Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Forward (+)

30112043 .. 30113176

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G354000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAAAGGAAGGGAGAAAGGTAGGGAAGAAAGCTACAGCAAGCATGGGGCGCTCAAGAAAAGGGTGCATGAAAGGGAAAGGAGGGCCAGAGAATGCACTGTGCAGCTTCAGGGGAGTGAGGCAGAGGACTTGGGGGAAATGGGTGGCTGAGATTCGAGAGCCCAATCGTGGGGCTCGGCTTTGGCTGGGCACTTTCAACACCTCAACAGAGGCAGCTCTTGCTTATGATGAAGCAGCTCGAAAGCTCTACGGTTCCTCTGCCAAGCTCAACTTGCCAGATCACAAACCATCATCATCATCAACTGCAAATTCAAGTTGTTCACGCACCAAGTCCACCTCTGATCAGTATAATATGAAGGGTGGATTTGGGGAATCTGTGAAGGGGGGCTCAAGTGGAGATGGTTGTGGTAAGTTAGGTGGTGAAGCTTGTTCAGATTCATTAATATTTGGAGGTTGGAGTATTGGAGATGGCTTATGGGAGAGTACTACTACTACTGGTGGTGCTAGTGCTAGTACTGGGACTACTAGTCCTGTATTGAGCAGTTGGGCTGGACTTTGTGGTGAAAAGGATTTCCTAGAGATGAATGACATAGGAGCTGACGTTATGATGGGGGGAGGAGATGAATTTATAAATTGGGATGCTTTGGGACCTCCATCATCATGGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

224

Amino Acids

23.34

Weight (kDa)

