Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

3897068 .. 3897707

Gene Structure 640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTTGCTGGTAGTAGCAGCGTTGGGGTTGCGGAGAAGAAGCCGGTGAAGCGGCCAGCGCAGGGAAGCTCGAGGAGGGGTTGCATGAGGGGGAAAGGAGGGCCGGAGAACGCTATGTGCACTTACAAGGGCGTCAGGCAAAGGACGTGGGGGGAAATGGGTGGCGGAAATCCGCAAGCTGCTCTGGCTTATGATGCCACCGCTCGGAGGCTCTACGGTGCCCAGGCGAAGCTCAATTTACCAGATCAACAAGCCCCTAAATATCATCACCATCAATTGAACCAATACCTGCAGCATCAAGTATTTCGCTCGTCGGCCAATCCCGGTGTGCCTCCTCAAATTCCGAACCAAACCCTTGTGCAGAACAATCTATCAGGTACCGGGACTAATCCTGCATGTTATGCTGCTCCTGTGAAAGATATTGCAGCACCTGTTATTTATAATAATTCTGCGAATGTGAAGGTGGATCAGCACCCCGGAAATTATAATTCTCGCCGGGCTGAGAACCAGCCGGAGCAGGGGGGCATGAAGGTGGAGGAGAATATGAGTAGTCGTGTGAACAATGAAGGCATGGATGGGATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

196

Amino Acids

21.06

Weight (kDa)

