Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

7768555 .. 7769942

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTGAAATCCGGGATAGGTAGCAGTGTTGGGGTTGGGGAGAGGAAAACGGTGAAGAAGCCGGCGCAGGCCAGCTCAAGGAAGGGGTGTATGAGAGGGAAAGGGGGGCCGGAAAATGCTACGTGCACTTACAAGGGTGTTAGGCAGAGGACTTGGGGGAAATGGGTGGCCGAGATCCGCGAACCTAATCGCGGAGCTCGGCTCTGGCTTGGGACTTTCGACACGTCCCATGAGGCCGCCATAGCCTATGATGCTGCTGCCAGGAAGCTCTATGGCTCCGAGGCCAAGCTCAATTTGCCCGATCAACTTGTACCCCATTCTCCACAGCCTCCTGTGCAGAACAATAATCTCCAGATGGCTCAGATGCAGATGGCGAATACATCATCTGGTGCTGCATGTTTTCCAACCGTGACCGGACTACTGAACAATGATGTTTCCGTACCGGTTGTGCTCCAGGACAATACTAATAGTACCTGCCCGGTACCGATTCCTTTTCCTAATCCGAGCATGCAAACCTGCTATGGTAACACATACGAGGAGAACAACAGCAGAAGCAGCAGCAACACCACTATGTCTATGGACACAAAAGAGGAGAAGAACGAAGGAATTGATCAAGGGTTCTGGGAGAACGTAGATACAAAAGTGTTGCCGGTGTTTGATGACTCCATATGGGCCGAGGCTGCCATGTCCATCGATTTTCCGGTGATCGAGAATCACGGAATTTTCGCCAGCAACTTCGTTGATGGAAATGCTTGGGAGGCTTTACCTGCTTCTTGGTGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

261

Amino Acids

28.38

Weight (kDa)

