Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

1191303 .. 1192151

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1020500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCGACGATGGAGATGAGTGGTGGTAATAGCAGTGCTGGGGTTGCGGAGATGAGTGGTGGTAGTAGCAGTGTTGGGGTTGCGGAGAAGAAGCTGGCGAAGCGGCCAGCGCAGGGAAGCTCGAGGAAGGGTTGCATGAGGGGGAAAGGAGGGCCGGAGAACGCTATGTGCACTTACAAGGGCGTCAGGCAAAGGACGTGGGGGAAATGGGTGGCTGAAATCCGCGAGCCCAACCGCGGGGCCCGGCTCTGGCTCGGAACTTTCGACACCTCCTATGAGGCTGCTCTGGCTTATGATGCCGCCGCCAGGAAGCTCTACGGTTCCGAAGCGAAGCTCAATTTGCCAGATCAGCAAGCCCCTAACTATCACCATTATCAACTGAATCAGCACCTGCAGCATCAAGTATTTCCCTCGTCGGCCAATGCCGGCGTGCCACCTCAAATTCCTAACCAAACCCTTGTGCAGAACAATCCATCAGGTACTGGGACTAATCCTGCATGTTATGCTCCTCCTGTGAAAGATATTGCAGTACCTGTTGTTCACAATAATTTTCCGAATGTGAAAGTGGATCAGCCCCTCGGAAATTATAATTCTGGCGGGGCTGAGATCCTGCCGGAGCAGGGCGGCATGAAAGTGGAAAATAATATGAGTAGTGGTGTGACCAATGAAGGAATGGATGGGATATTTTGGGGGAACATGAGCGAGAGCTTTCCGGTGTTTGATGACTCAATATGGACGGAGGCAGCCATGTCGCTTGATCTTCCAGGGGTGGCTGATCAAGGCATTTTCGGCTGCGGCTTCATGGATGGAAATTTCTGGGAACATCGCATTCGTCTCAATGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

283

Amino Acids

30.28

Weight (kDa)

