Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

3874736 .. 3875227

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGTGGTGGAAATCCGCGAGCCCCACCGCGGGCCGGCCTCTGGCTCAGGACTTTCGACACCTCCTATGAGGCTGCTCTGGCTTATGATGCCGCCGGCCGGAAGCTCTACGGTTCCCAGGCGAAGCTAAATTTGCCTGATCAACAAGCCCCTAAATATCACCGTCATCAATTGAACCCGCACCTGCAGCATCAAGTATTTCCCTCGTCCATCAATCCCGGCGTGCCACCTCAAATTCCAAATCAAAACCTTGTGCAGAACAATCTATCAGGTACTGGGACTAATCCTGCATGTTATGCTGCTCCCGAGAAAGATATTGCAGTACCTGTTATTTGCAATAATTGTGCGAACGTGAAGGTGGATCAGCCCCCCGGAAATTATAATTATCGCCGGGCTGAGACCCAGCCGGAGCAGGGGGGCATGAAAGTGGAGGAGAATATGACTAGTGGTGTGAACAACAAAGGAATCGTGGGATATTCTGGGGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

164

Amino Acids

17.57

Weight (kDa)

8.79

Isoelectric Point (pI)

43.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AarI	CACCTGC	1 cut(s)	192
Acc36I	ACCTGC	1 cut(s)	192
AccII	CGCG	2 cut(s)	19, 31
AciI	CCGC	5 cut(s)	17, 29, 31, 93, 179
AclWI	GGATC	1 cut(s)	369
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	130, 234
AfaI	GTAC	2 cut(s)	274, 324
AfiI	CCNNNNNNNGG	6 cut(s)	30, 31, 35, 42, 99, 413
AgsI	TTSAA	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	2 cut(s)	106, 127
AluI	AGCT	2 cut(s)	106, 127
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	369
AlwNI	CAGNNNCTG	2 cut(s)	275, 326
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	3 cut(s)	33, 37, 97
ApeKI	GCWGC	3 cut(s)	74, 187, 299
ApoI	RAATTY	2 cut(s)	130, 234
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	3 cut(s)	219, 372, 392
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	61, 199, 286
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	3 cut(s)	219, 372, 392
BcoDI	GTCTC	1 cut(s)	392
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	192
BisI	GCNGC	4 cut(s)	75, 93, 188, 300
BlsI	GCNGC	4 cut(s)	76, 94, 189, 301
Bme1390I	CCNGG	4 cut(s)	119, 219, 372, 392
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	4 cut(s)	119, 219, 372, 392
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	79, 199
BmuI	ACTGGG	1 cut(s)	285
Bpu10I	CCTNAGC	1 cut(s)	47
BpuMI	CCSGG	3 cut(s)	219, 372, 392
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	29, 117, 370
Bsc4I	CCNNNNNNNGG	6 cut(s)	30, 31, 35, 42, 99, 413
Bse118I	RCCGGY	2 cut(s)	35, 95
Bse1I	ACTGG	1 cut(s)	280
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	29, 117, 370
BseLI	CCNNNNNNNGG	6 cut(s)	30, 31, 35, 42, 99, 413
BseMII	CTCAG	2 cut(s)	61, 387
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	446
BseX3I	CGGCCG	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	61, 199, 286
BseYI	CCCAGC	1 cut(s)	402
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	2 cut(s)	19, 31
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	35, 39, 99
BsiEI	CGRYCG	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	7 cut(s)	36, 96, 100, 219, 372, 391, 407
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	6 cut(s)	30, 31, 35, 42, 99, 413
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	35, 39, 99
Bso31I	GGTCTC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	139, 361
BspACI	CCGC	5 cut(s)	17, 29, 31, 93, 179
BspANI	GGCC	3 cut(s)	35, 39, 99
BspCNI	CTCAG	2 cut(s)	60, 388
BspFNI	CGCG	2 cut(s)	19, 31
BspLI	GGNNCC	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	392
BsrFI	RCCGGY	2 cut(s)	35, 95
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	2 cut(s)	35, 95
BssECI	CCNNGG	3 cut(s)	29, 117, 370
BssMI	GATC	2 cut(s)	139, 361
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	2 cut(s)	113, 164
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	5 cut(s)	21, 33, 37, 97, 224
BstDEI	CTNAG	2 cut(s)	47, 396
BstDSI	CCRYGG	1 cut(s)	29
BstFNI	CGCG	2 cut(s)	19, 31
BstKTI	GATC	2 cut(s)	142, 364
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	2 cut(s)	139, 361
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 89, 133, 187, 296
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	4 cut(s)	117, 217, 370, 390
BstSFI	CTRYAG	1 cut(s)	185
BstUI	CGCG	2 cut(s)	19, 31
BstV1I	GCAGC	3 cut(s)	61, 199, 286
