Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002443

Physical Location & Seq

Genomic Coordinates Forward (+)

6032145 .. 6033080

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1084100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGATTTGATGAGTTGCTGGAATAGAAGCACAAGGGACTACTCAACAGTGATTGGAGCAAAGGCTGCCAGTTCAAACAAGTTGCCTTCTTCTAGCTACAAAGGAGTAGTGCCCCAGTCAAATGGCAGATGGGGAGCTCAAATATACGAGAAGAGTCATCGTGTGTGGTTGGGAACCTTCGATGATGAAGAAGAAGCTGCTAAAACCTACAACATTGCTTCGCTAAAGTTCCGGGGTCTTGATGCCATCACAAATTTCAGTCCGAACCAAATGACACCCTACGAACGTGATGTCACTGAGGCTCTTTTCTTGGAGTCCCATTCCAAGGCTGAGATTGTTGACATGCTTCGAAAACATTCTTATGCCAACGAGCTCGAGATGTACAAGCATAAGTTGTACAATGGTGGTGCCCTAGGCCTTGATGCCGGCGGAAAGCGTATGAAGTGTCACCTTGATTTAATGGACACATGTAGTAGCGAGAGGGAGCTGCTTTTCGAGAAAGTGGCAACACCAAGCGATGTAGGGAGATTGAACCGCATGGTTATACCAAAACAACATGCCGAGAAGCATTTTCAGGTTCATCTGAGTGTAGGGTTTGGTAAGGGGGTGTTGTTGAAATTTGAGGATGAGTTGGGTAATGTGTGGAGGTTTGGGTATTGTTATTGGAGTAGTAGTCAGAGCTATGTGTTGAGCAAAGGGTGGATTCGCTTTGTGAAGGAGAAGAAGCTGAAAGCTGGTGATGTTGTGAGGTTTGAGAGATCAGTAGGGGAGGATAAGAAGCTGTTCATTGACTGTAGACCAAGAAACGTCGACGTGTCGGGGATCAGGGAGATGCATGGTAGGGTTGGTCAGCCTTTAGGGACGGCTCAAGATGATGGAATGGTGAGATTGTTCGGAGTTAACATACAACCTTCTACCTGGCCTCGGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2 B3

Protein Analysis

312

Amino Acids

35.39

Weight (kDa)