5.47

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	44 - 92	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	482, 524, 775
Acc65I	GGTACC	1 cut(s)	481
AccB1I	GGYRCC	1 cut(s)	481
AccII	CGCG	2 cut(s)	180, 192
AciI	CCGC	3 cut(s)	178, 192, 237
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	720
AfaI	GTAC	4 cut(s)	312, 441, 472, 483
AfiI	CCNNNNNNNGG	2 cut(s)	78, 191
AflIII	ACRYGT	1 cut(s)	222
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	7
AjiI	CACGTC	1 cut(s)	225
AjnI	CCWGG	2 cut(s)	260, 453
AluBI	AGCT	4 cut(s)	75, 197, 268, 289
AluI	AGCT	4 cut(s)	75, 197, 268, 289
Alw21I	GWGCWC	3 cut(s)	128, 199, 453
Alw44I	GTGCAC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	169
AoxI	GGCC	6 cut(s)	69, 107, 168, 234, 282, 672
ApaLI	GTGCAC	1 cut(s)	124
ApeKI	GCWGC	6 cut(s)	254, 257, 392, 555, 558, 680
ApoI	RAATTY	1 cut(s)	720
AsiGI	ACCGGT	1 cut(s)	442
Asp718I	GGTACC	1 cut(s)	481
AspLEI	GCGC	2 cut(s)	67, 782
AspS9I	GGNCC	2 cut(s)	107, 672
AsuC2I	CCSGG	2 cut(s)	13, 479
AsuHPI	GGTGA	2 cut(s)	64, 715
BaeGI	GKGCMC	1 cut(s)	128
BaeI	ACNNNNGTAYC	2 cut(s)	627, 660
BanI	GGYRCC	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	3 cut(s)	128, 199, 453
BbvI	GCAGC	6 cut(s)	241, 244, 379, 567, 570, 667
BccI	CCATC	4 cut(s)	349, 364, 698, 737
BciT130I	CCWGG	2 cut(s)	262, 455
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	2 cut(s)	13, 479
BfuAI	ACCTGC	3 cut(s)	482, 524, 775
BisI	GCNGC	7 cut(s)	237, 255, 258, 393, 556, 559, 681
BlsI	GCNGC	7 cut(s)	238, 256, 259, 394, 557, 560, 682
Bme1390I	CCNGG	4 cut(s)	13, 262, 455, 479
BmgBI	CACGTC	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	107, 672
BmiI	GGNNCC	3 cut(s)	108, 277, 483
BmrFI	CCNGG	4 cut(s)	13, 262, 455, 479
BmsI	GCATC	2 cut(s)	241, 354
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
BpmI	CTGGAG	2 cut(s)	335, 437
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	2 cut(s)	13, 479
Bsa29I	ATCGAT	1 cut(s)	693
BsaAI	YACGTR	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	279, 675
BsaWI	WCCGGW	3 cut(s)	413, 442, 700
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 191
Bse118I	RCCGGY	3 cut(s)	61, 442, 649
BseBI	CCWGG	2 cut(s)	262, 455
BseCI	ATCGAT	1 cut(s)	693
BseDI	CCNNGG	2 cut(s)	279, 675
BseLI	CCNNNNNNNGG	2 cut(s)	78, 191
BseMII	CTCAG	1 cut(s)	374
BseRI	GAGGAG	2 cut(s)	551, 605
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	6 cut(s)	241, 244, 379, 567, 570, 667
BsgI	GTGCAG	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	180, 192
BshFI	GGCC	6 cut(s)	71, 109, 170, 236, 284, 674
BshNI	GGYRCC	1 cut(s)	481
BshTI	ACCGGT	1 cut(s)	442
BshVI	ATCGAT	1 cut(s)	693
BsiHKAI	GWGCWC	3 cut(s)	128, 199, 453
BsiSI	CCGG	8 cut(s)	12, 62, 110, 414, 443, 479, 650, 701
BslFI	GGGAC	2 cut(s)	211, 226
BslI	CCNNNNNNNGG	2 cut(s)	78, 191
BsmFI	GGGAC	2 cut(s)	211, 226
BsnI	GGCC	6 cut(s)	71, 109, 170, 236, 284, 674
Bsp1286I	GDGCHC	3 cut(s)	128, 199, 453
Bsp143I	GATC	4 cut(s)	174, 301, 610, 705
BspACI	CCGC	3 cut(s)	178, 192, 237
BspANI	GGCC	6 cut(s)	71, 109, 170, 236, 284, 674
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	1 cut(s)	693
BspFNI	CGCG	2 cut(s)	180, 192
BspLI	GGNNCC	3 cut(s)	108, 277, 483
BspMI	ACCTGC	3 cut(s)	482, 524, 775
BspPI	GGATC	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	481
BsrFI	RCCGGY	3 cut(s)	61, 442, 649
BssAI	RCCGGY	3 cut(s)	61, 442, 649
BssECI	CCNNGG	2 cut(s)	279, 675
BssMI	GATC	4 cut(s)	174, 301, 610, 705
Bst2UI	CCWGG	2 cut(s)	262, 455
Bst4CI	ACNGT	2 cut(s)	52, 409
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	5 cut(s)	63, 69, 73, 509, 730
BstDEI	CTNAG	2 cut(s)	360, 783
BstFNI	CGCG	2 cut(s)	180, 192
BstHHI	GCGC	2 cut(s)	67, 782
BstKTI	GATC	4 cut(s)	177, 304, 613, 708
BstMBI	GATC	4 cut(s)	174, 301, 610, 705
BstMWI	GCNNNNNNNGC	8 cut(s)	242, 251, 295, 334, 555, 680, 758, 767
BstNI	CCWGG	2 cut(s)	262, 455
BstNSI	RCATGY	2 cut(s)	399, 511
BstSCI	CCNGG	4 cut(s)	11, 260, 453, 477
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	2 cut(s)	180, 192
BstV1I	GCAGC	6 cut(s)	241, 244, 379, 567, 570, 667
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	693
BsuRI	GGCC	6 cut(s)	71, 109, 170, 236, 284, 674
BsuTUI	ATCGAT	1 cut(s)	693
BtrI	CACGTC	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	3 cut(s)	482, 524, 775
Cac8I	GCNNGC	5 cut(s)	63, 69, 73, 509, 730
CfoI	GCGC	2 cut(s)	67, 782
Cfr10I	RCCGGY	3 cut(s)	61, 442, 649
Cfr13I	GGNCC	2 cut(s)	107, 672
ClaI	ATCGAT	1 cut(s)	693
Csp6I	GTAC	4 cut(s)	311, 440, 471, 482
CspAI	ACCGGT	1 cut(s)	442
