Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

967850 .. 968536

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCGACGTCGGAGATGATTGGTGGTAGTAGCAGTGTTGGGGTTGCGGAGAAGCCGGCGAAGCGGCCAGCGCAGGGAAGCTCAAGGAAGGGTTGCATGAAGGGGAAAGGGGGGCCGGAGAACGCTATGTGCACTTACAAGGGCGTCAGGCAAAGGACGTGGGGGAAATGGGTGGCTGAAATCCGCGAGCCCAACCGCGGGGCCCGGCTCTGGCTCGGGACTTTCGCCACCTCCTATGAGGCTGCTCTGGCTTATGATGCCGCCGCCAGGAAGCTCTACGGTTCCAAGGCGAAGCTCAATTTGCCAGATCAGCAAGCCCCTAACCATCGCCATCGTCAACTGAATCAGCACCTGCAGCATCAAGTATTTCCCTCGTCGGCCAATCCCGGCGTGCCACCTCAAATTCCGAACCAAACCCTTGTGCAGAACAATCCATCAGTGGATCGGCCCCGCGGAAATTATAATTCTGGCCGCGCTGAGACCCCGCAGGAGAATGGATGGGATATTCTGGGGGAACATGAGCGAGAGCTTTCCTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

181

Amino Acids

19.76

Weight (kDa)