9.02

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	32 - 79	1e-05	AP2 domain
B3	PF02362	165 - 268	8.3e-25	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002443)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13260 AT1G25560 AT1G68840 AT1G68840 AT3G25730
fragaria_vesca	FvH4_4g28030 FvH4_6g45390
malus_domestica	MD09G1070900.v1.1 MD09G1083900.v1.1 MD09G1084000.v1.1 MD09G1084100.v1.1 MD09G1088400.v1.1 MD13G1046100.v1.1 MD16G1047700.v1.1 MD17G1073700.v1.1 MD17G1073800.v1.1
prunus_persica	Prupe.1G305900_v2.0.a1 Prupe.3G240000_v2.0.a1
pyrus_communis	pycom09g01430 pycom16g04170
rosa_chinensis	RchiOBHm_Chr2g0163201 RchiOBHm_Chr4g0435771
rosa_laevigata	RLG00000006560 RLG00000021381
rosa_multiflora	Rmu_sc0002045.1_g000037 Rmu_ssc0000471.1_g000001
rosa_roxburghii	Rroxscaffold_2G00087470 Rroxscaffold_5G00376950
rosa_rugosa	Rorug02G0501100 Rorug02G0501200 Rorug04G0289500
rosa_samantha	Rh2AG567700 Rh2BG579800 Rh2CG549700 Rh2DG590100 Rh4AG343800 Rh4BG352500 Rh4CG367000 Rh4DG346400
rosa_wichuraiana	Rw2G047000 Rw4G030020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	927
AccB1I	GGYRCC	2 cut(s)	407, 927
AccI	GTMKAC	2 cut(s)	796, 810
AciI	CCGC	2 cut(s)	429, 535
AclWI	GGATC	1 cut(s)	830
AcsI	RAATTY	2 cut(s)	253, 617
AfaI	GTAC	3 cut(s)	383, 398, 929
AfiI	CCNNNNNNNGG	2 cut(s)	325, 924
AflIII	ACRYGT	2 cut(s)	467, 813
AgsI	TTSAA	3 cut(s)	75, 532, 616
AjiI	CACGTC	1 cut(s)	814
AjnI	CCWGG	1 cut(s)	917
AluBI	AGCT	9 cut(s)	96, 137, 197, 373, 487, 681, 727, 734, 781
AluI	AGCT	9 cut(s)	96, 137, 197, 373, 487, 681, 727, 734, 781
Alw21I	GWGCWC	2 cut(s)	139, 375
AlwI	GGATC	1 cut(s)	830
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	415, 920
ApeKI	GCWGC	3 cut(s)	65, 197, 487
ApoI	RAATTY	2 cut(s)	253, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	276, 308
Asp700I	GAANNNNTTC	2 cut(s)	355, 782
Asp718I	GGTACC	1 cut(s)	927
AspA2I	CCTAGG	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	440, 749, 895
AsuII	TTCGAA	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	374
AvrII	CCTAGG	1 cut(s)	412
BaeGI	GKGCMC	2 cut(s)	114, 412
BanI	GGYRCC	2 cut(s)	407, 927
BanII	GRGCYC	2 cut(s)	139, 375
Bbv12I	GWGCWC	2 cut(s)	139, 375
BbvI	GCAGC	3 cut(s)	52, 184, 474
BccI	CCATC	3 cut(s)	123, 254, 869
BceAI	ACGGC	1 cut(s)	879
BciT130I	CCWGG	1 cut(s)	919
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	2 cut(s)	93, 413
BfmI	CTRYAG	1 cut(s)	793
BisI	GCNGC	3 cut(s)	66, 198, 488
BlnI	CCTAGG	1 cut(s)	412
BlsI	GCNGC	3 cut(s)	67, 199, 489
Bme1390I	CCNGG	2 cut(s)	233, 919
BmeT110I	CYCGRG	1 cut(s)	374
BmgBI	CACGTC	1 cut(s)	814
BmiI	GGNNCC	3 cut(s)	175, 409, 929
BmrFI	CCNGG	2 cut(s)	233, 919
BmrI	ACTGGG	1 cut(s)	109
BmsI	GCATC	3 cut(s)	232, 412, 822
BmuI	ACTGGG	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	852
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	232, 324, 412, 923
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 924
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	3 cut(s)	69, 115, 931
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	919
BseDI	CCNNGG	4 cut(s)	232, 324, 412, 923
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	2 cut(s)	325, 924
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	3 cut(s)	288, 321, 575
BseNI	ACTGG	3 cut(s)	69, 115, 931
BseSI	GKGCMC	2 cut(s)	114, 412
BseXI	GCAGC	3 cut(s)	52, 184, 474
BshFI	GGCC	2 cut(s)	417, 922
