Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Reverse (-)

34845960 .. 34846859

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGATTTGATGAACTGCTTCAATGAGAATGCAAGCGATTCAAATTCCAAGTTACCTTCTTCACGGTACAAAGGAGTAGTCCCGCAGCCTAATGGCCGTTGGGGGGCGCAGATATACGAGAAGCACCAGCGAGTATGGTTGGGAACGTTCAATGGAGAAGAAGAAGCTGCCAAGGCCTACGACATTGCTTCACTAAGGTTTCGAGGCCTCGACGCCATCACCCACTTGAAGCAATCCTCATTGAGCACCACCATAGATGATCACGAGGACGAGACCTTCTTCTTGCAGTCACATTCCAAGGCCGAGATCGTCGACATGCTTCGAAAACACTCCTACACCAATGAGTTAGAGCTGTTCAAGCACAAGAATGCTGGCAAGAGAATGAAGTACCGTGACATTATTCATACTCAGAAGGAATGGCTGTTCGAGAAGGTGCTGACACCAAGCGACGTTGGGAGGCTGAACAGGTTTGTTATACCGAAACAACAAGCCGAGAAGCATTTTCCGTTGATGGATTCTAAAGCTGAGGGAGTGTTGCTAAATTTCGAGGATGATTTGGGGAATGTCTGGAGGTTTAGGTATTGTTTTTGGAGTAGTAGTCAGAGTTATGTATTGACAAAAGGGTGGACTCGGTTTGTGAAGGAGAAGAAGGTGACGGCGGGCGATGTGGTTAGGTTTCATGGATCAAGTAGTATGGGAGATGATAAGAAGCTGTTCATAGAGTGTACGCCAAGAAACATCGACAATGAGGTTTCCGGTTATCCGGAGGTGCCTAGTCCAGTCGAGGAGCCGTTAATGGCGCCGGTTCAAGATCACGATGGAGTTGTAAGGTTGTTTGGAGTTAACATTGAAAGCAACATTGTAGACTGTAGTACGTATAATTGTTTTCAATATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

300

Amino Acids

34.48

Weight (kDa)