6.08

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	59 - 107	6.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	588
AarI	CACCTGC	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	399
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	225, 237
AclWI	GGATC	2 cut(s)	576, 601
AcoI	YGGCCR	2 cut(s)	104, 417
AcsI	RAATTY	2 cut(s)	441, 811
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	481, 531
AfiI	CCNNNNNNNGG	6 cut(s)	113, 236, 237, 249, 306, 620
AjiI	CACGTC	1 cut(s)	198
AjnI	CCWGG	2 cut(s)	305, 763
AluBI	AGCT	5 cut(s)	94, 120, 313, 334, 708
AluI	AGCT	5 cut(s)	94, 120, 313, 334, 708
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	839
Alw44I	GTGCAC	1 cut(s)	169
AlwI	GGATC	2 cut(s)	576, 601
AlwNI	CAGNNNCTG	3 cut(s)	391, 482, 533
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	4 cut(s)	104, 152, 240, 417
ApaI	GGGCCC	1 cut(s)	244
ApaLI	GTGCAC	1 cut(s)	169
ApeKI	GCWGC	4 cut(s)	281, 394, 743, 792
ApoI	RAATTY	2 cut(s)	441, 811
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	3 cut(s)	152, 240, 241
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	121
BaeGI	GKGCMC	2 cut(s)	173, 244
BanII	GRGCYC	2 cut(s)	231, 244
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	4 cut(s)	268, 406, 755, 779
BccI	CCATC	4 cut(s)	4, 481, 671, 800
BcgI	CGANNNNNNTGC	2 cut(s)	732, 766
BciT130I	CCWGG	2 cut(s)	307, 765
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	839
BfmI	CTRYAG	1 cut(s)	392
BfuAI	ACCTGC	1 cut(s)	399
BisI	GCNGC	9 cut(s)	104, 282, 300, 303, 395, 625, 744, 793, 796
BlsI	GCNGC	9 cut(s)	105, 283, 301, 304, 396, 626, 745, 794, 797
Bme1390I	CCNGG	3 cut(s)	244, 307, 765
BmeT110I	CYCGRG	1 cut(s)	121
BmgBI	CACGTC	1 cut(s)	198
BmgT120I	GGNCC	3 cut(s)	152, 240, 241
BmiI	GGNNCC	3 cut(s)	241, 242, 322
BmrFI	CCNGG	3 cut(s)	244, 307, 765
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	286, 406
BmuI	ACTGGG	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	235, 577, 764
BsaWI	WCCGGW	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	6 cut(s)	113, 236, 237, 249, 306, 620
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	487
BseBI	CCWGG	2 cut(s)	307, 765
BseDI	CCNNGG	3 cut(s)	235, 577, 764
BseGI	GGATG	2 cut(s)	682, 811
BseLI	CCNNNNNNNGG	6 cut(s)	113, 236, 237, 249, 306, 620
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	1 cut(s)	498
BseSI	GKGCMC	2 cut(s)	173, 244
BseXI	GCAGC	4 cut(s)	268, 406, 755, 779
BseYI	CCCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	482
Bsh1236I	CGCG	2 cut(s)	225, 237
BshFI	GGCC	4 cut(s)	106, 154, 242, 419
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	5 cut(s)	155, 244, 426, 614, 713
BslFI	GGGAC	1 cut(s)	499
BslI	CCNNNNNNNGG	6 cut(s)	113, 236, 237, 249, 306, 620
BsmAI	GTCTC	1 cut(s)	839
BsmBI	CGTCTC	1 cut(s)	839
BsmFI	GGGAC	1 cut(s)	499
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	4 cut(s)	106, 154, 242, 419
BsoBI	CYCGRG	1 cut(s)	121
Bsp120I	GGGCCC	1 cut(s)	240
Bsp1286I	GDGCHC	3 cut(s)	173, 231, 244
Bsp143I	GATC	5 cut(s)	346, 568, 606, 757, 775
BspANI	GGCC	4 cut(s)	106, 154, 242, 419
BspCNI	CTCAG	1 cut(s)	595
BspFNI	CGCG	2 cut(s)	225, 237
BspLI	GGNNCC	3 cut(s)	241, 242, 322
BspMAI	CTGCAG	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	2 cut(s)	576, 601
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	235, 577, 764
BssMI	GATC	5 cut(s)	346, 568, 606, 757, 775
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	307, 765
Bst4CI	ACNGT	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	6 cut(s)	96, 108, 227, 354, 427, 431
BstDEI	CTNAG	1 cut(s)	603
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	682, 811
BstFNI	CGCG	2 cut(s)	225, 237
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	5 cut(s)	349, 571, 609, 760, 778
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	5 cut(s)	346, 568, 606, 757, 775
BstNI	CCWGG	2 cut(s)	307, 765
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	3 cut(s)	242, 305, 763
BstSFI	CTRYAG	1 cut(s)	392
BstSLI	GKGCMC	2 cut(s)	173, 244
BstUI	CGCG	2 cut(s)	225, 237
BstV1I	GCAGC	4 cut(s)	268, 406, 755, 779
BstX2I	RGATCY	1 cut(s)	606
BstYI	RGATCY	1 cut(s)	606
BsuRI	GGCC	4 cut(s)	106, 154, 242, 419
BtgI	CCRYGG	1 cut(s)	235
BtgZI	GCGATG	1 cut(s)	809
BtrI	CACGTC	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	682, 811
BtsI	GCAGTG	2 cut(s)	40, 76
BtsIMutI	CAGTG	2 cut(s)	40, 76
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	6 cut(s)	96, 108, 227, 354, 427, 431
CaiI	CAGNNNCTG	3 cut(s)	391, 482, 533
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	3 cut(s)	152, 240, 241
Cfr42I	CCGCGG	1 cut(s)	238
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	480, 530
CspCI	CAANNNNNGTGG	2 cut(s)	179, 214
CviAII	CATG	7 cut(s)	136, 498, 628, 697, 748, 802, 846