BshNI	GGYRCC	2 cut(s)	407, 927
BsiHKAI	GWGCWC	2 cut(s)	139, 375
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	232, 426
BslFI	GGGAC	3 cut(s)	50, 301, 874
BslI	CCNNNNNNNGG	2 cut(s)	325, 924
BsmFI	GGGAC	3 cut(s)	50, 301, 874
BsnI	GGCC	2 cut(s)	417, 922
BsoBI	CYCGRG	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	349
Bsp1286I	GDGCHC	4 cut(s)	114, 139, 375, 412
Bsp1407I	TGTACA	2 cut(s)	381, 396
Bsp143I	GATC	2 cut(s)	758, 822
BspACI	CCGC	2 cut(s)	429, 535
BspANI	GGCC	2 cut(s)	417, 922
BspCNI	CTCAG	3 cut(s)	289, 322, 576
BspLI	GGNNCC	3 cut(s)	175, 409, 929
BspPI	GGATC	1 cut(s)	830
BspT104I	TTCGAA	1 cut(s)	349
BspT107I	GGYRCC	2 cut(s)	407, 927
BsrDI	GCAATG	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	425
BsrGI	TGTACA	2 cut(s)	381, 396
BsrI	ACTGG	3 cut(s)	69, 115, 931
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	4 cut(s)	232, 324, 412, 923
BssMI	GATC	2 cut(s)	758, 822
BssT1I	CCWWGG	2 cut(s)	324, 412
Bst2UI	CCWGG	1 cut(s)	919
Bst4CI	ACNGT	2 cut(s)	49, 794
Bst6I	CTCTTC	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstAUI	TGTACA	2 cut(s)	381, 396
BstBI	TTCGAA	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	3 cut(s)	297, 330, 584
BstF5I	GGATG	1 cut(s)	631
BstKTI	GATC	2 cut(s)	761, 825
BstMBI	GATC	2 cut(s)	758, 822
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	919
BstNSI	RCATGY	3 cut(s)	346, 471, 560
BstSCI	CCNGG	2 cut(s)	231, 917
BstSFI	CTRYAG	1 cut(s)	793
BstSLI	GKGCMC	2 cut(s)	114, 412
BstV1I	GCAGC	3 cut(s)	52, 184, 474
BstXI	CCANNNNNNTGG	1 cut(s)	122
BsuRI	GGCC	2 cut(s)	417, 922
BtgZI	GCGATG	1 cut(s)	531
BtrI	CACGTC	1 cut(s)	814
BtsCI	GGATG	1 cut(s)	631
BtsIMutI	CAGTG	2 cut(s)	54, 294
Cac8I	GCNNGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	425
Csp6I	GTAC	3 cut(s)	382, 397, 928
CviAII	CATG	5 cut(s)	343, 468, 538, 557, 836
CviQI	GTAC	3 cut(s)	382, 397, 928
DdeI	CTNAG	3 cut(s)	297, 330, 584
DpnI	GATC	2 cut(s)	760, 824
DpnII	GATC	2 cut(s)	758, 822
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	444
Ecl136II	GAGCTC	2 cut(s)	137, 373
Eco130I	CCWWGG	2 cut(s)	324, 412
Eco147I	AGGCCT	1 cut(s)	417
Eco24I	GRGCYC	2 cut(s)	139, 375
Eco53kI	GAGCTC	2 cut(s)	137, 373
Eco88I	CYCGRG	1 cut(s)	374
EcoICRI	GAGCTC	2 cut(s)	137, 373
EcoRII	CCWGG	1 cut(s)	917
EcoT14I	CCWWGG	2 cut(s)	324, 412
EcoT22I	ATGCAT	1 cut(s)	837
EcoT38I	GRGCYC	2 cut(s)	139, 375
ErhI	CCWWGG	2 cut(s)	324, 412
FaeI	CATG	5 cut(s)	346, 471, 541, 560, 839
FaqI	GGGAC	3 cut(s)	50, 301, 874
FatI	CATG	5 cut(s)	342, 467, 537, 556, 835
FblI	GTMKAC	2 cut(s)	796, 810
Fnu4HI	GCNGC	3 cut(s)	66, 198, 488
FokI	GGATG	1 cut(s)	638
FriOI	GRGCYC	2 cut(s)	139, 375
Fsp4HI	GCNGC	3 cut(s)	66, 198, 488
FspBI	CTAG	2 cut(s)	93, 413
GluI	GCNGC	3 cut(s)	66, 198, 488
HaeIII	GGCC	2 cut(s)	417, 922
HapII	CCGG	2 cut(s)	232, 426
Hin1II	CATG	5 cut(s)	346, 471, 541, 560, 839
HincII	GTYRAC	3 cut(s)	340, 811, 901
HindII	GTYRAC	3 cut(s)	340, 811, 901
HinfI	GANTC	3 cut(s)	154, 314, 703
HpaI	GTTAAC	1 cut(s)	901
HpaII	CCGG	2 cut(s)	232, 426
HphI	GGTGA	3 cut(s)	440, 749, 895
Hpy166II	GTNNAC	4 cut(s)	340, 797, 811, 901
Hpy188I	TCNGA	4 cut(s)	264, 585, 678, 896
Hpy188III	TCNNGA	4 cut(s)	239, 376, 496, 869
Hpy8I	GTNNAC	4 cut(s)	340, 797, 811, 901
Hpy99I	CGWCG	2 cut(s)	812, 815
HpyAV	CCTTC	4 cut(s)	96, 187, 709, 921
HpyCH4III	ACNGT	2 cut(s)	49, 794
HpyCH4IV	ACGT	3 cut(s)	286, 807, 813
HpyCH4V	TGCA	1 cut(s)	835