6.22

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	21 - 69	7.8e-09	AP2 domain
B3	PF02362	142 - 230	6.3e-24	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	769, 799
AccI	GTMKAC	2 cut(s)	312, 864
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	2 cut(s)	83, 659
AclI	AACGTT	1 cut(s)	146
AclWI	GGATC	1 cut(s)	691
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	2 cut(s)	43, 541
AcyI	GRCGYC	2 cut(s)	213, 800
AfaI	GTAC	4 cut(s)	68, 389, 727, 874
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	8 cut(s)	22, 42, 151, 229, 358, 809, 851, 890
AloI	GAACNNNNNNTCC	2 cut(s)	407, 439
AluBI	AGCT	4 cut(s)	167, 352, 524, 712
AluI	AGCT	4 cut(s)	167, 352, 524, 712
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	691
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	4 cut(s)	94, 174, 205, 300
ApeKI	GCWGC	2 cut(s)	85, 167
ApoI	RAATTY	2 cut(s)	43, 541
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
Asp700I	GAANNNNTTC	2 cut(s)	17, 713
AspLEI	GCGC	2 cut(s)	109, 802
AsuHPI	GGTGA	2 cut(s)	211, 664
AsuII	TTCGAA	1 cut(s)	322
BanI	GGYRCC	2 cut(s)	769, 799
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	248
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	97, 154
BccI	CCATC	3 cut(s)	224, 505, 812
BceAI	ACGGC	3 cut(s)	81, 672, 775
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	266
BfaI	CTAG	1 cut(s)	774
BfmI	CTRYAG	1 cut(s)	868
BfoI	RGCGCY	1 cut(s)	803
BisI	GCNGC	2 cut(s)	86, 168
BlsI	GCNGC	2 cut(s)	87, 169
BmiI	GGNNCC	3 cut(s)	771, 789, 801
BpmI	CTGGAG	1 cut(s)	589
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	322
BsaAI	YACGTR	1 cut(s)	876
BsaHI	GRCGYC	2 cut(s)	213, 800
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	171, 297
BsaWI	WCCGGW	2 cut(s)	755, 763
BsaXI	ACNNNNNCTCC	2 cut(s)	583, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	183
BseAI	TCCGGA	1 cut(s)	763
BseDI	CCNNGG	2 cut(s)	171, 297
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	422, 516
BseNI	ACTGG	1 cut(s)	779
BseRI	GAGGAG	1 cut(s)	800
BseXI	GCAGC	2 cut(s)	97, 154
BshFI	GGCC	4 cut(s)	96, 176, 207, 302
BshNI	GGYRCC	2 cut(s)	769, 799
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	3 cut(s)	756, 764, 803
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	2 cut(s)	34, 373
BsnI	GGCC	4 cut(s)	96, 176, 207, 302
Bso31I	GGTCTC	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp13I	TCCGGA	1 cut(s)	763
Bsp143I	GATC	4 cut(s)	259, 306, 683, 811
BspACI	CCGC	2 cut(s)	83, 659
BspANI	GGCC	4 cut(s)	96, 176, 207, 302
BspCNI	CTCAG	2 cut(s)	421, 517
BspEI	TCCGGA	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	771, 789, 801
BspPI	GGATC	1 cut(s)	691
BspT104I	TTCGAA	1 cut(s)	322
BspT107I	GGYRCC	2 cut(s)	769, 799
BspTNI	GGTCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	779
BssAI	RCCGGY	1 cut(s)	802
BssECI	CCNNGG	2 cut(s)	171, 297
BssMI	GATC	4 cut(s)	259, 306, 683, 811
BssNI	GRCGYC	2 cut(s)	213, 800
BssSI	CACGAG	1 cut(s)	263
BssT1I	CCWWGG	2 cut(s)	171, 297
Bst2BI	CACGAG	1 cut(s)	263
Bst4CI	ACNGT	3 cut(s)	66, 392, 869
BstACI	GRCGYC	2 cut(s)	213, 800
BstBAI	YACGTR	1 cut(s)	876
BstBI	TTCGAA	1 cut(s)	322
BstC8I	GCNNGC	3 cut(s)	34, 373, 661
BstDEI	CTNAG	3 cut(s)	194, 408, 525
BstF5I	GGATG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	803
BstHHI	GCGC	2 cut(s)	109, 802
BstKTI	GATC	4 cut(s)	262, 309, 686, 814
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	4 cut(s)	259, 306, 683, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 358
BstNSI	RCATGY	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	868
BstSNI	TACGTA	1 cut(s)	876
BstV1I	GCAGC	2 cut(s)	97, 154
BsuRI	GGCC	4 cut(s)	96, 176, 207, 302
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	1 cut(s)	556
Cac8I	GCNNGC	3 cut(s)	34, 373, 661
CfoI	GCGC	2 cut(s)	109, 802
Cfr10I	RCCGGY	1 cut(s)	802
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	4 cut(s)	67, 388, 726, 873
CviAII	CATG	2 cut(s)	316, 680
CviQI	GTAC	4 cut(s)	67, 388, 726, 873
DdeI	CTNAG	3 cut(s)	194, 408, 525
DinI	GGCGCC	1 cut(s)	801
DpnI	GATC	4 cut(s)	261, 308, 685, 813
DpnII	GATC	4 cut(s)	259, 306, 683, 811
EaeI	YGGCCR	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	876
Eco130I	CCWWGG	2 cut(s)	171, 297
Eco147I	AGGCCT	2 cut(s)	176, 207
Eco31I	GGTCTC	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	171, 297