CviQI	GTAC	2 cut(s)	480, 530
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	5 cut(s)	348, 570, 608, 759, 777
DpnII	GATC	5 cut(s)	346, 568, 606, 757, 775
EaeI	YGGCCR	2 cut(s)	104, 417
Eco24I	GRGCYC	2 cut(s)	231, 244
Eco88I	CYCGRG	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	305, 763
EcoT38I	GRGCYC	2 cut(s)	231, 244
Esp3I	CGTCTC	1 cut(s)	839
FaeI	CATG	7 cut(s)	139, 501, 631, 700, 751, 805, 849
FaqI	GGGAC	1 cut(s)	499
FatI	CATG	7 cut(s)	135, 497, 627, 696, 747, 801, 845
FauI	CCCGC	2 cut(s)	230, 590
FbaI	TGATCA	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	9 cut(s)	104, 282, 300, 303, 395, 625, 744, 793, 796
FokI	GGATG	2 cut(s)	689, 818
FriOI	GRGCYC	2 cut(s)	231, 244
Fsp4HI	GCNGC	9 cut(s)	104, 282, 300, 303, 395, 625, 744, 793, 796
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	9 cut(s)	104, 282, 300, 303, 395, 625, 744, 793, 796
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	4 cut(s)	106, 154, 242, 419
HapII	CCGG	5 cut(s)	155, 244, 426, 614, 713
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	7 cut(s)	139, 501, 631, 700, 751, 805, 849
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	382, 725
HpaII	CCGG	5 cut(s)	155, 244, 426, 614, 713
HphI	GGTGA	1 cut(s)	359
Hpy166II	GTNNAC	3 cut(s)	6, 171, 541
Hpy188I	TCNGA	4 cut(s)	257, 325, 555, 581
Hpy8I	GTNNAC	3 cut(s)	6, 171, 541
Hpy99I	CGWCG	2 cut(s)	10, 418
HpyAV	CCTTC	2 cut(s)	121, 662
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	7 cut(s)	135, 171, 394, 463, 497, 527, 845
HpyF3I	CTNAG	1 cut(s)	603
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	7 cut(s)	139, 501, 631, 700, 751, 805, 849
HspAI	GCGC	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	775
KspI	CCGCGG	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	346, 568, 606, 757, 775
LmnI	GCTCC	2 cut(s)	511, 616
Lsp1109I	GCAGC	4 cut(s)	268, 406, 755, 779
LweI	GCATC	2 cut(s)	286, 406
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	5 cut(s)	348, 570, 608, 759, 777
MboI	GATC	5 cut(s)	346, 568, 606, 757, 775
MboII	GAAGA	2 cut(s)	100, 752
MflI	RGATCY	1 cut(s)	606
MhlI	GDGCHC	3 cut(s)	173, 231, 244
MluCI	AATT	6 cut(s)	337, 441, 547, 583, 589, 811
MlyI	GAGTC	1 cut(s)	719
MroNI	GCCGGC	1 cut(s)	425
MslI	CAYNNNNRTG	1 cut(s)	632
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	5 cut(s)	155, 244, 426, 614, 713
MspR9I	CCNGG	3 cut(s)	244, 307, 765
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	2 cut(s)	307, 765
MvnI	CGCG	2 cut(s)	225, 237
NaeI	GCCGGC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	5 cut(s)	346, 568, 606, 757, 775
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	7 cut(s)	139, 501, 631, 700, 751, 805, 849
NlaIV	GGNNCC	3 cut(s)	241, 242, 322
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	501
PaeR7I	CTCGAG	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	1 cut(s)	828
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	9 cut(s)	105, 283, 301, 304, 396, 626, 745, 794, 797
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
PsiI	TTATAA	1 cut(s)	588
Psp6I	CCWGG	2 cut(s)	305, 763
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	2 cut(s)	305, 763
PspN4I	GGNNCC	3 cut(s)	241, 242, 322
PspOMI	GGGCCC	1 cut(s)	240
PspPI	GGNCC	3 cut(s)	152, 240, 241
PspXI	VCTCGAGB	1 cut(s)	121
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PstI	CTGCAG	1 cut(s)	396
PstNI	CAGNNNCTG	3 cut(s)	391, 482, 533
PsuI	RGATCY	1 cut(s)	606
RsaI	GTAC	2 cut(s)	481, 531
RsaNI	GTAC	2 cut(s)	480, 530
RseI	CAYNNNNRTG	1 cut(s)	632
SacII	CCGCGG	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	9 cut(s)	104, 282, 300, 303, 395, 625, 744, 793, 796
Sau3AI	GATC	5 cut(s)	346, 568, 606, 757, 775
Sau96I	GGNCC	3 cut(s)	152, 240, 241
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	3 cut(s)	244, 307, 765
SduI	GDGCHC	3 cut(s)	173, 231, 244
SfaNI	GCATC	2 cut(s)	286, 406
SfcI	CTRYAG	1 cut(s)	392
Sfr274I	CTCGAG	1 cut(s)	121
Sfr303I	CCGCGG	1 cut(s)	238
SgrBI	CCGCGG	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	6 cut(s)	337, 441, 547, 583, 589, 811
StyD4I	CCNGG	3 cut(s)	242, 305, 763
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	3 cut(s)	5, 122, 264
TasI	AATT	6 cut(s)	337, 441, 547, 583, 589, 811
TauI	GCSGC	5 cut(s)	106, 302, 305, 627, 798
TfiI	GAWTC	1 cut(s)	382
TscAI	CASTG	2 cut(s)	40, 76
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	4 cut(s)	281, 394, 743, 792
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	3 cut(s)	644, 681, 790
TspGWI	ACGGA	1 cut(s)	752
TspRI	CASTG	2 cut(s)	40, 76
VneI	GTGCAC	1 cut(s)	169
XapI	RAATTY	2 cut(s)	441, 811
XceI	RCATGY	1 cut(s)	501
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XhoI	CTCGAG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.