CviAII	CATG	4 cut(s)	230, 396, 508, 685
CviQI	GTAC	4 cut(s)	311, 440, 471, 482
DdeI	CTNAG	2 cut(s)	360, 783
DpnI	GATC	4 cut(s)	176, 303, 612, 707
DpnII	GATC	4 cut(s)	174, 301, 610, 705
EaeI	YGGCCR	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	197
EcoICRI	GAGCTC	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	260, 453
EcoT38I	GRGCYC	1 cut(s)	199
FaeI	CATG	4 cut(s)	233, 399, 511, 688
FaqI	GGGAC	2 cut(s)	211, 226
FatI	CATG	4 cut(s)	229, 395, 507, 684
FauNDI	CATATG	1 cut(s)	668
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	7 cut(s)	237, 255, 258, 393, 556, 559, 681
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	7 cut(s)	237, 255, 258, 393, 556, 559, 681
GlaI	GCGC	2 cut(s)	66, 781
GluI	GCNGC	7 cut(s)	237, 255, 258, 393, 556, 559, 681
GsuI	CTGGAG	2 cut(s)	335, 437
HaeIII	GGCC	6 cut(s)	71, 109, 170, 236, 284, 674
HapII	CCGG	8 cut(s)	12, 62, 110, 414, 443, 479, 650, 701
HhaI	GCGC	2 cut(s)	67, 782
Hin1II	CATG	4 cut(s)	233, 399, 511, 688
Hin6I	GCGC	2 cut(s)	65, 780
HinP1I	GCGC	2 cut(s)	65, 780
HinfI	GANTC	3 cut(s)	487, 662, 712
HpaII	CCGG	8 cut(s)	12, 62, 110, 414, 443, 479, 650, 701
HphI	GGTGA	2 cut(s)	64, 715
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	3 cut(s)	280, 363, 504
Hpy188III	TCNNGA	2 cut(s)	352, 709
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	76, 596
HpyCH4III	ACNGT	2 cut(s)	52, 409
HpyCH4IV	ACGT	3 cut(s)	122, 224, 630
HpyCH4V	TGCA	5 cut(s)	126, 337, 367, 395, 511
HpyF10VI	GCNNNNNNNGC	8 cut(s)	242, 251, 295, 334, 555, 680, 758, 767
HpyF3I	CTNAG	2 cut(s)	360, 783
HpySE526I	ACGT	3 cut(s)	122, 224, 630
Hsp92II	CATG	4 cut(s)	233, 399, 511, 688
HspAI	GCGC	2 cut(s)	65, 780
KpnI	GGTACC	1 cut(s)	485
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	4 cut(s)	174, 301, 610, 705
LmnI	GCTCC	3 cut(s)	194, 281, 456
Lsp1109I	GCAGC	6 cut(s)	241, 244, 379, 567, 570, 667
LweI	GCATC	2 cut(s)	241, 354
MaeII	ACGT	3 cut(s)	122, 224, 630
MaeIII	GTNAC	2 cut(s)	409, 524
MalI	GATC	4 cut(s)	176, 303, 612, 707
MboI	GATC	4 cut(s)	174, 301, 610, 705
MboII	GAAGA	2 cut(s)	67, 607
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	3 cut(s)	128, 199, 453
MluCI	AATT	3 cut(s)	292, 606, 720
MlyI	GAGTC	1 cut(s)	656
MmeI	TCCRAC	1 cut(s)	428
MroNI	GCCGGC	1 cut(s)	61
MslI	CAYNNNNRTG	1 cut(s)	569
MspI	CCGG	8 cut(s)	12, 62, 110, 414, 443, 479, 650, 701
MspR9I	CCNGG	4 cut(s)	13, 262, 455, 479
MvaI	CCWGG	2 cut(s)	262, 455
MvnI	CGCG	2 cut(s)	180, 192
MwoI	GCNNNNNNNGC	8 cut(s)	242, 251, 295, 334, 555, 680, 758, 767
NaeI	GCCGGC	1 cut(s)	63
NciI	CCSGG	2 cut(s)	13, 479
NdeI	CATATG	1 cut(s)	668
NdeII	GATC	4 cut(s)	174, 301, 610, 705
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	233, 399, 511, 688
NlaIV	GGNNCC	3 cut(s)	108, 277, 483
NmeAIII	GCCGAG	3 cut(s)	178, 196, 700
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	2 cut(s)	399, 511
PaeI	GCATGC	1 cut(s)	511
PdiI	GCCGGC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	487, 712
PfoI	TCCNGGA	2 cut(s)	11, 453
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	7 cut(s)	238, 256, 259, 394, 557, 560, 682
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
Ppu21I	YACGTR	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	260, 453
PspGI	CCWGG	2 cut(s)	260, 453
PspN4I	GGNNCC	3 cut(s)	108, 277, 483
PspPI	GGNCC	2 cut(s)	107, 672
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	4 cut(s)	312, 441, 472, 483
RsaNI	GTAC	4 cut(s)	311, 440, 471, 482
RseI	CAYNNNNRTG	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	199
SatI	GCNGC	7 cut(s)	237, 255, 258, 393, 556, 559, 681
Sau3AI	GATC	4 cut(s)	174, 301, 610, 705
Sau96I	GGNCC	2 cut(s)	107, 672
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	4 cut(s)	13, 262, 455, 479
SduI	GDGCHC	3 cut(s)	128, 199, 453
SfaNI	GCATC	2 cut(s)	241, 354
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	3 cut(s)	292, 606, 720
SsiI	CCGC	3 cut(s)	178, 192, 237
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	4 cut(s)	11, 260, 453, 477
TaaI	ACNGT	2 cut(s)	52, 409
TaiI	ACGT	3 cut(s)	125, 227, 633
TaqI	TCGA	3 cut(s)	219, 693, 708
TasI	AATT	3 cut(s)	292, 606, 720
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	487, 712
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	6 cut(s)	254, 257, 392, 555, 558, 680
Tsp45I	GTSAC	1 cut(s)	409
TspGWI	ACGGA	2 cut(s)	427, 732
TspRI	CASTG	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	720
XceI	RCATGY	2 cut(s)	399, 511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.