Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Forward (+)

5982154 .. 5983379

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1073700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTATGACTCATCAAATAATGGGGTAAAGGATGCAAGTTCTAACAAGTTGCCTTCTTCTAGGTACAAGGGAGTAGTACCACAGCCCAATGGTAGATGGGGGGCTCAAATATATGAGAAGCACCAACGTGTGTGGTTGGGAACCTTCAATGAAGAAGAAGAAGCTGCTAAGACCTACGACATTGCCTTGCTAAAGTTCCGGGGACTTGCTGCCATCACAAACTTCTGTCAGAGCCAAATAAAACCCTACATAGAAGATGGCAACGAGGCCATTTTCTTGGAATCCCATTCCAAGGCTGAGATCGTTGACATGCTTCGAAAACACTCGTACGTCAACGAGCTTGAAATGTACAAGCATAAGTTGCTGAACGCCGGAGTTCGTGGTGGTGGTCGAAAGCGAAGTAAGTGTCACGTCGATCCAACTGACGCGTGTTATGAGAGGGAGTTGCTTTTCGAGAAGGTGGCGACGCCAAGCGACGTAGGGAGGTTGAATCGTATGGTGATACCAAAACAACAAGCTGAGAAGCATTTTCAGGTTCATGAGAGTGTAGAACTGTGTAAAGGGGTTTTGTTGAATTTTGAGGATGAGGAAGGGAACGTGTGGAGGTTTAGGTATTGTTATTGGAGTAGTAGTCAGAGTTATGTGTTGACCAAGGGATGGACACGTTTTGTGAAGGAGAAGAAGTTGAAAGCTGGTGATGTTTTGAGGTTTCAGAGATCGGTAAGGGAGGATAAGAAGCTGTTCATTGAATGTAGACCTAGAAACGTCGATAGTCTGCGGTTCAGAGAGATACCTGCTGGGCGGGTTGCTGAGCCTTTAGCGGCGGTTCAGGATGATGGAGTGGTGAGGTTGTTCGGAGTTAACATTATGAAAACATGTAACAGTTGCATTGTAGACAATAGCAGGTGTTGGAGGCTTGGAGCTAGTTTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

312

Amino Acids

35.79

Weight (kDa)

