MD12G1252100.v1.1

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0003740
Physical Location & Seq
Forward (+)
32148809 .. 32149495
687 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1252100.v1.1.491

Sequence Viewer

Length: 687 bp
ATGGAGAAGGAAGAGAGAAAGGTGGTAAATAAGAGAGGCGGAGGAGGAGGAGGAGGTGGAGATAGCATGGGGCGGTCGAGAAAAGGTTGCATGAAGGGGAAGGGAGGGCCGGAGAATGCTTTATGCAGCTTTAGAGGAGTGAGGCAGCGGACGTGGGGGAAATGGGTGGCGGAGATTCGAGAGCCGAATCGCGGGGCTAGGCTTTGGCTCGGGACTTTCAACACTTCCACGGAGGCAGCACTTGCTTATGATGAAGCAGCTAGAAAGCTCTACGGCTCCTCCGCCAAGCTCAACTTGCCAGACCACCACCAGCACCCGTCGACCTCATCGTTGTCATCTGCTAATTTGACCTCTTCGGTTACTAAGCCTACTTCTGAGTATGGAGACTCCGTGAGGGGTTCGAGTAGTGGCAGTAGTGGGGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGATGCTTCTTTGGCTTCATTGATGGTTGGAGGTTGGAGTGTTGGAGATTATTTGTGGGAAAATGGTAGTAGTACTAACAGTACCACTGGTTGTGTGTTGAGCAATTGGGGTGCAGTTTGTGGAGAAAAGGATTTCATAGAGATGAATGACATGGGAGTTATGATGGAGTTGGGAGGAGATGAGTTCATAAATTGGGATGCTTTGGAACCTCCATCATGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

229

Amino Acids

23.65

Weight (kDa)