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	3 cut(s)	297, 330, 584
HpySE526I	ACGT	3 cut(s)	286, 807, 813
Hsp92II	CATG	5 cut(s)	346, 471, 541, 560, 839
KpnI	GGTACC	1 cut(s)	931
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
KspAI	GTTAAC	1 cut(s)	901
Kzo9I	GATC	2 cut(s)	758, 822
LmnI	GCTCC	3 cut(s)	56, 134, 484
Lsp1109I	GCAGC	3 cut(s)	52, 184, 474
LweI	GCATC	3 cut(s)	232, 412, 822
MaeI	CTAG	2 cut(s)	93, 413
MaeII	ACGT	3 cut(s)	286, 807, 813
MaeIII	GTNAC	2 cut(s)	292, 446
MalI	GATC	2 cut(s)	760, 824
MboI	GATC	2 cut(s)	758, 822
MboII	GAAGA	5 cut(s)	81, 163, 200, 203, 733
MhlI	GDGCHC	4 cut(s)	114, 139, 375, 412
MluCI	AATT	2 cut(s)	253, 617
MlyI	GAGTC	2 cut(s)	163, 323
MnlI	CCTC	7 cut(s)	292, 474, 616, 639, 741, 763, 933
Mph1103I	ATGCAT	1 cut(s)	837
MroNI	GCCGGC	1 cut(s)	425
MroXI	GAANNNNTTC	2 cut(s)	355, 782
MseI	TTAA	2 cut(s)	458, 900
MslI	CAYNNNNRTG	2 cut(s)	360, 585
MspI	CCGG	2 cut(s)	232, 426
MspR9I	CCNGG	2 cut(s)	233, 919
MvaI	CCWGG	1 cut(s)	919
MwoI	GCNNNNNNNGC	1 cut(s)	65
NaeI	GCCGGC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	758, 822
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	5 cut(s)	346, 471, 541, 560, 839
NlaIV	GGNNCC	3 cut(s)	175, 409, 929
NmeAIII	GCCGAG	1 cut(s)	586
NmuCI	GTSAC	2 cut(s)	292, 446
NsiI	ATGCAT	1 cut(s)	837
NspI	RCATGY	3 cut(s)	346, 471, 560
NspV	TTCGAA	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	374
PceI	AGGCCT	1 cut(s)	417
PciI	ACATGT	1 cut(s)	467
PdiI	GCCGGC	1 cut(s)	427
PdmI	GAANNNNTTC	2 cut(s)	355, 782
PfeI	GAWTC	1 cut(s)	703
PkrI	GCNGC	3 cut(s)	67, 199, 489
PleI	GAGTC	2 cut(s)	162, 322
PpsI	GAGTC	2 cut(s)	162, 322
PscI	ACATGT	1 cut(s)	467
Psp124BI	GAGCTC	2 cut(s)	139, 375
Psp6I	CCWGG	1 cut(s)	917
PspGI	CCWGG	1 cut(s)	917
PspN4I	GGNNCC	3 cut(s)	175, 409, 929
RsaI	GTAC	3 cut(s)	383, 398, 929
RsaNI	GTAC	3 cut(s)	382, 397, 928
RseI	CAYNNNNRTG	2 cut(s)	360, 585
SacI	GAGCTC	2 cut(s)	139, 375
SalI	GTCGAC	1 cut(s)	809
SaqAI	TTAA	2 cut(s)	458, 900
SatI	GCNGC	3 cut(s)	66, 198, 488
Sau3AI	GATC	2 cut(s)	758, 822
SchI	GAGTC	2 cut(s)	163, 323
ScrFI	CCNGG	2 cut(s)	233, 919
SduI	GDGCHC	4 cut(s)	114, 139, 375, 412
SfaNI	GCATC	3 cut(s)	232, 412, 822
SfcI	CTRYAG	1 cut(s)	793
Sfr274I	CTCGAG	1 cut(s)	374
SfuI	TTCGAA	1 cut(s)	349
SgrDI	CGTCGACG	1 cut(s)	809
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	2 cut(s)	360, 585
SmlI	CTYRAG	2 cut(s)	374, 867
SmoI	CTYRAG	2 cut(s)	374, 867
Sse9I	AATT	2 cut(s)	253, 617
SseBI	AGGCCT	1 cut(s)	417
SsiI	CCGC	2 cut(s)	429, 535
SspMI	CTAG	2 cut(s)	93, 413
SstI	GAGCTC	2 cut(s)	139, 375
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	231, 917
StyI	CCWWGG	2 cut(s)	324, 412
TaaI	ACNGT	2 cut(s)	49, 794
TaiI	ACGT	3 cut(s)	289, 810, 816
TaqI	TCGA	5 cut(s)	180, 349, 375, 495, 810
TasI	AATT	2 cut(s)	253, 617
TatI	WGTACW	2 cut(s)	381, 396
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	2 cut(s)	458, 900
Tru9I	TTAA	2 cut(s)	458, 900
TscAI	CASTG	2 cut(s)	54, 301
TseFI	GTSAC	2 cut(s)	292, 446
TseI	GCWGC	3 cut(s)	65, 197, 487
Tsp45I	GTSAC	2 cut(s)	292, 446
TspDTI	ATGAA	4 cut(s)	201, 455, 569, 775
TspRI	CASTG	2 cut(s)	54, 301
XapI	RAATTY	2 cut(s)	253, 617
XceI	RCATGY	3 cut(s)	346, 471, 560
XhoI	CTCGAG	1 cut(s)	374
XmaJI	CCTAGG	1 cut(s)	412
XmiI	GTMKAC	2 cut(s)	796, 810
XmnI	GAANNNNTTC	2 cut(s)	355, 782
XspI	CTAG	2 cut(s)	93, 413
Zsp2I	ATGCAT	1 cut(s)	837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.