Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

46202485 .. 46203798

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0310800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAATCTCAATCTAACCATCGTCACGATGAAGAAGATTCGAAGAGCTCTAGCGATGAAGAAGCCGAGGATCTCAACGATGACTTGGGAACAGGGCGGTCATATGAGTGTGTGTTTTGCAAGAGAGGATTCACAACAGCACAGGCCTTGGGTGGACACATGAATATTCACCGCAAGGAGAGAGCCAAGCCGAGGCCTACTTCTGCTCCTACTTCAATTGCAAGCAAAGCAGCTGATGAACACGTGAGTGATCTCATGAGATCCTACCGTTCGTTGCAAAGCTACACGGGTCCACATTTTGCCACAGCTCCGGAGGTGGATGTGAATTACCGGACGTATATTCCGGCGCCTACGTGGATTGTGGGACAAGCTCACAGTGATCATGAGGAGTTATGTGCGAGGAATTATCAGCTACGGCATCAGAATTTGTTTGCTACAGATGCTGATTGTCGGAATTGGAGATCGGGGAGTGGTCTGAGCTTGGGAATTGGGCCATCAGCTCATGATGATGATGATGAGGATCATGTAGGTCATGATCATCATAAAAAAGAAATTGAACGAATTAATGATGCCTGCAGTAGTGAAGGGGATGGATTGGATTTGGAGCTTCGACTCGGTCATGATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

209

Amino Acids

23.32

Weight (kDa)

