Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Forward (+)

28335502 .. 28336990

Gene Structure 1489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTCATCCATAGAGCCAAAAGTAATGATGGTTGGTGCTAATAAGAAACAACGAACCGTCCAAGCTAGTTCGAGGAAAGGTTGTATGAGAGGAAAAGGTGGACCCGATAACGCGTCTTGCACTTACAAAGGTGTTAGACAACGCACTTGGGGCAAATGGGTCGCTGAGATCCGCGAGCCTAACCGAGGAGCTCGTCTTTGGCTCGGTACCTTCGACACCTCCCGTGAAGCTGCCTTGGCTTATGACTCCGCAGCTCGTAAGCTCTATGGGCCTGAGGCTCATCTCAACCTCCCTGAGTCCTTAAGAAGTTACCCTAAAACGGCGTCGTCTCCGGCGTCCCAGACTACACCAAGCAGCAACACCGGTGGAAAAAGCAGCAGCGACTCTGAGTCGCCGTGTTCATCCAACGAGATGTCATCATGTGGAAGAGTGACAGAGGAGATATCATGGGAGCATATAAACGTGGATTTGCCGGTAATGGATGATTCTTCAATATGGGAAGAAGCTACAATGTCGTTAGGATTTCCATGGGTTCATGAAGGAGATAATGATATTTCTCGGTTTGATACTTGTATTTCCGGTGGCTATTCTAATTGGGATTCCTTTCATTCCCCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

206

Amino Acids

22.58

Weight (kDa)

6.1

Isoelectric Point (pI)