9.75

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	46 - 94	2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AarI	CACCTGC	1 cut(s)	360
AatII	GACGTC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	4 cut(s)	186, 198, 453, 474
AclWI	GGATC	1 cut(s)	450
AcoI	YGGCCR	3 cut(s)	65, 378, 469
AcsI	RAATTY	1 cut(s)	402
AcyI	GRCGYC	2 cut(s)	8, 144
AfiI	CCNNNNNNNGG	5 cut(s)	74, 197, 198, 210, 267
AjiI	CACGTC	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	4 cut(s)	81, 274, 295, 529
AluI	AGCT	4 cut(s)	81, 274, 295, 529
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	473
Alw44I	GTGCAC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	450
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	6 cut(s)	65, 113, 201, 378, 446, 469
ApaI	GGGCCC	1 cut(s)	205
ApaLI	GTGCAC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	242, 355
ApoI	RAATTY	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	73, 476
AspS9I	GGNCC	4 cut(s)	113, 201, 202, 447
AsuC2I	CCSGG	2 cut(s)	205, 387
AvaI	CYCGRG	1 cut(s)	215
BaeGI	GKGCMC	2 cut(s)	134, 205
BanII	GRGCYC	2 cut(s)	192, 205
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	229, 367
BccI	CCATC	4 cut(s)	333, 339, 442, 492
BciT130I	CCWGG	1 cut(s)	268
BcnI	CCSGG	2 cut(s)	205, 387
BcoDI	GTCTC	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	360
BisI	GCNGC	6 cut(s)	65, 243, 261, 264, 356, 472
BlsI	GCNGC	6 cut(s)	66, 244, 262, 265, 357, 473
Bme1390I	CCNGG	3 cut(s)	205, 268, 387
BmeT110I	CYCGRG	1 cut(s)	215
BmgBI	CACGTC	1 cut(s)	159
BmgT120I	GGNCC	4 cut(s)	113, 201, 202, 447
BmiI	GGNNCC	5 cut(s)	114, 202, 203, 283, 449
BmrFI	CCNGG	3 cut(s)	205, 268, 387
BmsI	GCATC	2 cut(s)	247, 367
BpuEI	CTTGAG	1 cut(s)	67
BpuMI	CCSGG	2 cut(s)	205, 387
BsaHI	GRCGYC	2 cut(s)	8, 144
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	196, 285, 451
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 197, 198, 210, 267
Bse118I	RCCGGY	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	196, 285, 451
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	5 cut(s)	74, 197, 198, 210, 267
BseMII	CTCAG	1 cut(s)	468
BseSI	GKGCMC	2 cut(s)	134, 205
BseXI	GCAGC	2 cut(s)	229, 367
BsgI	GTGCAG	1 cut(s)	443
Bsh1236I	CGCG	4 cut(s)	186, 198, 453, 474
BshFI	GGCC	6 cut(s)	67, 115, 203, 380, 448, 471
BsiHKAI	GWGCWC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	4 cut(s)	56, 116, 205, 387
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	5 cut(s)	74, 197, 198, 210, 267
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	6 cut(s)	67, 115, 203, 380, 448, 471
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	215
Bsp120I	GGGCCC	1 cut(s)	201
Bsp1286I	GDGCHC	3 cut(s)	134, 192, 205
Bsp143I	GATC	2 cut(s)	307, 442
BspANI	GGCC	6 cut(s)	67, 115, 203, 380, 448, 471
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	4 cut(s)	186, 198, 453, 474
BspLI	GGNNCC	5 cut(s)	114, 202, 203, 283, 449
BspMAI	CTGCAG	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	450
BspTNI	GGTCTC	1 cut(s)	473
BsrFI	RCCGGY	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	196, 285, 451
BssMI	GATC	2 cut(s)	307, 442
BssNI	GRCGYC	2 cut(s)	8, 144
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	281
BstACI	GRCGYC	2 cut(s)	8, 144
BstC8I	GCNNGC	5 cut(s)	57, 69, 188, 315, 392
BstDEI	CTNAG	1 cut(s)	477
BstDSI	CCRYGG	2 cut(s)	196, 451
BstF5I	GGATG	1 cut(s)	503
BstFNI	CGCG	4 cut(s)	186, 198, 453, 474
BstHHI	GCGC	2 cut(s)	73, 476
BstKTI	GATC	2 cut(s)	310, 445
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	307, 442
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 70, 248, 257, 301, 310, 355
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	3 cut(s)	203, 266, 385
BstSFI	CTRYAG	1 cut(s)	353
BstSLI	GKGCMC	2 cut(s)	134, 205
BstUI	CGCG	4 cut(s)	186, 198, 453, 474
BstV1I	GCAGC	2 cut(s)	229, 367
BsuRI	GGCC	6 cut(s)	67, 115, 203, 380, 448, 471
BtgI	CCRYGG	2 cut(s)	196, 451
BtgZI	GCGATG	1 cut(s)	311
BtrI	CACGTC	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	503
BtsI	GCAGTG	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	40, 444
BveI	ACCTGC	1 cut(s)	360
Cac8I	GCNNGC	5 cut(s)	57, 69, 188, 315, 392
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	2 cut(s)	73, 476
