Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Reverse (-)

82287370 .. 82289982

Gene Structure 2613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG590100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCCCGGAGACGGGAAAAGCAGGCAACTTGACAAAGGATCAGATATCAGATCAGGTTAAGATATCCATGGATTTGATGAGCAGTTTCAATGAGAATGCAAGCGATTCAAATTCCAAGTTACCTTCTTCACGGTACAAAGGAGTAGTCCCGCAGCCTAATGGCCGTTGGGGAGCGCAGATATACGAGAAGCACCAGAGAGTATGGTTGGGAACGTTCAACGGAGAAGAAGAAGCTGCCAAGGCATACGACATTGCTTCACAAAGGTTCCGAGGCCTCGACGCCATCACGAACTGCAAGCAATCCTCATGGAGTGCCACCATAGATGATCATGAAGATGAGGCCTTCTTCTTGCAGTCACATTCCAAGGCCGAGATCGTTGACATGCTTCGAAAACACTCCTACACCAATGAGCTAGAGCTGTTCAAGCACAAGAATCGTGGCAAGAGAATAAAGTACCGTAACATTGATTTGATGGACATTCATATTCAGAAGGAATGGCTGTTCGAGAAGGTGCTAACACCAAGCGATGTGGGGAGGCTAAACCGGTTTGTCATACCGAAACAACAAGCCGAGAAGCATTTTCCGTTGATGGATTCTGAAGCTAAGGGAGCGTTGCTAAATTTTGAGGATGATTTGGGGAATGTGTGGAGGTTTAGGTATTGTTTTTGGAGTAGCAGTCGGAGTTATGTGTTGACAAAAGGGTGGACTCGGTTTGTGAAGGAGAAGAAGCTGAAAGGGGGTGATGTAATTAGGTTTCATGGATCAATTATGGGAGAAGATAAGAAGTTGTTCATAGAGTGTGGGCCAAGAAACATCGACGACGAGGTTTCGGGTTTTCGGGAGAGGACTGGTACGGTCGATGAGCCGTTAATGGCGCCGGGTCGAGATCACGATGGAGTGGTAAGGTTGTTTGGAGTTAACATTGTTGATAGCAACATTTTGGAGAATAGCACATACAATTGCTCTCAATGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

326

Amino Acids

37.4

Weight (kDa)