9.64

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	441, 486
Acc36I	ACCTGC	1 cut(s)	297
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	2 cut(s)	218, 377
AccBSI	CCGCTC	1 cut(s)	203
AciI	CCGC	5 cut(s)	32, 52, 165, 173, 201
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	2 cut(s)	53, 315
AcsI	RAATTY	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	4 cut(s)	62, 204, 207, 518
AgsI	TTSAA	1 cut(s)	280
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	3 cut(s)	69, 179, 232
AluI	AGCT	3 cut(s)	69, 179, 232
Alw21I	GWGCWC	1 cut(s)	122
Alw44I	GTGCAC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	474
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	3 cut(s)	53, 101, 315
ApaLI	GTGCAC	1 cut(s)	118
ApeKI	GCWGC	5 cut(s)	18, 179, 292, 404, 425
ApoI	RAATTY	1 cut(s)	339
Asp718I	GGTACC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	4 cut(s)	324, 382, 477, 497
AsuHPI	GGTGA	2 cut(s)	58, 260
AvaI	CYCGRG	1 cut(s)	70
BaeGI	GKGCMC	2 cut(s)	122, 223
BanI	GGYRCC	2 cut(s)	218, 377
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	5 cut(s)	30, 166, 304, 391, 437
BccI	CCATC	2 cut(s)	279, 569
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	4 cut(s)	324, 382, 477, 497
BfaI	CTAG	1 cut(s)	586
BfmI	CTRYAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	297
BisI	GCNGC	6 cut(s)	19, 53, 180, 293, 405, 426
BlsI	GCNGC	6 cut(s)	20, 54, 181, 294, 406, 427
Bme1390I	CCNGG	5 cut(s)	224, 324, 382, 477, 497
BmeT110I	CYCGRG	1 cut(s)	70
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	220, 379
BmrFI	CCNGG	5 cut(s)	224, 324, 382, 477, 497
BmsI	GCATC	2 cut(s)	184, 304
BpuMI	CCSGG	4 cut(s)	324, 382, 477, 497
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	222, 475
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 204, 207, 518
Bse118I	RCCGGY	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	222, 475
BseGI	GGATG	1 cut(s)	580
BseLI	CCNNNNNNNGG	4 cut(s)	62, 204, 207, 518
BseMII	CTCAG	1 cut(s)	492
BseRI	GAGGAG	3 cut(s)	88, 324, 551
BseSI	GKGCMC	2 cut(s)	122, 223
BseXI	GCAGC	5 cut(s)	30, 166, 304, 391, 437
BsgI	GTGCAG	1 cut(s)	380
BshFI	GGCC	3 cut(s)	55, 103, 317
BshNI	GGYRCC	2 cut(s)	218, 377
BsiHKAI	GWGCWC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	7 cut(s)	44, 104, 324, 381, 477, 496, 512
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	4 cut(s)	62, 204, 207, 518
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	55, 103, 317
BsoBI	CYCGRG	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	122, 223
Bsp143I	GATC	2 cut(s)	244, 466
BspACI	CCGC	5 cut(s)	32, 52, 165, 173, 201
BspANI	GGCC	3 cut(s)	55, 103, 317
BspCNI	CTCAG	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	220, 379
BspMAI	CTGCAG	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	474
BspT107I	GGYRCC	2 cut(s)	218, 377
BsrBI	CCGCTC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	222, 475
BssMI	GATC	2 cut(s)	244, 466
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	218
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	57, 177
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	1 cut(s)	580
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	247, 469
BstMBI	GATC	2 cut(s)	244, 466
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 58, 185, 194, 401
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	5 cut(s)	222, 322, 380, 475, 495
BstSFI	CTRYAG	1 cut(s)	290
BstSLI	GKGCMC	2 cut(s)	122, 223
BstV1I	GCAGC	5 cut(s)	30, 166, 304, 391, 437
BsuRI	GGCC	3 cut(s)	55, 103, 317
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	580
BveI	ACCTGC	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	57, 177
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	101
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	378
CspCI	CAANNNNNGTGG	2 cut(s)	128, 163
CviAII	CATG	4 cut(s)	85, 396, 526, 571
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	2 cut(s)	246, 468
DpnII	GATC	2 cut(s)	244, 466
EaeI	YGGCCR	2 cut(s)	53, 315
EciI	GGCGGA	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	4 cut(s)	88, 399, 529, 574
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	4 cut(s)	84, 395, 525, 570
Fnu4HI	GCNGC	6 cut(s)	19, 53, 180, 293, 405, 426
Fsp4HI	GCNGC	6 cut(s)	19, 53, 180, 293, 405, 426
FspBI	CTAG	1 cut(s)	586
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	6 cut(s)	19, 53, 180, 293, 405, 426
HaeIII	GGCC	3 cut(s)	55, 103, 317
HapII	CCGG	7 cut(s)	44, 104, 324, 381, 477, 496, 512
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	4 cut(s)	88, 399, 529, 574
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HpaII	CCGG	7 cut(s)	44, 104, 324, 381, 477, 496, 512
HphI	GGTGA	2 cut(s)	58, 260
Hpy166II	GTNNAC	2 cut(s)	120, 559
Hpy188I	TCNGA	2 cut(s)	207, 345
Hpy8I	GTNNAC	2 cut(s)	120, 559
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	3 cut(s)	454, 523, 560
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	6 cut(s)	84, 120, 292, 361, 395, 425
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 58, 185, 194, 401
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	88, 399, 529, 574
HspAI	GCGC	1 cut(s)	59
KpnI	GGTACC	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	244, 466
LmnI	GCTCC	2 cut(s)	412, 514
Lsp1109I	GCAGC	5 cut(s)	30, 166, 304, 391, 437
LweI	GCATC	2 cut(s)	184, 304
MaeI	CTAG	1 cut(s)	586
MaeII	ACGT	1 cut(s)	146
MalI	GATC	2 cut(s)	246, 468
MbiI	CCGCTC	1 cut(s)	203
MboI	GATC	2 cut(s)	244, 466
MboII	GAAGA	1 cut(s)	49
MfeI	CAATTG	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	122, 223
MluCI	AATT	6 cut(s)	235, 275, 339, 445, 481, 487
MnlI	CCTC	8 cut(s)	66, 69, 81, 92, 201, 342, 345, 529
MslI	CAYNNNNRTG	1 cut(s)	530
MspI	CCGG	7 cut(s)	44, 104, 324, 381, 477, 496, 512
MspR9I	CCNGG	5 cut(s)	224, 324, 382, 477, 497
MunI	CAATTG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	5 cut(s)	49, 58, 185, 194, 401
NciI	CCSGG	4 cut(s)	324, 382, 477, 497
NdeII	GATC	2 cut(s)	244, 466
NlaIII	CATG	4 cut(s)	88, 399, 529, 574
NlaIV	GGNNCC	2 cut(s)	220, 379
NspI	RCATGY	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	70
PkrI	GCNGC	6 cut(s)	20, 54, 181, 294, 406, 427
PsiI	TTATAA	2 cut(s)	441, 486
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	220, 379
PspPI	GGNCC	1 cut(s)	101
PspXI	VCTCGAGB	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	530
SatI	GCNGC	6 cut(s)	19, 53, 180, 293, 405, 426
Sau3AI	GATC	2 cut(s)	244, 466
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	5 cut(s)	224, 324, 382, 477, 497
SduI	GDGCHC	2 cut(s)	122, 223
SetI	ASST	9 cut(s)	71, 149, 181, 234, 291, 379, 433, 465, 534
SfaNI	GCATC	2 cut(s)	184, 304
SfcI	CTRYAG	1 cut(s)	290
Sfr274I	CTCGAG	1 cut(s)	70
SlaI	CTCGAG	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	6 cut(s)	235, 275, 339, 445, 481, 487
SsiI	CCGC	5 cut(s)	32, 52, 165, 173, 201
SspMI	CTAG	1 cut(s)	586
StyD4I	CCNGG	5 cut(s)	222, 322, 380, 475, 495
TaaI	ACNGT	1 cut(s)	218
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	71
TasI	AATT	6 cut(s)	235, 275, 339, 445, 481, 487
TauI	GCSGC	1 cut(s)	55
TseI	GCWGC	5 cut(s)	18, 179, 292, 404, 425
TspDTI	ATGAA	2 cut(s)	542, 579
VneI	GTGCAC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	339
XceI	RCATGY	1 cut(s)	399
XhoI	CTCGAG	1 cut(s)	70
XspI	CTAG	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.