65.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	42 - 90	2.1e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	206
AccII	CGCG	2 cut(s)	113, 174
AciI	CCGC	2 cut(s)	172, 249
AclWI	GGATC	1 cut(s)	163
AcyI	GRCGYC	2 cut(s)	323, 335
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	185, 319
AflII	CTTAAG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	111
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	492
AhdI	GACNNNNNGTC	1 cut(s)	388
AluBI	AGCT	6 cut(s)	65, 191, 230, 254, 262, 506
AluI	AGCT	6 cut(s)	65, 191, 230, 254, 262, 506
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	5 cut(s)	230, 251, 354, 375, 378
AsiGI	ACCGGT	1 cut(s)	362
Asp718I	GGTACC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	101, 269
AvaII	GGWCC	1 cut(s)	101
AxyI	CCTNAGG	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	5 cut(s)	217, 263, 366, 387, 390
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	2 cut(s)	336, 379
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	301
BisI	GCNGC	5 cut(s)	231, 252, 355, 376, 379
BlsI	GCNGC	5 cut(s)	232, 253, 356, 377, 380
Bme18I	GGWCC	1 cut(s)	101
BmeRI	GACNNNNNGTC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	101, 269
BmiI	GGNNCC	2 cut(s)	103, 208
BsaHI	GRCGYC	2 cut(s)	323, 335
BsaJI	CCNNGG	3 cut(s)	184, 234, 527
BsaWI	WCCGGW	2 cut(s)	362, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 319
Bse118I	RCCGGY	2 cut(s)	362, 472
Bse21I	CCTNAGG	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	184, 234, 527
BseGI	GGATG	3 cut(s)	5, 401, 487
BseLI	CCNNNNNNNGG	2 cut(s)	185, 319
BseMII	CTCAG	4 cut(s)	156, 264, 285, 378
BseRI	GAGGAG	2 cut(s)	201, 452
BseXI	GCAGC	5 cut(s)	217, 263, 366, 387, 390
Bsh1236I	CGCG	2 cut(s)	113, 174
BshFI	GGCC	1 cut(s)	271
BshNI	GGYRCC	1 cut(s)	206
BshTI	ACCGGT	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	4 cut(s)	332, 363, 473, 579
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	185, 319
BsmAI	GTCTC	1 cut(s)	333
BsmBI	CGTCTC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	527
BspACI	CCGC	2 cut(s)	172, 249
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	4 cut(s)	157, 265, 286, 379
BspFNI	CGCG	2 cut(s)	113, 174
BspHI	TCATGA	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	103, 208
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	206
BspTI	CTTAAG	1 cut(s)	301
BsrFI	RCCGGY	2 cut(s)	362, 472
BssAI	RCCGGY	2 cut(s)	362, 472
BssECI	CCNNGG	3 cut(s)	184, 234, 527
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	2 cut(s)	323, 335
BssT1I	CCWWGG	2 cut(s)	234, 527
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	421
BstACI	GRCGYC	2 cut(s)	323, 335
BstAFI	CTTAAG	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	4 cut(s)	165, 273, 294, 387
BstDSI	CCRYGG	1 cut(s)	527
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	3 cut(s)	5, 401, 487
BstFNI	CGCG	2 cut(s)	113, 174
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 236, 268
BstUI	CGCG	2 cut(s)	113, 174
BstV1I	GCAGC	5 cut(s)	217, 263, 366, 387, 390
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	527
BtsCI	GGATG	3 cut(s)	5, 401, 487
Cac8I	GCNNGC	1 cut(s)	176
CciI	TCATGA	1 cut(s)	535
Cfr10I	RCCGGY	2 cut(s)	362, 472
Cfr13I	GGNCC	2 cut(s)	101, 269
CseI	GACGC	3 cut(s)	102, 312, 324
Csp6I	GTAC	1 cut(s)	207
CspAI	ACCGGT	1 cut(s)	362
CspCI	CAANNNNNGTGG	2 cut(s)	346, 381
CviAII	CATG	4 cut(s)	420, 447, 528, 536
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	4 cut(s)	165, 273, 294, 387
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
DriI	GACNNNNNGTC	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	421
Eam1105I	GACNNNNNGTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	421
Ecl136II	GAGCTC	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	234, 527
Eco24I	GRGCYC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	191
Eco81I	CCTNAGG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	234, 527
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	234, 527
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	4 cut(s)	423, 450, 531, 539
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	4 cut(s)	419, 446, 527, 535
Fnu4HI	GCNGC	5 cut(s)	231, 252, 355, 376, 379
FokI	GGATG	2 cut(s)	388, 494
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	5 cut(s)	231, 252, 355, 376, 379
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	5 cut(s)	231, 252, 355, 376, 379
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	4 cut(s)	332, 363, 473, 579
HgaI	GACGC	3 cut(s)	102, 312, 324
Hin1I	GRCGYC	2 cut(s)	323, 335
Hin1II	CATG	4 cut(s)	423, 450, 531, 539
HinfI	GANTC	6 cut(s)	245, 296, 383, 389, 485, 599
HpaII	CCGG	4 cut(s)	332, 363, 473, 579
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	1 cut(s)	328
HpyAV	CCTTC	2 cut(s)	220, 533
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 236, 268
HpyF3I	CTNAG	4 cut(s)	165, 273, 294, 387
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	2 cut(s)	323, 335
Hsp92II	CATG	4 cut(s)	423, 450, 531, 539
KpnI	GGTACC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	188, 451
LpnPI	CCDG	7 cut(s)	285, 306, 345, 353, 376, 486, 592
Lsp1109I	GCAGC	5 cut(s)	217, 263, 366, 387, 390
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	308, 430
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	3 cut(s)	438, 480, 512
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	592
MluI	ACGCGT	1 cut(s)	111
MlyI	GAGTC	4 cut(s)	239, 305, 377, 398
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	7 cut(s)	66, 83, 179, 229, 268, 299, 430
MseI	TTAA	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	301
MspI	CCGG	4 cut(s)	332, 363, 473, 579
MvnI	CGCG	2 cut(s)	113, 174
MwoI	GCNNNNNNNGC	3 cut(s)	150, 236, 268
NcoI	CCATGG	1 cut(s)	527
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	4 cut(s)	423, 450, 531, 539
NlaIV	GGNNCC	2 cut(s)	103, 208
NmuCI	GTSAC	1 cut(s)	430
PagI	TCATGA	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 332
PfeI	GAWTC	2 cut(s)	485, 599
PinAI	ACCGGT	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	232, 253, 356, 377, 380
PleI	GAGTC	4 cut(s)	239, 304, 377, 397
PpsI	GAGTC	4 cut(s)	239, 304, 377, 397
Psp124BI	GAGCTC	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	103, 208
PspPI	GGNCC	2 cut(s)	101, 269
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SacI	GAGCTC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	5 cut(s)	231, 252, 355, 376, 379
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	101, 269
SchI	GAGTC	4 cut(s)	239, 305, 377, 398
SduI	GDGCHC	1 cut(s)	193
SgrAI	CRCCGGYG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	1 cut(s)	592
SsiI	CCGC	2 cut(s)	172, 249
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	193
StyI	CCWWGG	2 cut(s)	234, 527
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	2 cut(s)	71, 213
TasI	AATT	1 cut(s)	592
TfiI	GAWTC	2 cut(s)	485, 599
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	5 cut(s)	230, 251, 354, 375, 378
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	4 cut(s)	390, 524, 552, 596
Vha464I	CTTAAG	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	183
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.