5.19

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	35 - 60	1e-05	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	2 cut(s)	97, 172
AclWI	GGATC	4 cut(s)	78, 255, 528, 617
AcsI	RAATTY	1 cut(s)	424
AcvI	CACGTG	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	241
AgsI	TTSAA	2 cut(s)	216, 557
AleI	CACNNNNGTG	1 cut(s)	246
AluBI	AGCT	9 cut(s)	48, 233, 282, 308, 371, 412, 480, 500, 607
AluI	AGCT	9 cut(s)	48, 233, 282, 308, 371, 412, 480, 500, 607
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	4 cut(s)	78, 255, 528, 617
AlwNI	CAGNNNCTG	1 cut(s)	443
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	3 cut(s)	144, 194, 491
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	1 cut(s)	424
AseI	ATTAAT	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	290, 491
AsuHPI	GGTGA	1 cut(s)	161
AsuII	TTCGAA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	50
BbrPI	CACGTG	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	242
BccI	CCATC	3 cut(s)	27, 502, 584
BceAI	ACGGC	1 cut(s)	431
BclI	TGATCA	2 cut(s)	379, 535
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	2 cut(s)	435, 574
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	1 cut(s)	231
BlsI	GCNGC	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	290, 491
BmiI	GGNNCC	2 cut(s)	291, 348
BmsI	GCATC	3 cut(s)	427, 430, 559
Bpu14I	TTCGAA	1 cut(s)	41
BsaAI	YACGTR	2 cut(s)	244, 354
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	66, 147, 191
BsaWI	WCCGGW	2 cut(s)	310, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse8I	GATNNNNATC	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	66, 147, 191
BseGI	GGATG	2 cut(s)	325, 595
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	467
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	242
BshFI	GGCC	3 cut(s)	146, 196, 493
BshNI	GGYRCC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	311, 331, 344
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	3 cut(s)	146, 196, 493
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	8 cut(s)	70, 250, 260, 379, 461, 520, 535, 622
BspACI	CCGC	2 cut(s)	97, 172
BspANI	GGCC	3 cut(s)	146, 196, 493
BspCNI	CTCAG	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	310
BspHI	TCATGA	5 cut(s)	255, 382, 502, 532, 619
BspLI	GGNNCC	2 cut(s)	291, 348
BspMAI	CTGCAG	1 cut(s)	578
BspPI	GGATC	4 cut(s)	78, 255, 528, 617
BspQI	GCTCTTC	1 cut(s)	38
BspT104I	TTCGAA	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	346
BssECI	CCNNGG	3 cut(s)	66, 147, 191
BssMI	GATC	8 cut(s)	70, 250, 260, 379, 461, 520, 535, 622
BssNI	GRCGYC	1 cut(s)	347
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	269, 377
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	347
BstBAI	YACGTR	2 cut(s)	244, 354
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	2 cut(s)	223, 574
BstDEI	CTNAG	2 cut(s)	476, 627
BstF5I	GGATG	2 cut(s)	325, 595
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	8 cut(s)	73, 253, 263, 382, 464, 523, 538, 625
BstMBI	GATC	8 cut(s)	70, 250, 260, 379, 461, 520, 535, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 440
BstSFI	CTRYAG	2 cut(s)	435, 574
BstV1I	GCAGC	1 cut(s)	242
BstX2I	RGATCY	2 cut(s)	70, 260
BstYI	RGATCY	2 cut(s)	70, 260
BsuRI	GGCC	3 cut(s)	146, 196, 493
BtgZI	GCGATG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	325, 595
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	223, 574
CaiI	CAGNNNCTG	1 cut(s)	443
CciI	TCATGA	5 cut(s)	255, 382, 502, 532, 619
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	290, 491
CviAII	CATG	7 cut(s)	160, 256, 383, 503, 524, 533, 620
DdeI	CTNAG	2 cut(s)	476, 627
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	8 cut(s)	72, 252, 262, 381, 463, 522, 537, 624
DpnII	GATC	8 cut(s)	70, 250, 260, 379, 461, 520, 535, 622
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	2 cut(s)	146, 196
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	48
Eco72I	CACGTG	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	50
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	7 cut(s)	163, 259, 386, 506, 527, 536, 623
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	7 cut(s)	159, 255, 382, 502, 523, 532, 619
FauNDI	CATATG	1 cut(s)	103
FbaI	TGATCA	2 cut(s)	379, 535
Fnu4HI	GCNGC	1 cut(s)	231
FokI	GGATG	2 cut(s)	332, 602
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	231
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	3 cut(s)	146, 196, 493
HapII	CCGG	3 cut(s)	311, 331, 344
HhaI	GCGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	7 cut(s)	163, 259, 386, 506, 527, 536, 623
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	4 cut(s)	5, 38, 129, 612
HpaII	CCGG	3 cut(s)	311, 331, 344
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	155, 293
Hpy188I	TCNGA	3 cut(s)	423, 453, 477
Hpy188III	TCNNGA	7 cut(s)	26, 256, 311, 383, 503, 533, 620
Hpy8I	GTNNAC	2 cut(s)	155, 293
HpyAV	CCTTC	1 cut(s)	578
HpyCH4III	ACNGT	2 cut(s)	269, 377
HpyCH4IV	ACGT	3 cut(s)	243, 335, 353
HpyCH4V	TGCA	4 cut(s)	120, 221, 277, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 440
HpyF3I	CTNAG	2 cut(s)	476, 627
HpySE526I	ACGT	3 cut(s)	243, 335, 353
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	7 cut(s)	163, 259, 386, 506, 527, 536, 623
HspAI	GCGC	1 cut(s)	347
KasI	GGCGCC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	379, 535
Kzo9I	GATC	8 cut(s)	70, 250, 260, 379, 461, 520, 535, 622
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	211, 313, 604
LpnPI	CCDG	6 cut(s)	78, 128, 324, 344, 357, 586
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	3 cut(s)	427, 430, 559
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	3 cut(s)	243, 335, 353
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	8 cut(s)	72, 252, 262, 381, 463, 522, 537, 624
MboI	GATC	8 cut(s)	70, 250, 260, 379, 461, 520, 535, 622
MboII	GAAGA	4 cut(s)	44, 47, 55, 71
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	2 cut(s)	70, 260
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	8 cut(s)	216, 325, 403, 424, 454, 486, 552, 561
Mly113I	GGCGCC	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	7 cut(s)	61, 119, 186, 307, 379, 393, 511
MroI	TCCGGA	1 cut(s)	310
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	3 cut(s)	106, 246, 507
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	3 cut(s)	311, 331, 344
MunI	CAATTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	227, 440
NarI	GGCGCC	1 cut(s)	347
NdeI	CATATG	1 cut(s)	103
NdeII	GATC	8 cut(s)	70, 250, 260, 379, 461, 520, 535, 622
NlaIII	CATG	7 cut(s)	163, 259, 386, 506, 527, 536, 623
NlaIV	GGNNCC	2 cut(s)	291, 348
NmeAIII	GCCGAG	2 cut(s)	91, 216
NmuCI	GTSAC	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	41
OliI	CACNNNNGTG	1 cut(s)	246
PagI	TCATGA	5 cut(s)	255, 382, 502, 532, 619
PceI	AGGCCT	2 cut(s)	146, 196
PciSI	GCTCTTC	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	5, 38, 129
PflFI	GACNNNGTC	1 cut(s)	615
PkrI	GCNGC	1 cut(s)	232
PleI	GAGTC	1 cut(s)	606
PluTI	GGCGCC	1 cut(s)	350
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	606
Ppu21I	YACGTR	2 cut(s)	244, 354
PshBI	ATTAAT	1 cut(s)	564
Psp124BI	GAGCTC	1 cut(s)	50
PspCI	CACGTG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	291, 348
PspPI	GGNCC	2 cut(s)	290, 491
PstI	CTGCAG	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	2 cut(s)	70, 260
PsyI	GACNNNGTC	1 cut(s)	615
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	3 cut(s)	106, 246, 507
SacI	GAGCTC	1 cut(s)	50
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	1 cut(s)	231
Sau3AI	GATC	8 cut(s)	70, 250, 260, 379, 461, 520, 535, 622
Sau96I	GGNCC	2 cut(s)	290, 491
SchI	GAGTC	1 cut(s)	606
SduI	GDGCHC	1 cut(s)	50
SfaNI	GCATC	3 cut(s)	427, 430, 559
SfcI	CTRYAG	2 cut(s)	435, 574
SfoI	GGCGCC	1 cut(s)	348
SfuI	TTCGAA	1 cut(s)	41
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	3 cut(s)	106, 246, 507
Sse9I	AATT	8 cut(s)	216, 325, 403, 424, 454, 486, 552, 561
SseBI	AGGCCT	2 cut(s)	146, 196
SsiI	CCGC	2 cut(s)	97, 172
SspDI	GGCGCC	1 cut(s)	346
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	50
StuI	AGGCCT	2 cut(s)	146, 196
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	269, 377
TaiI	ACGT	3 cut(s)	246, 338, 356
TaqI	TCGA	2 cut(s)	41, 610
TaqII	GACCGA	1 cut(s)	605
TasI	AATT	8 cut(s)	216, 325, 403, 424, 454, 486, 552, 561
TfiI	GAWTC	3 cut(s)	5, 38, 129
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	4 cut(s)	45, 72, 176, 252
TspRI	CASTG	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	615
VpaK11BI	GGWCC	1 cut(s)	290
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	1 cut(s)	424
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.