNI	GTAC	5 cut(s)	163, 739, 745, 965, 990
Rsr2I	CGGWCCG	1 cut(s)	550
RsrII	CGGWCCG	1 cut(s)	550
SacII	CCGCGG	1 cut(s)	301
SalI	GTCGAC	2 cut(s)	422, 844
SaqAI	TTAA	2 cut(s)	332, 530
SchI	GAGTC	5 cut(s)	107, 146, 180, 347, 482
ScrFI	CCNGG	6 cut(s)	511, 512, 548, 850, 908, 969
SduI	GDGCHC	1 cut(s)	511
SfaNI	GCATC	1 cut(s)	135
Sfr303I	CCGCGG	1 cut(s)	301
SgrBI	CCGCGG	1 cut(s)	301
SinI	GGWCC	3 cut(s)	550, 888, 934
SmaI	CCCGGG	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	1 cut(s)	1086
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	6 cut(s)	509, 510, 546, 848, 906, 967
TaaI	ACNGT	1 cut(s)	997
TaiI	ACGT	4 cut(s)	282, 683, 714, 771
TaqI	TCGA	8 cut(s)	111, 129, 381, 423, 486, 582, 705, 845
TasI	AATT	1 cut(s)	1086
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	808
Tru1I	TTAA	2 cut(s)	332, 530
Tru9I	TTAA	2 cut(s)	332, 530
TscAI	CASTG	1 cut(s)	901
TseFI	GTSAC	3 cut(s)	305, 313, 592
TseI	GCWGC	7 cut(s)	87, 99, 263, 474, 574, 756, 862
Tsp45I	GTSAC	3 cut(s)	305, 313, 592
TspGWI	ACGGA	1 cut(s)	651
TspMI	CCCGGG	1 cut(s)	510
TspRI	CASTG	1 cut(s)	901
Van91I	CCANNNNNTGG	1 cut(s)	783
VpaK11BI	GGWCC	3 cut(s)	550, 888, 934
XceI	RCATGY	1 cut(s)	430
XmaI	CCCGGG	1 cut(s)	510
XmiI	GTMKAC	2 cut(s)	423, 845
XmnI	GAANNNNTTC	1 cut(s)	956
XspI	CTAG	1 cut(s)	96
ZraI	GACGTC	2 cut(s)	280, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.