9.17

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	20 - 68	1.2e-08	AP2 domain
B3	PF02362	151 - 254	5.4e-26	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	894
Acc36I	ACCTGC	2 cut(s)	802, 894
AccB7I	CCANNNNNTGG	1 cut(s)	657
AccI	GTMKAC	2 cut(s)	754, 894
AccII	CGCG	1 cut(s)	428
AciI	CCGC	4 cut(s)	778, 802, 821, 824
AclWI	GGATC	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	574
AcyI	GRCGYC	1 cut(s)	467
AfaI	GTAC	4 cut(s)	65, 78, 329, 350
AfiI	CCNNNNNNNGG	2 cut(s)	292, 657
AflIII	ACRYGT	5 cut(s)	127, 426, 597, 662, 875
AgsI	TTSAA	6 cut(s)	148, 344, 490, 574, 688, 749
AjiI	CACGTC	1 cut(s)	412
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	6 cut(s)	164, 340, 518, 692, 739, 923
AluI	AGCT	6 cut(s)	164, 340, 518, 692, 739, 923
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	164, 209
ApoI	RAATTY	1 cut(s)	574
ArsI	GACNNNNNNTTYG	2 cut(s)	391, 423
Asp700I	GAANNNNTTC	1 cut(s)	740
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	511, 707, 856
AsuII	TTCGAA	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	151, 196
BccI	CCATC	5 cut(s)	90, 221, 251, 651, 830
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	3 cut(s)	60, 759, 924
BfuAI	ACCTGC	2 cut(s)	802, 894
BisI	GCNGC	3 cut(s)	165, 210, 822
BlpI	GCTNAGC	1 cut(s)	810
BlsI	GCNGC	3 cut(s)	166, 211, 823
Bme1390I	CCNGG	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	22
Bpu1102I	GCTNAGC	1 cut(s)	810
Bpu14I	TTCGAA	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	467
BsaJI	CCNNGG	3 cut(s)	199, 291, 651
BsaXI	ACNNNNNCTCC	4 cut(s)	616, 646, 668, 698
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 657
Bse3DI	GCAATG	1 cut(s)	180
BseDI	CCNNGG	3 cut(s)	199, 291, 651
BseGI	GGATG	4 cut(s)	37, 589, 662, 838
BseLI	CCNNNNNNNGG	2 cut(s)	292, 657
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	3 cut(s)	288, 510, 801
BseXI	GCAGC	2 cut(s)	151, 196
BseYI	CCCAGC	1 cut(s)	797
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	199, 372
BsiWI	CGTACG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	292, 657
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	300, 415, 716
Bsp1720I	GCTNAGC	1 cut(s)	810
BspACI	CCGC	4 cut(s)	778, 802, 821, 824
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	3 cut(s)	289, 511, 802
BspFNI	CGCG	1 cut(s)	428
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	142
BspMI	ACCTGC	2 cut(s)	802, 894
BspPI	GGATC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	348
BssECI	CCNNGG	3 cut(s)	199, 291, 651
BssMI	GATC	3 cut(s)	300, 415, 716
BssNI	GRCGYC	1 cut(s)	467
BssT1I	CCWWGG	2 cut(s)	291, 651
Bst4CI	ACNGT	2 cut(s)	555, 884
BstACI	GRCGYC	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstAUI	TGTACA	1 cut(s)	348
BstBI	TTCGAA	1 cut(s)	316
BstDEI	CTNAG	4 cut(s)	168, 297, 519, 810
BstF5I	GGATG	4 cut(s)	37, 589, 662, 838
BstFNI	CGCG	1 cut(s)	428
BstKTI	GATC	3 cut(s)	303, 418, 719
BstMBI	GATC	3 cut(s)	300, 415, 716
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNSI	RCATGY	2 cut(s)	313, 879
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	151, 196
BstXI	CCANNNNNNTGG	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	269
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	4 cut(s)	37, 589, 662, 838
BveI	ACCTGC	2 cut(s)	802, 894
CciI	TCATGA	1 cut(s)	538
CseI	GACGC	2 cut(s)	434, 475
Csp6I	GTAC	4 cut(s)	64, 77, 328, 349
CspCI	CAANNNNNGTGG	2 cut(s)	113, 148
CviAII	CATG	3 cut(s)	310, 539, 876
CviQI	GTAC	4 cut(s)	64, 77, 328, 349
DdeI	CTNAG	4 cut(s)	168, 297, 519, 810
DpnI	GATC	3 cut(s)	302, 417, 718
DpnII	GATC	3 cut(s)	300, 415, 716
Eco130I	CCWWGG	2 cut(s)	291, 651
Eco24I	GRGCYC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	291, 651
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	2 cut(s)	291, 651
FaeI	CATG	3 cut(s)	313, 542, 879
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	3 cut(s)	309, 538, 875
FauI	CCCGC	1 cut(s)	795