8.5

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AcsI	RAATTY	2 cut(s)	310, 626
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	2 cut(s)	487, 517
AfiI	CCNNNNNNNGG	2 cut(s)	170, 171
AgsI	TTSAA	2 cut(s)	199, 315
AhdI	GACNNNNNGTC	1 cut(s)	528
AhlI	ACTAGT	1 cut(s)	527
AluBI	AGCT	8 cut(s)	35, 108, 218, 239, 247, 268, 428, 599
AluI	AGCT	8 cut(s)	35, 108, 218, 239, 247, 268, 428, 599
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	105, 215, 236
ApoI	RAATTY	2 cut(s)	310, 626
AseI	ATTAAT	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	86, 650, 666
AsuHPI	GGTGA	2 cut(s)	434, 575
AvaII	GGWCC	2 cut(s)	650, 666
BaeGI	GKGCMC	1 cut(s)	194
BanII	GRGCYC	3 cut(s)	165, 178, 392
BbvI	GCAGC	3 cut(s)	117, 227, 248
BccI	CCATC	5 cut(s)	298, 395, 464, 604, 664
BclI	TGATCA	1 cut(s)	343
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	4 cut(s)	507, 513, 528, 578
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	3 cut(s)	106, 216, 237
BlsI	GCNGC	3 cut(s)	107, 217, 238
BmcAI	AGTACT	2 cut(s)	487, 517
Bme18I	GGWCC	2 cut(s)	650, 666
BmeRI	GACNNNNNGTC	1 cut(s)	528
BmgT120I	GGNCC	3 cut(s)	86, 650, 666
BmiI	GGNNCC	2 cut(s)	256, 651
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	631
BmuI	ACTGGG	1 cut(s)	528
BpuEI	CTTGAG	2 cut(s)	40, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 171
Bse1I	ACTGG	2 cut(s)	502, 523
BseGI	GGATG	1 cut(s)	646
BseLI	CCNNNNNNNGG	2 cut(s)	170, 171
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	502, 523
BseRI	GAGGAG	1 cut(s)	633
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	117, 227, 248
BseYI	CCCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	88
BslFI	GGGAC	2 cut(s)	535, 663
BslI	CCNNNNNNNGG	2 cut(s)	170, 171
BsmFI	GGGAC	2 cut(s)	535, 663
BsmI	GAATGC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	88
Bsp1286I	GDGCHC	4 cut(s)	165, 178, 194, 392
Bsp143I	GATC	2 cut(s)	280, 343
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	256, 651
BsrI	ACTGG	2 cut(s)	502, 523
BssMI	GATC	2 cut(s)	280, 343
Bst4CI	ACNGT	2 cut(s)	102, 254
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	646
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	2 cut(s)	283, 346
BstMBI	GATC	2 cut(s)	280, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 221, 274
BstSFI	CTRYAG	1 cut(s)	36
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	117, 227, 248
BstXI	CCANNNNNNTGG	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	88
BtsCI	GGATG	1 cut(s)	646
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	86, 650, 666
Csp6I	GTAC	2 cut(s)	486, 516
CviAII	CATG	3 cut(s)	46, 70, 663
CviQI	GTAC	2 cut(s)	486, 516
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	282, 345
DpnII	GATC	2 cut(s)	280, 343
DriI	GACNNNNNGTC	1 cut(s)	528
Eam1105I	GACNNNNNGTC	1 cut(s)	528
Eco24I	GRGCYC	3 cut(s)	165, 178, 392
Eco47I	GGWCC	2 cut(s)	650, 666
Eco57I	CTGAAG	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	650
EcoT38I	GRGCYC	3 cut(s)	165, 178, 392
FaeI	CATG	3 cut(s)	49, 73, 666
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FaqI	GGGAC	2 cut(s)	535, 663
FatI	CATG	3 cut(s)	45, 69, 662
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	3 cut(s)	106, 216, 237
FokI	GGATG	1 cut(s)	653
FriOI	GRGCYC	3 cut(s)	165, 178, 392
Fsp4HI	GCNGC	3 cut(s)	106, 216, 237
FspBI	CTAG	4 cut(s)	507, 513, 528, 578
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	106, 216, 237
GsaI	CCCAGC	1 cut(s)	191
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	3 cut(s)	49, 73, 666
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	3 cut(s)	154, 374, 437
HphI	GGTGA	2 cut(s)	434, 575
Hpy166II	GTNNAC	2 cut(s)	323, 336
Hpy188I	TCNGA	2 cut(s)	343, 436
Hpy188III	TCNNGA	2 cut(s)	57, 158
Hpy8I	GTNNAC	2 cut(s)	323, 336
HpyAV	CCTTC	3 cut(s)	5, 352, 376
HpyCH4III	ACNGT	2 cut(s)	102, 254
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	4 cut(s)	69, 98, 105, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 221, 274
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	3 cut(s)	49, 73, 666
HspAI	GCGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	280, 343
LmnI	GCTCC	1 cut(s)	596
LpnPI	CCDG	8 cut(s)	97, 102, 173, 291, 483, 504, 537, 546
Lsp1109I	GCAGC	3 cut(s)	117, 227, 248
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	4 cut(s)	507, 513, 528, 578
MaeII	ACGT	1 cut(s)	603
MalI	GATC	2 cut(s)	282, 345
MboI	GATC	2 cut(s)	280, 343
MboII	GAAGA	1 cut(s)	40
MhlI	GDGCHC	4 cut(s)	165, 178, 194, 392
MluCI	AATT	3 cut(s)	310, 626, 634
MmeI	TCCRAC	1 cut(s)	437
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	661
Mva1269I	GAATGC	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	51, 221, 274
NdeII	GATC	2 cut(s)	280, 343
NlaIII	CATG	3 cut(s)	49, 73, 666
NlaIV	GGNNCC	2 cut(s)	256, 651
NmeAIII	GCCGAG	1 cut(s)	157
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	154, 374, 437
PkrI	GCNGC	3 cut(s)	107, 217, 238
PpuMI	RGGWCCY	1 cut(s)	650
PshBI	ATTAAT	1 cut(s)	443
PsiI	TTATAA	1 cut(s)	632
Psp5II	RGGWCCY	1 cut(s)	650
PspFI	CCCAGC	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	256, 651
PspPI	GGNCC	3 cut(s)	86, 650, 666
PspPPI	RGGWCCY	1 cut(s)	650
RsaI	GTAC	2 cut(s)	487, 517
RsaNI	GTAC	2 cut(s)	486, 516
RseI	CAYNNNNRTG	1 cut(s)	661
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	3 cut(s)	106, 216, 237
Sau3AI	GATC	2 cut(s)	280, 343
Sau96I	GGNCC	3 cut(s)	86, 650, 666
ScaI	AGTACT	2 cut(s)	487, 517
SduI	GDGCHC	4 cut(s)	165, 178, 194, 392
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	36
SinI	GGWCC	2 cut(s)	650, 666
SmiMI	CAYNNNNRTG	1 cut(s)	661
SmlI	CTYRAG	2 cut(s)	55, 391
SmoI	CTYRAG	2 cut(s)	55, 391
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	3 cut(s)	310, 626, 634
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	4 cut(s)	507, 513, 528, 578
TaaI	ACNGT	2 cut(s)	102, 254
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	2 cut(s)	157, 241
TasI	AATT	3 cut(s)	310, 626, 634
TatI	WGTACW	2 cut(s)	485, 515
TfiI	GAWTC	3 cut(s)	154, 374, 437
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	3 cut(s)	105, 215, 236
TspDTI	ATGAA	6 cut(s)	86, 246, 371, 429, 599, 639
TspRI	CASTG	1 cut(s)	105
VpaK11BI	GGWCC	2 cut(s)	650, 666
VspI	ATTAAT	1 cut(s)	443
XapI	RAATTY	2 cut(s)	310, 626
XspI	CTAG	4 cut(s)	507, 513, 528, 578
ZrmI	AGTACT	2 cut(s)	487, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.