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	4 cut(s)	113, 201, 202, 447
Cfr42I	CCGCGG	2 cut(s)	199, 454
CseI	GACGC	1 cut(s)	133
CspCI	CAANNNNNGTGG	2 cut(s)	140, 175
CviAII	CATG	2 cut(s)	97, 518
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	2 cut(s)	309, 444
DpnII	GATC	2 cut(s)	307, 442
EaeI	YGGCCR	3 cut(s)	65, 378, 469
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	2 cut(s)	192, 205
Eco31I	GGTCTC	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	2 cut(s)	192, 205
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	2 cut(s)	100, 521
FaiI	YATR	6 cut(s)	98, 128, 237, 255, 462, 519
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	96, 517
FauI	CCCGC	3 cut(s)	191, 458, 492
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	65, 243, 261, 264, 356, 472
FokI	GGATG	1 cut(s)	510
FriOI	GRGCYC	2 cut(s)	192, 205
Fsp4HI	GCNGC	6 cut(s)	65, 243, 261, 264, 356, 472
GlaI	GCGC	2 cut(s)	72, 475
GluI	GCNGC	6 cut(s)	65, 243, 261, 264, 356, 472
HaeIII	GGCC	6 cut(s)	67, 115, 203, 380, 448, 471
HapII	CCGG	4 cut(s)	56, 116, 205, 387
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	73, 476
Hin1I	GRCGYC	2 cut(s)	8, 144
Hin1II	CATG	2 cut(s)	100, 521
Hin6I	GCGC	2 cut(s)	71, 474
HinP1I	GCGC	2 cut(s)	71, 474
HincII	GTYRAC	2 cut(s)	6, 338
HindII	GTYRAC	2 cut(s)	6, 338
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	4 cut(s)	56, 116, 205, 387
Hpy166II	GTNNAC	3 cut(s)	6, 132, 338
Hpy188I	TCNGA	2 cut(s)	13, 408
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	3 cut(s)	6, 132, 338
Hpy99I	CGWCG	3 cut(s)	10, 13, 379
HpyAV	CCTTC	2 cut(s)	82, 94
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4IV	ACGT	2 cut(s)	8, 158
HpyCH4V	TGCA	4 cut(s)	96, 132, 355, 424
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 70, 248, 257, 301, 310, 355
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	2 cut(s)	8, 158
Hsp92I	GRCGYC	2 cut(s)	8, 144
Hsp92II	CATG	2 cut(s)	100, 521
HspAI	GCGC	2 cut(s)	71, 474
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
KspI	CCGCGG	2 cut(s)	199, 454
Kzo9I	GATC	2 cut(s)	307, 442
Lsp1109I	GCAGC	2 cut(s)	229, 367
LweI	GCATC	2 cut(s)	247, 367
MaeII	ACGT	2 cut(s)	8, 158
MalI	GATC	2 cut(s)	309, 444
MboI	GATC	2 cut(s)	307, 442
MhlI	GDGCHC	3 cut(s)	134, 192, 205
MluCI	AATT	4 cut(s)	298, 402, 457, 463
MnlI	CCTC	4 cut(s)	232, 241, 382, 408
MroNI	GCCGGC	1 cut(s)	55
MspA1I	CMGCKG	2 cut(s)	198, 453
MspI	CCGG	4 cut(s)	56, 116, 205, 387
MspR9I	CCNGG	3 cut(s)	205, 268, 387
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	4 cut(s)	186, 198, 453, 474
MwoI	GCNNNNNNNGC	7 cut(s)	61, 70, 248, 257, 301, 310, 355
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	205, 387
NdeII	GATC	2 cut(s)	307, 442
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	100, 521
NlaIV	GGNNCC	5 cut(s)	114, 202, 203, 283, 449
PaqCI	CACCTGC	1 cut(s)	360
PdiI	GCCGGC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	6 cut(s)	66, 244, 262, 265, 357, 473
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	5 cut(s)	114, 202, 203, 283, 449
PspOMI	GGGCCC	1 cut(s)	201
PspPI	GGNCC	4 cut(s)	113, 201, 202, 447
PstI	CTGCAG	1 cut(s)	357
PstNI	CAGNNNCTG	1 cut(s)	352
SacII	CCGCGG	2 cut(s)	199, 454
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	6 cut(s)	65, 243, 261, 264, 356, 472
Sau3AI	GATC	2 cut(s)	307, 442
Sau96I	GGNCC	4 cut(s)	113, 201, 202, 447
ScrFI	CCNGG	3 cut(s)	205, 268, 387
SduI	GDGCHC	3 cut(s)	134, 192, 205
SetI	ASST	9 cut(s)	11, 83, 161, 233, 276, 297, 354, 400, 531
SfaNI	GCATC	2 cut(s)	247, 367
SfcI	CTRYAG	1 cut(s)	353
Sfr303I	CCGCGG	2 cut(s)	199, 454
SgrBI	CCGCGG	2 cut(s)	199, 454
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	4 cut(s)	298, 402, 457, 463
StyD4I	CCNGG	3 cut(s)	203, 266, 385
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	281
TaiI	ACGT	2 cut(s)	11, 161
TaqI	TCGA	1 cut(s)	5
TasI	AATT	4 cut(s)	298, 402, 457, 463
TauI	GCSGC	4 cut(s)	67, 263, 266, 474
TfiI	GAWTC	1 cut(s)	343
TscAI	CASTG	2 cut(s)	40, 444
TseI	GCWGC	2 cut(s)	242, 355
TspDTI	ATGAA	1 cut(s)	113
TspRI	CASTG	2 cut(s)	40, 444
VneI	GTGCAC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	5
ZraI	GACGTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.