7.12

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	44 - 92	5.5e-09	AP2 domain
B3	PF02362	169 - 263	5.7e-24	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	877
AciI	CCGC	1 cut(s)	152
AclI	AACGTT	1 cut(s)	215
AclWI	GGATC	2 cut(s)	48, 772
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	2 cut(s)	112, 622
AcuI	CTGAAG	1 cut(s)	621
AcyI	GRCGYC	2 cut(s)	282, 878
AfaI	GTAC	3 cut(s)	137, 458, 856
AfiI	CCNNNNNNNGG	2 cut(s)	13, 14
AgeI	ACCGGT	1 cut(s)	546
AgsI	TTSAA	4 cut(s)	91, 111, 220, 427
AloI	GAACNNNNNNTCC	2 cut(s)	488, 520
AluBI	AGCT	5 cut(s)	236, 415, 421, 605, 733
AluI	AGCT	5 cut(s)	236, 415, 421, 605, 733
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	2 cut(s)	48, 772
AoxI	GGCC	6 cut(s)	3, 163, 274, 342, 369, 806
ApeKI	GCWGC	2 cut(s)	154, 236
ApoI	RAATTY	2 cut(s)	112, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AsiGI	ACCGGT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	791
AspLEI	GCGC	2 cut(s)	178, 880
AspS9I	GGNCC	2 cut(s)	4, 806
AsuC2I	CCSGG	2 cut(s)	8, 882
AsuHPI	GGTGA	1 cut(s)	755
AsuII	TTCGAA	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	877
BbvI	GCAGC	2 cut(s)	166, 223
BccI	CCATC	4 cut(s)	293, 469, 586, 890
BceAI	ACGGC	2 cut(s)	150, 853
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	2 cut(s)	8, 882
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	881
BisI	GCNGC	2 cut(s)	155, 237
BlsI	GCNGC	2 cut(s)	156, 238
Bme1390I	CCNGG	2 cut(s)	8, 882
BmgT120I	GGNCC	2 cut(s)	4, 806
BmiI	GGNNCC	3 cut(s)	6, 269, 879
BmrFI	CCNGG	2 cut(s)	8, 882
Bpu10I	CCTNAGC	1 cut(s)	606
Bpu14I	TTCGAA	1 cut(s)	391
BpuMI	CCSGG	2 cut(s)	8, 882
BsaHI	GRCGYC	2 cut(s)	282, 878
BsaJI	CCNNGG	5 cut(s)	6, 69, 240, 271, 366
BsaWI	WCCGGW	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 14
Bse118I	RCCGGY	1 cut(s)	546
Bse1I	ACTGG	1 cut(s)	856
Bse3DI	GCAATG	1 cut(s)	252
BseDI	CCNNGG	5 cut(s)	6, 69, 240, 271, 366
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	2 cut(s)	13, 14
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	856
BseXI	GCAGC	2 cut(s)	166, 223
Bsh1285I	CGRYCG	1 cut(s)	861
BshFI	GGCC	6 cut(s)	5, 165, 276, 344, 371, 808
BshNI	GGYRCC	1 cut(s)	877
BshTI	ACCGGT	1 cut(s)	546
BsiEI	CGRYCG	1 cut(s)	861
BsiSI	CCGG	3 cut(s)	8, 547, 881
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	13, 14
BsmAI	GTCTC	1 cut(s)	5
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	6 cut(s)	5, 165, 276, 344, 371, 808
Bsp119I	TTCGAA	1 cut(s)	391
Bsp143I	GATC	6 cut(s)	40, 52, 328, 375, 764, 889
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	6 cut(s)	5, 165, 276, 344, 371, 808
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	6, 269, 879
BspPI	GGATC	2 cut(s)	48, 772
BspT104I	TTCGAA	1 cut(s)	391
BspT107I	GGYRCC	1 cut(s)	877
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	856
BssAI	RCCGGY	1 cut(s)	546
BssECI	CCNNGG	5 cut(s)	6, 69, 240, 271, 366
BssMI	GATC	6 cut(s)	40, 52, 328, 375, 764, 889
BssNI	GRCGYC	2 cut(s)	282, 878
BssT1I	CCWWGG	3 cut(s)	69, 240, 366
Bst4CI	ACNGT	3 cut(s)	135, 461, 859
BstACI	GRCGYC	2 cut(s)	282, 878
BstBI	TTCGAA	1 cut(s)	391
BstC8I	GCNNGC	3 cut(s)	25, 103, 299
BstDEI	CTNAG	1 cut(s)	606
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	637
BstH2I	RGCGCY	1 cut(s)	881
BstHHI	GCGC	2 cut(s)	178, 880
BstKTI	GATC	6 cut(s)	43, 55, 331, 378, 767, 892
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	6 cut(s)	40, 52, 328, 375, 764, 889
BstMCI	CGRYCG	1 cut(s)	861
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 427, 611
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	6, 880
BstV1I	GCAGC	2 cut(s)	166, 223
BsuRI	GGCC	6 cut(s)	5, 165, 276, 344, 371, 808
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	543
BtsCI	GGATG	1 cut(s)	637
Cac8I	GCNNGC	3 cut(s)	25, 103, 299
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	178, 880
Cfr10I	RCCGGY	1 cut(s)	546
Cfr13I	GGNCC	2 cut(s)	4, 806
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	3 cut(s)	136, 457, 855
CspAI	ACCGGT	1 cut(s)	546
CspCI	CAANNNNNGTGG	4 cut(s)	421, 456, 513, 548
CviAII	CATG	5 cut(s)	70, 309, 332, 385, 761
CviQI	GTAC	3 cut(s)	136, 457, 855
DdeI	CTNAG	1 cut(s)	606
DinI	GGCGCC	1 cut(s)	879
DpnI	GATC	6 cut(s)	42, 54, 330, 377, 766, 891
DpnII	GATC	6 cut(s)	40, 52, 328, 375, 764, 889
EaeI	YGGCCR	1 cut(s)	163
Eco130I	CCWWGG	3 cut(s)	69, 240, 366
Eco147I	AGGCCT	2 cut(s)	276, 344
Eco32I	GATATC	2 cut(s)	48, 66
Eco57I	CTGAAG	1 cut(s)	621
EcoRV	GATATC	2 cut(s)	48, 66
EcoT14I	CCWWGG	3 cut(s)	69, 240, 366
EgeI	GGCGCC	1 cut(s)	879
EheI	GGCGCC	1 cut(s)	879
