Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

5448938 .. 5449201

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1058600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGTTGCTGGTAGTAGCAGTGTTGGAGTTGCGGAGAAGAAGCCAGGGAAGTGGCCAGAGCAGGGAAGCTCGAGGAAAGGTTGCATGAGGGGAAAAGGAGGGCCGGAGAACGCTATGTGCACTTGCAAGGGCGTCAGGCAAATGAGCTGGGGGAAATGGGTTGTGGAAATTTGCGGGGCCTGGCTCTGGCTCGGGACTTTCGACACCTCCCATGAGGCTGCTCTGGCTTATGATGCCACCAACCGGAAGCTCTACGGTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

88

Amino Acids

9.37

Weight (kDa)

9.24

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	43 - 86	2.4e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 174
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	132
AfiI	CCNNNNNNNGG	3 cut(s)	62, 186, 243
AjnI	CCWGG	2 cut(s)	43, 179
AluBI	AGCT	3 cut(s)	69, 147, 250
AluI	AGCT	3 cut(s)	69, 147, 250
Alw21I	GWGCWC	1 cut(s)	122
Alw44I	GTGCAC	1 cut(s)	118
Ama87I	CYCGRG	2 cut(s)	70, 191
AoxI	GGCC	3 cut(s)	53, 101, 177
ApaLI	GTGCAC	1 cut(s)	118
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	101, 177
AvaI	CYCGRG	2 cut(s)	70, 191
BaeGI	GKGCMC	1 cut(s)	122
BalI	TGGCCA	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	205
BciT130I	CCWGG	2 cut(s)	45, 181
BfaI	CTAG	1 cut(s)	262
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	45, 181
BmeT110I	CYCGRG	2 cut(s)	70, 191
BmgT120I	GGNCC	2 cut(s)	101, 177
BmiI	GGNNCC	2 cut(s)	178, 259
BmrFI	CCNGG	2 cut(s)	45, 181
BmsI	GCATC	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 186, 243
BseBI	CCWGG	2 cut(s)	45, 181
BseDI	CCNNGG	1 cut(s)	44
BseLI	CCNNNNNNNGG	3 cut(s)	62, 186, 243
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	147
BshFI	GGCC	3 cut(s)	55, 103, 179
BsiHKAI	GWGCWC	1 cut(s)	122
BsiHKCI	CYCGRG	2 cut(s)	70, 191
BsiSI	CCGG	2 cut(s)	104, 244
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	3 cut(s)	62, 186, 243
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	3 cut(s)	55, 103, 179
BsoBI	CYCGRG	2 cut(s)	70, 191
Bsp1286I	GDGCHC	1 cut(s)	122
BspACI	CCGC	2 cut(s)	32, 174
BspANI	GGCC	3 cut(s)	55, 103, 179
BspLI	GGNNCC	2 cut(s)	178, 259
BssECI	CCNNGG	1 cut(s)	44
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	45, 181
Bst4CI	ACNGT	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 233
BstNI	CCWGG	2 cut(s)	45, 181
BstSCI	CCNGG	2 cut(s)	43, 179
BstSLI	GKGCMC	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	55, 103, 179
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	101, 177
CseI	GACGC	1 cut(s)	121
CviAII	CATG	2 cut(s)	85, 212
EaeI	YGGCCR	1 cut(s)	53
Eco88I	CYCGRG	2 cut(s)	70, 191
EcoO109I	RGGNCCY	1 cut(s)	177
EcoRII	CCWGG	2 cut(s)	43, 179
FaeI	CATG	2 cut(s)	88, 215
FaiI	YATR	4 cut(s)	86, 116, 213, 231
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	84, 211
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	262
GluI	GCNGC	1 cut(s)	219
GsaI	CCCAGC	1 cut(s)	151
HaeIII	GGCC	3 cut(s)	55, 103, 179
HapII	CCGG	2 cut(s)	104, 244
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	88, 215
HpaII	CCGG	2 cut(s)	104, 244
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	1 cut(s)	120
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	84, 120, 126
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 233
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	88, 215
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	262
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	122
MlsI	TGGCCA	1 cut(s)	55
MluCI	AATT	1 cut(s)	168
MluNI	TGGCCA	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	5 cut(s)	66, 81, 92, 208, 217
Mox20I	TGGCCA	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	55
Msp20I	TGGCCA	1 cut(s)	55
MspI	CCGG	2 cut(s)	104, 244
MspR9I	CCNGG	2 cut(s)	45, 181
MvaI	CCWGG	2 cut(s)	45, 181
MwoI	GCNNNNNNNGC	2 cut(s)	224, 233
NlaIII	CATG	2 cut(s)	88, 215
NlaIV	GGNNCC	2 cut(s)	178, 259
PaeR7I	CTCGAG	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	43, 179
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	2 cut(s)	43, 179
PspN4I	GGNNCC	2 cut(s)	178, 259
PspPI	GGNCC	2 cut(s)	101, 177
PspXI	VCTCGAGB	1 cut(s)	70
SatI	GCNGC	1 cut(s)	219
Sau96I	GGNCC	2 cut(s)	101, 177
ScrFI	CCNGG	2 cut(s)	45, 181
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	5 cut(s)	71, 82, 149, 209, 252
SfaNI	GCATC	1 cut(s)	223
Sfr274I	CTCGAG	1 cut(s)	70
SlaI	CTCGAG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	2 cut(s)	32, 174
SspMI	CTAG	1 cut(s)	262
StyD4I	CCNGG	2 cut(s)	43, 179
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	71, 201
TasI	AATT	1 cut(s)	168
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	1 cut(s)	218
TspRI	CASTG	1 cut(s)	25
VneI	GTGCAC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	168
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.