BstZI	CGGCCG	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	35, 39, 99
BtgI	CCRYGG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	5 cut(s)	21, 33, 37, 97, 224
CaiI	CAGNNNCTG	2 cut(s)	275, 326
Cfr10I	RCCGGY	2 cut(s)	35, 95
Cfr13I	GGNCC	1 cut(s)	33
Cfr42I	CCGCGG	1 cut(s)	32
Csp6I	GTAC	2 cut(s)	273, 323
CviAII	CATG	3 cut(s)	291, 421, 489
CviQI	GTAC	2 cut(s)	273, 323
DdeI	CTNAG	2 cut(s)	47, 396
DpnI	GATC	2 cut(s)	141, 363
DpnII	GATC	2 cut(s)	139, 361
EaeI	YGGCCR	1 cut(s)	97
EagI	CGGCCG	1 cut(s)	97
EclXI	CGGCCG	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	392
Eco52I	CGGCCG	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	25
FaeI	CATG	3 cut(s)	294, 424, 492
FaiI	YATR	8 cut(s)	69, 87, 292, 297, 381, 422, 440, 490
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	3 cut(s)	290, 420, 488
FauI	CCCGC	2 cut(s)	24, 186
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	4 cut(s)	75, 93, 188, 300
FriOI	GRGCYC	1 cut(s)	25
FseI	GGCCGGCC	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	75, 93, 188, 300
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	4 cut(s)	75, 93, 188, 300
GsaI	CCCAGC	1 cut(s)	406
HaeIII	GGCC	3 cut(s)	35, 39, 99
HapII	CCGG	7 cut(s)	36, 96, 100, 219, 372, 391, 407
Hin1II	CATG	3 cut(s)	294, 424, 492
HinfI	GANTC	1 cut(s)	465
HpaII	CCGG	7 cut(s)	36, 96, 100, 219, 372, 391, 407
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188III	TCNNGA	2 cut(s)	49, 305
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	113, 164
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	5 cut(s)	187, 256, 290, 320, 336
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 89, 133, 187, 296
HpyF3I	CTNAG	2 cut(s)	47, 396
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	294, 424, 492
KroI	GCCGGC	2 cut(s)	35, 95
KroNI	GCCGGC	2 cut(s)	37, 97
Ksp22I	TGATCA	1 cut(s)	139
KspI	CCGCGG	1 cut(s)	32
Kzo9I	GATC	2 cut(s)	139, 361
LmnI	GCTCC	2 cut(s)	307, 409
Lsp1109I	GCAGC	3 cut(s)	61, 199, 286
LweI	GCATC	2 cut(s)	79, 199
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	351
MalI	GATC	2 cut(s)	141, 363
MboI	GATC	2 cut(s)	139, 361
MfeI	CAATTG	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	6 cut(s)	130, 170, 234, 340, 376, 382
MnlI	CCTC	6 cut(s)	50, 64, 73, 214, 240, 424
MroNI	GCCGGC	2 cut(s)	35, 95
MslI	CAYNNNNRTG	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	7 cut(s)	36, 96, 100, 219, 372, 391, 407
MspR9I	CCNGG	4 cut(s)	119, 219, 372, 392
MunI	CAATTG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	2 cut(s)	19, 31
MwoI	GCNNNNNNNGC	5 cut(s)	80, 89, 133, 187, 296
NaeI	GCCGGC	2 cut(s)	37, 97
NciI	CCSGG	3 cut(s)	219, 372, 392
NdeII	GATC	2 cut(s)	139, 361
NgoMIV	GCCGGC	2 cut(s)	35, 95
NlaIII	CATG	3 cut(s)	294, 424, 492
NlaIV	GGNNCC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	192
PdiI	GCCGGC	2 cut(s)	37, 97
PfeI	GAWTC	1 cut(s)	465
PkrI	GCNGC	4 cut(s)	76, 94, 189, 301
PsiI	TTATAA	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	189
PstNI	CAGNNNCTG	2 cut(s)	275, 326
RigI	GGCCGGCC	1 cut(s)	39
RsaI	GTAC	2 cut(s)	274, 324
RsaNI	GTAC	2 cut(s)	273, 323
RseI	CAYNNNNRTG	1 cut(s)	425
SacII	CCGCGG	1 cut(s)	32
SatI	GCNGC	4 cut(s)	75, 93, 188, 300
Sau3AI	GATC	2 cut(s)	139, 361
Sau96I	GGNCC	1 cut(s)	33
ScrFI	CCNGG	4 cut(s)	119, 219, 372, 392
SduI	GDGCHC	1 cut(s)	25
SfaNI	GCATC	2 cut(s)	79, 199
SfcI	CTRYAG	1 cut(s)	185
Sfr303I	CCGCGG	1 cut(s)	32
SgrBI	CCGCGG	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	425
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	6 cut(s)	130, 170, 234, 340, 376, 382
SsiI	CCGC	5 cut(s)	17, 29, 31, 93, 179
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	4 cut(s)	117, 217, 370, 390
TaaI	ACNGT	2 cut(s)	113, 164
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	57
TasI	AATT	6 cut(s)	130, 170, 234, 340, 376, 382
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	465
TseI	GCWGC	3 cut(s)	74, 187, 299
TspDTI	ATGAA	1 cut(s)	437
XapI	RAATTY	2 cut(s)	130, 234
XceI	RCATGY	1 cut(s)	294
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.