5.69

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 43 - 92 6.8e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 320
AccII CGCG 1 cut(s) 192
AciI CCGC 6 cut(s) 39, 73, 148, 170, 192, 282
AfaI GTAC 2 cut(s) 535, 544
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 220
AjiI CACGTC 1 cut(s) 153
AluBI AGCT 4 cut(s) 129, 260, 268, 289
AluI AGCT 4 cut(s) 129, 260, 268, 289
Alw26I GTCTC 1 cut(s) 378
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 1 cut(s) 107
ApeKI GCWGC 4 cut(s) 126, 145, 236, 257
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 2 cut(s) 455, 473
AvaI CYCGRG 1 cut(s) 209
BbvI GCAGC 4 cut(s) 138, 157, 248, 269
BccI CCATC 4 cut(s) 440, 478, 619, 682
BceAI ACGGC 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 378
BfaI CTAG 2 cut(s) 198, 261
BisI GCNGC 4 cut(s) 127, 146, 237, 258
BlsI GCNGC 4 cut(s) 128, 147, 238, 259
BmcAI AGTACT 1 cut(s) 535
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 277, 669
BmsI GCATC 2 cut(s) 454, 649
BsaJI CCNNGG 1 cut(s) 228
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 375, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 553
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 664
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 7 cut(s) 57, 60, 63, 66, 150, 268, 651
BseXI GCAGC 4 cut(s) 138, 157, 248, 269
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 1 cut(s) 192
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 1 cut(s) 109
BsiEI CGRYCG 1 cut(s) 77
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 121
BsnI GGCC 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 209
BspACI CCGC 6 cut(s) 39, 73, 148, 170, 192, 282
BspANI GGCC 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 367
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 277, 669
BsrI ACTGG 1 cut(s) 553
BssECI CCNNGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 2 cut(s) 6, 358
BstAPI GCANNNNNTGC 1 cut(s) 242
BstDEI CTNAG 2 cut(s) 363, 375
BstDSI CCRYGG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 664
BstFNI CGCG 1 cut(s) 192
BstMAI GTCTC 1 cut(s) 378
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 3 cut(s) 242, 295, 473
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 4 cut(s) 138, 157, 248, 269
BsuRI GGCC 1 cut(s) 109
BtgI CCRYGG 1 cut(s) 228
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 664
BtsIMutI CAGTG 1 cut(s) 546
Cfr13I GGNCC 1 cut(s) 107
Csp6I GTAC 2 cut(s) 534, 543
CviAII CATG 4 cut(s) 67, 91, 613, 678
CviQI GTAC 2 cut(s) 534, 543
DdeI CTNAG 2 cut(s) 363, 375
Eam1104I CTCTTC 2 cut(s) 6, 358
EarI CTCTTC 2 cut(s) 6, 358
EciI GGCGGA 3 cut(s) 54, 185, 271
Eco88I CYCGRG 1 cut(s) 209
FaeI CATG 4 cut(s) 70, 94, 616, 681
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 1 cut(s) 226
FatI CATG 4 cut(s) 66, 90, 612, 677
FauI CCCGC 1 cut(s) 185
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 4 cut(s) 127, 146, 237, 258
FokI GGATG 1 cut(s) 671
Fsp4HI GCNGC 4 cut(s) 127, 146, 237, 258
FspBI CTAG 2 cut(s) 198, 261
GluI GCNGC 4 cut(s) 127, 146, 237, 258
HaeIII GGCC 1 cut(s) 109
HapII CCGG 1 cut(s) 110
Hin1II CATG 4 cut(s) 70, 94, 616, 681
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HinfI GANTC 3 cut(s) 175, 187, 386
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 455, 473
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 3 cut(s) 78, 179, 211
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 2 cut(s) 88, 94
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 3 cut(s) 90, 126, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 242, 295, 473
HpyF3I CTNAG 2 cut(s) 363, 375
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 4 cut(s) 70, 94, 616, 681
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 4 cut(s) 123, 312, 323, 534
Lsp1109I GCAGC 4 cut(s) 138, 157, 248, 269
LweI GCATC 2 cut(s) 454, 649
MaeI CTAG 2 cut(s) 198, 261
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 358
MboII GAAGA 2 cut(s) 23, 345
MfeI CAATTG 1 cut(s) 565
MluCI AATT 3 cut(s) 343, 565, 652
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 3 cut(s) 469, 476, 484
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 148
MspI CCGG 1 cut(s) 110
MunI CAATTG 1 cut(s) 565
Mva1269I GAATGC 1 cut(s) 121
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 242, 295, 473
NlaIII CATG 4 cut(s) 70, 94, 616, 681
NlaIV GGNNCC 2 cut(s) 277, 669
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 175, 187
PkrI GCNGC 4 cut(s) 128, 147, 238, 259
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 277, 669
PspPI GGNCC 1 cut(s) 107
RsaI GTAC 2 cut(s) 535, 544
RsaNI GTAC 2 cut(s) 534, 543
RseI CAYNNNNRTG 1 cut(s) 602
SalI GTCGAC 1 cut(s) 319
SatI GCNGC 4 cut(s) 127, 146, 237, 258
Sau96I GGNCC 1 cut(s) 107
ScaI AGTACT 1 cut(s) 535
SchI GAGTC 1 cut(s) 380
SfaNI GCATC 2 cut(s) 454, 649
SmiMI CAYNNNNRTG 1 cut(s) 602
Sse9I AATT 3 cut(s) 343, 565, 652
SsiI CCGC 6 cut(s) 39, 73, 148, 170, 192, 282
SspMI CTAG 2 cut(s) 198, 261
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 1 cut(s) 155
TaqI TCGA 4 cut(s) 77, 178, 320, 401
TasI AATT 3 cut(s) 343, 565, 652
TatI WGTACW 1 cut(s) 533
TfiI GAWTC 2 cut(s) 175, 187
TscAI CASTG 1 cut(s) 553
TseI GCWGC 4 cut(s) 126, 145, 236, 257
TspDTI ATGAA 6 cut(s) 107, 267, 468, 586, 620, 637
TspGWI ACGGA 2 cut(s) 245, 379
TspRI CASTG 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 2 cut(s) 198, 261
ZrmI AGTACT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.