EgeI	GGCGCC	1 cut(s)	801
EheI	GGCGCC	1 cut(s)	801
ErhI	CCWWGG	2 cut(s)	171, 297
FaeI	CATG	2 cut(s)	319, 683
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	315, 679
FauI	CCCGC	2 cut(s)	90, 652
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	2 cut(s)	312, 864
Fnu4HI	GCNGC	2 cut(s)	86, 168
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	2 cut(s)	86, 168
FspBI	CTAG	1 cut(s)	774
GlaI	GCGC	2 cut(s)	108, 801
GluI	GCNGC	2 cut(s)	86, 168
GsuI	CTGGAG	1 cut(s)	589
HaeII	RGCGCY	1 cut(s)	803
HaeIII	GGCC	4 cut(s)	96, 176, 207, 302
HapII	CCGG	3 cut(s)	756, 764, 803
HgaI	GACGC	1 cut(s)	221
HhaI	GCGC	2 cut(s)	109, 802
Hin1I	GRCGYC	2 cut(s)	213, 800
Hin1II	CATG	2 cut(s)	319, 683
Hin6I	GCGC	2 cut(s)	107, 800
HinP1I	GCGC	2 cut(s)	107, 800
HincII	GTYRAC	2 cut(s)	313, 844
HindII	GTYRAC	2 cut(s)	313, 844
HinfI	GANTC	3 cut(s)	38, 515, 628
HpaI	GTTAAC	1 cut(s)	844
HpaII	CCGG	3 cut(s)	756, 764, 803
HphI	GGTGA	2 cut(s)	211, 664
Hpy166II	GTNNAC	5 cut(s)	313, 627, 726, 844, 865
Hpy188I	TCNGA	2 cut(s)	411, 603
Hpy188III	TCNNGA	6 cut(s)	263, 427, 568, 764, 809, 815
Hpy8I	GTNNAC	5 cut(s)	313, 627, 726, 844, 865
Hpy99I	CGWCG	3 cut(s)	215, 314, 452
HpyAV	CCTTC	6 cut(s)	66, 286, 406, 424, 634, 643
HpyCH4III	ACNGT	3 cut(s)	66, 392, 869
HpyCH4IV	ACGT	3 cut(s)	146, 450, 875
HpyCH4V	TGCA	2 cut(s)	32, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 358
HpyF3I	CTNAG	3 cut(s)	194, 408, 525
HpySE526I	ACGT	3 cut(s)	146, 450, 875
Hsp92I	GRCGYC	2 cut(s)	213, 800
Hsp92II	CATG	2 cut(s)	319, 683
HspAI	GCGC	2 cut(s)	107, 800
KasI	GGCGCC	1 cut(s)	799
Kpn2I	TCCGGA	1 cut(s)	763
Ksp22I	TGATCA	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	844
Kzo9I	GATC	4 cut(s)	259, 306, 683, 811
LmnI	GCTCC	1 cut(s)	787
LpnPI	CCDG	8 cut(s)	140, 357, 451, 553, 769, 777, 792, 816
Lsp1109I	GCAGC	2 cut(s)	97, 154
MaeI	CTAG	1 cut(s)	774
MaeII	ACGT	3 cut(s)	146, 450, 875
MaeIII	GTNAC	4 cut(s)	51, 288, 392, 652
MalI	GATC	4 cut(s)	261, 308, 685, 813
MboI	GATC	4 cut(s)	259, 306, 683, 811
MboII	GAAGA	5 cut(s)	51, 170, 173, 271, 658
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	3 cut(s)	43, 541, 880
Mly113I	GGCGCC	1 cut(s)	800
MlyI	GAGTC	1 cut(s)	622
MroI	TCCGGA	1 cut(s)	763
MroXI	GAANNNNTTC	2 cut(s)	17, 713
MseI	TTAA	2 cut(s)	794, 843
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	3 cut(s)	756, 764, 803
Mva1269I	GAATGC	2 cut(s)	34, 373
MwoI	GCNNNNNNNGC	2 cut(s)	173, 358
NarI	GGCGCC	1 cut(s)	800
NdeII	GATC	4 cut(s)	259, 306, 683, 811
NlaIII	CATG	2 cut(s)	319, 683
NlaIV	GGNNCC	3 cut(s)	771, 789, 801
NmeAIII	GCCGAG	2 cut(s)	328, 517
NmuCI	GTSAC	3 cut(s)	288, 392, 652
NspI	RCATGY	1 cut(s)	319
NspV	TTCGAA	1 cut(s)	322
PceI	AGGCCT	2 cut(s)	176, 207
PctI	GAATGC	2 cut(s)	34, 373
PdmI	GAANNNNTTC	2 cut(s)	17, 713
PfeI	GAWTC	2 cut(s)	38, 515
PkrI	GCNGC	2 cut(s)	87, 169
PleI	GAGTC	1 cut(s)	622
PluTI	GGCGCC	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	622
Ppu21I	YACGTR	1 cut(s)	876
Psp1406I	AACGTT	1 cut(s)	146
PspN4I	GGNNCC	3 cut(s)	771, 789, 801
RsaI	GTAC	4 cut(s)	68, 389, 727, 874
RsaNI	GTAC	4 cut(s)	67, 388, 726, 873
RseI	CAYNNNNRTG	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	794, 843
SatI	GCNGC	2 cut(s)	86, 168
Sau3AI	GATC	4 cut(s)	259, 306, 683, 811
SchI	GAGTC	1 cut(s)	622
SduI	GDGCHC	1 cut(s)	248
SfcI	CTRYAG	1 cut(s)	868
SfoI	GGCGCC	1 cut(s)	801
SfuI	TTCGAA	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	366
SnaBI	TACGTA	1 cut(s)	876
Sse9I	AATT	3 cut(s)	43, 541, 880
SseBI	AGGCCT	2 cut(s)	176, 207
SsiI	CCGC	2 cut(s)	83, 659
SspDI	GGCGCC	1 cut(s)	799
SspMI	CTAG	1 cut(s)	774
StuI	AGGCCT	2 cut(s)	176, 207
StyI	CCWWGG	2 cut(s)	171, 297
TaaI	ACNGT	3 cut(s)	66, 392, 869
TaiI	ACGT	3 cut(s)	149, 453, 878
TaqI	TCGA	8 cut(s)	202, 210, 312, 322, 426, 546, 741, 783
TasI	AATT	3 cut(s)	43, 541, 880
TfiI	GAWTC	2 cut(s)	38, 515
Tru1I	TTAA	2 cut(s)	794, 843
Tru9I	TTAA	2 cut(s)	794, 843
TseFI	GTSAC	3 cut(s)	288, 392, 652
TseI	GCWGC	2 cut(s)	85, 167
Tsp45I	GTSAC	3 cut(s)	288, 392, 652
TspDTI	ATGAA	5 cut(s)	26, 392, 398, 668, 706
TspGWI	ACGGA	1 cut(s)	495
XapI	RAATTY	2 cut(s)	43, 541
XceI	RCATGY	1 cut(s)	319
XmiI	GTMKAC	2 cut(s)	312, 864
XmnI	GAANNNNTTC	2 cut(s)	17, 713
XspI	CTAG	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.