FblI	GTMKAC	2 cut(s)	754, 894
Fnu4HI	GCNGC	3 cut(s)	165, 210, 822
FokI	GGATG	4 cut(s)	44, 596, 669, 845
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	165, 210, 822
FspBI	CTAG	3 cut(s)	60, 759, 924
GluI	GCNGC	3 cut(s)	165, 210, 822
GsaI	CCCAGC	1 cut(s)	801
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	199, 372
HgaI	GACGC	2 cut(s)	434, 475
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	313, 542, 879
HincII	GTYRAC	4 cut(s)	307, 334, 648, 862
HindII	GTYRAC	4 cut(s)	307, 334, 648, 862
HinfI	GANTC	3 cut(s)	8, 281, 490
HpaI	GTTAAC	1 cut(s)	862
HpaII	CCGG	2 cut(s)	199, 372
HphI	GGTGA	3 cut(s)	511, 707, 856
Hpy166II	GTNNAC	6 cut(s)	307, 334, 648, 755, 862, 895
Hpy188I	TCNGA	5 cut(s)	231, 636, 714, 785, 857
Hpy188III	TCNNGA	3 cut(s)	454, 539, 830
Hpy8I	GTNNAC	6 cut(s)	307, 334, 648, 755, 862, 895
Hpy99I	CGWCG	4 cut(s)	416, 469, 479, 770
HpyAV	CCTTC	5 cut(s)	63, 154, 451, 584, 667
HpyCH4III	ACNGT	2 cut(s)	555, 884
HpyCH4IV	ACGT	7 cut(s)	127, 330, 411, 477, 597, 664, 765
HpyCH4V	TGCA	2 cut(s)	35, 888
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	4 cut(s)	168, 297, 519, 810
HpySE526I	ACGT	7 cut(s)	127, 330, 411, 477, 597, 664, 765
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	3 cut(s)	313, 542, 879
KspAI	GTTAAC	1 cut(s)	862
Kzo9I	GATC	3 cut(s)	300, 415, 716
LmnI	GCTCC	1 cut(s)	920
LpnPI	CCDG	8 cut(s)	212, 385, 518, 678, 783, 807, 815, 889
Lsp1109I	GCAGC	2 cut(s)	151, 196
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	3 cut(s)	60, 759, 924
MaeII	ACGT	7 cut(s)	127, 330, 411, 477, 597, 664, 765
MaeIII	GTNAC	2 cut(s)	407, 878
MalI	GATC	3 cut(s)	302, 417, 718
MboI	GATC	3 cut(s)	300, 415, 716
MboII	GAAGA	6 cut(s)	48, 164, 167, 170, 266, 691
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	1 cut(s)	574
MluI	ACGCGT	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	2
MmeI	TCCRAC	2 cut(s)	443, 890
MroXI	GAANNNNTTC	1 cut(s)	740
MseI	TTAA	2 cut(s)	861, 929
MslI	CAYNNNNRTG	2 cut(s)	126, 543
MspI	CCGG	2 cut(s)	199, 372
MspR9I	CCNGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	1 cut(s)	361
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	3 cut(s)	300, 415, 716
NlaIII	CATG	3 cut(s)	313, 542, 879
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	407
NspI	RCATGY	2 cut(s)	313, 879
NspV	TTCGAA	1 cut(s)	316
OliI	CACNNNNGTG	1 cut(s)	126
PagI	TCATGA	1 cut(s)	538
PaqCI	CACCTGC	1 cut(s)	894
PciI	ACATGT	1 cut(s)	875
PdmI	GAANNNNTTC	1 cut(s)	740
PfeI	GAWTC	2 cut(s)	281, 490
Pfl23II	CGTACG	1 cut(s)	327
PflMI	CCANNNNNTGG	1 cut(s)	657
PkrI	GCNGC	3 cut(s)	166, 211, 823
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PscI	ACATGT	1 cut(s)	875
PspFI	CCCAGC	1 cut(s)	797
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	142
RsaI	GTAC	4 cut(s)	65, 78, 329, 350
RsaNI	GTAC	4 cut(s)	64, 77, 328, 349
RseI	CAYNNNNRTG	2 cut(s)	126, 543
SaqAI	TTAA	2 cut(s)	861, 929
SatI	GCNGC	3 cut(s)	165, 210, 822
Sau3AI	GATC	3 cut(s)	300, 415, 716
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	316
SmiMI	CAYNNNNRTG	2 cut(s)	126, 543
Sse9I	AATT	1 cut(s)	574
SsiI	CCGC	4 cut(s)	778, 802, 821, 824
SspMI	CTAG	3 cut(s)	60, 759, 924
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	2 cut(s)	291, 651
TaaI	ACNGT	2 cut(s)	555, 884
TaiI	ACGT	7 cut(s)	130, 333, 414, 480, 600, 667, 768
TaqI	TCGA	5 cut(s)	316, 391, 414, 453, 768
TasI	AATT	1 cut(s)	574
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	824
TfiI	GAWTC	2 cut(s)	281, 490
Tru1I	TTAA	2 cut(s)	861, 929
Tru9I	TTAA	2 cut(s)	861, 929
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	2 cut(s)	164, 209
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	4 cut(s)	165, 527, 733, 884
Van91I	CCANNNNNTGG	1 cut(s)	657
XapI	RAATTY	1 cut(s)	574
XceI	RCATGY	2 cut(s)	313, 879
XmiI	GTMKAC	2 cut(s)	754, 894
XmnI	GAANNNNTTC	1 cut(s)	740
XspI	CTAG	3 cut(s)	60, 759, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.