ErhI	CCWWGG	3 cut(s)	69, 240, 366
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	5 cut(s)	73, 312, 335, 388, 764
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	5 cut(s)	69, 308, 331, 384, 760
FauI	CCCGC	1 cut(s)	159
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	155, 237
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	2 cut(s)	155, 237
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	2 cut(s)	177, 879
GluI	GCNGC	2 cut(s)	155, 237
HaeII	RGCGCY	1 cut(s)	881
HaeIII	GGCC	6 cut(s)	5, 165, 276, 344, 371, 808
HapII	CCGG	3 cut(s)	8, 547, 881
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	2 cut(s)	178, 880
Hin1I	GRCGYC	2 cut(s)	282, 878
Hin1II	CATG	5 cut(s)	73, 312, 335, 388, 764
Hin6I	GCGC	2 cut(s)	176, 878
HinP1I	GCGC	2 cut(s)	176, 878
HincII	GTYRAC	3 cut(s)	382, 696, 922
HindII	GTYRAC	3 cut(s)	382, 696, 922
HinfI	GANTC	4 cut(s)	107, 436, 596, 709
HpaI	GTTAAC	1 cut(s)	922
HpaII	CCGG	3 cut(s)	8, 547, 881
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	4 cut(s)	382, 696, 708, 922
Hpy188I	TCNGA	6 cut(s)	45, 52, 272, 492, 601, 684
Hpy188III	TCNNGA	6 cut(s)	289, 332, 508, 842, 887, 893
Hpy8I	GTNNAC	4 cut(s)	382, 696, 708, 922
Hpy99I	CGWCG	3 cut(s)	284, 824, 827
HpyAV	CCTTC	5 cut(s)	135, 355, 487, 505, 715
HpyCH4III	ACNGT	3 cut(s)	135, 461, 859
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	101, 297, 355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 427, 611
HpyF3I	CTNAG	1 cut(s)	606
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	2 cut(s)	282, 878
Hsp92II	CATG	5 cut(s)	73, 312, 335, 388, 764
HspAI	GCGC	2 cut(s)	176, 878
KasI	GGCGCC	1 cut(s)	877
Ksp22I	TGATCA	1 cut(s)	328
KspAI	GTTAAC	1 cut(s)	922
Kzo9I	GATC	6 cut(s)	40, 52, 328, 375, 764, 889
LmnI	GCTCC	2 cut(s)	173, 611
LpnPI	CCDG	7 cut(s)	9, 21, 41, 209, 560, 837, 894
Lsp1109I	GCAGC	2 cut(s)	166, 223
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	120, 357, 461
MalI	GATC	6 cut(s)	42, 54, 330, 377, 766, 891
MboI	GATC	6 cut(s)	40, 52, 328, 375, 764, 889
MboII	GAAGA	7 cut(s)	120, 239, 242, 340, 347, 739, 791
MfeI	CAATTG	1 cut(s)	961
MluCI	AATT	5 cut(s)	112, 622, 750, 768, 961
Mly113I	GGCGCC	1 cut(s)	878
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	9 cut(s)	266, 287, 316, 334, 531, 622, 645, 820, 840
MroXI	GAANNNNTTC	1 cut(s)	791
MseI	TTAA	3 cut(s)	60, 872, 921
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	3 cut(s)	8, 547, 881
MspR9I	CCNGG	2 cut(s)	8, 882
MunI	CAATTG	1 cut(s)	961
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	3 cut(s)	242, 427, 611
NarI	GGCGCC	1 cut(s)	878
NciI	CCSGG	2 cut(s)	8, 882
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	6 cut(s)	40, 52, 328, 375, 764, 889
NlaIII	CATG	5 cut(s)	73, 312, 335, 388, 764
NlaIV	GGNNCC	3 cut(s)	6, 269, 879
NmeAIII	GCCGAG	2 cut(s)	397, 598
NmuCI	GTSAC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	391
PagI	TCATGA	1 cut(s)	331
PceI	AGGCCT	2 cut(s)	276, 344
PctI	GAATGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	791
PfeI	GAWTC	3 cut(s)	107, 436, 596
PinAI	ACCGGT	1 cut(s)	546
PkrI	GCNGC	2 cut(s)	156, 238
PleI	GAGTC	1 cut(s)	703
PluTI	GGCGCC	1 cut(s)	881
PpsI	GAGTC	1 cut(s)	703
Psp1406I	AACGTT	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	6, 269, 879
PspPI	GGNCC	2 cut(s)	4, 806
RsaI	GTAC	3 cut(s)	137, 458, 856
RsaNI	GTAC	3 cut(s)	136, 457, 855
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	3 cut(s)	60, 872, 921
SatI	GCNGC	2 cut(s)	155, 237
Sau3AI	GATC	6 cut(s)	40, 52, 328, 375, 764, 889
Sau96I	GGNCC	2 cut(s)	4, 806
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	8, 882
SfoI	GGCGCC	1 cut(s)	879
SfuI	TTCGAA	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	5 cut(s)	112, 622, 750, 768, 961
SseBI	AGGCCT	2 cut(s)	276, 344
SsiI	CCGC	1 cut(s)	152
SspDI	GGCGCC	1 cut(s)	877
SspMI	CTAG	1 cut(s)	416
StuI	AGGCCT	2 cut(s)	276, 344
StyD4I	CCNGG	2 cut(s)	6, 880
StyI	CCWWGG	3 cut(s)	69, 240, 366
TaaI	ACNGT	3 cut(s)	135, 461, 859
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	6 cut(s)	279, 391, 507, 819, 861, 886
TasI	AATT	5 cut(s)	112, 622, 750, 768, 961
TfiI	GAWTC	3 cut(s)	107, 436, 596
Tru1I	TTAA	3 cut(s)	60, 872, 921
Tru9I	TTAA	3 cut(s)	60, 872, 921
TseFI	GTSAC	1 cut(s)	357
TseI	GCWGC	2 cut(s)	154, 236
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	4 cut(s)	348, 473, 749, 784
TspGWI	ACGGA	2 cut(s)	237, 576
XapI	RAATTY	2 cut(s)	112, 622
XceI	RCATGY	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	791
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.