FvH4_6g01400

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003740
Physical Location & Seq
Reverse (-)
778696 .. 779238
543 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01400.t1

Sequence Viewer

Length: 543 bp
ATGGGAAGGTCGAGGAAGGGCTGCATGAAAGGGAAGGGAGGCCCTGAGAACGCTACGTGCACTTTCAGAGGAGTGAGGCAGAGAACTTGGGGCAAATGGGTGGCGGAAATACGCGAACCCAAACGTGGTGCTAGGCTCTGGCTAGGCACTTTCAACACTTCCACGGAGGCAGCGCTGGCTTATGACGACGCCGCCCGAAAGCTCTACGGCTCCTCCGCCAAGCTCAATTTGCCCGACCAATCATCCTCCTCCGCCTCCACGTCTTCGAAAACGAGTTCAGGTTCAAGTTCTAATGATAAAGGCGGTGGTGGAGAGCACAACAATATCAAGCAAGAAGCTTATAATTCATGTGATGATGTGCATCGAGGTTGGAATAATGATTATAATAATGGAGAGATAAGTGATTATTGCTTGTGGGAGAGTAATCCTGTGCTGAGTGCAGACTGGTCTGGGGTTTGTGGGGAGAGGGAGTTCTTAGAGATGAATGATATAGGAGTTATGATGGGTGGAAATGAATTTGTAAGTTGTAATATGCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

181

Amino Acids

19.63

Weight (kDa)

6.14

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 22 - 70 5.2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 342, 384
AccII CGCG 1 cut(s) 114
AciI CCGC 5 cut(s) 104, 192, 216, 252, 303
AcsI RAATTY 1 cut(s) 515
AcyI GRCGYC 1 cut(s) 189
AfeI AGCGCT 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 154, 285
AjiI CACGTC 1 cut(s) 261
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 3 cut(s) 202, 223, 338
AluI AGCT 3 cut(s) 202, 223, 338
Alw21I GWGCWC 2 cut(s) 62, 318
Alw44I GTGCAC 1 cut(s) 58
Aor51HI AGCGCT 1 cut(s) 174
AoxI GGCC 1 cut(s) 40
ApaLI GTGCAC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 21, 170
ApoI RAATTY 1 cut(s) 515
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 41
AsuII TTCGAA 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 62, 318
BbvI GCAGC 2 cut(s) 8, 182
BccI CCATC 1 cut(s) 496
BceAI ACGGC 1 cut(s) 223
BfaI CTAG 2 cut(s) 132, 143
BfoI RGCGCY 1 cut(s) 176
BisI GCNGC 3 cut(s) 22, 171, 192
BlsI GCNGC 3 cut(s) 23, 172, 193
BmgBI CACGTC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 57
BsaBI GATNNNNATC 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 162
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 455, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 449
Bse8I GATNNNNATC 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 242
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 2 cut(s) 36, 425
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 3 cut(s) 84, 202, 238
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 2 cut(s) 8, 182
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 62, 318
BslI CCNNNNNNNGG 1 cut(s) 125
BsnI GGCC 1 cut(s) 42
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 62, 318
BspACI CCGC 5 cut(s) 104, 192, 216, 252, 303
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 37, 426
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 266
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 162
BssNI GRCGYC 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 189
BstBAI YACGTR 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 3 cut(s) 45, 434, 475
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 242
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 176, 229
BstSLI GKGCMC 1 cut(s) 62
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 8, 182
BstV2I GAAGAC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 261
BtsCI GGATG 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 177
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 1 cut(s) 197
CviAII CATG 2 cut(s) 25, 348
CviJI RGCY 9 cut(s) 21, 42, 136, 142, 179, 202, 210, 223, 338
CviKI_1 RGCY 9 cut(s) 21, 42, 136, 142, 179, 202, 210, 223, 338
DdeI CTNAG 3 cut(s) 45, 434, 475
EciI GGCGGA 3 cut(s) 119, 205, 241
Eco47III AGCGCT 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 41
FaeI CATG 2 cut(s) 28, 351
FaiI YATR 8 cut(s) 26, 183, 342, 349, 384, 491, 500, 533
FatI CATG 2 cut(s) 24, 347
Fnu4HI GCNGC 3 cut(s) 22, 171, 192
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 3 cut(s) 22, 171, 192
FspBI CTAG 2 cut(s) 132, 143
GlaI GCGC 1 cut(s) 174
GluI GCNGC 3 cut(s) 22, 171, 192
HaeII RGCGCY 1 cut(s) 176
HaeIII GGCC 1 cut(s) 42
HgaI GACGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 2 cut(s) 28, 351
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 336
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 60
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 10, 28
HpyCH4IV ACGT 3 cut(s) 56, 124, 260
HpyCH4V TGCA 4 cut(s) 24, 60, 361, 440
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 229
HpyF3I CTNAG 3 cut(s) 45, 434, 475
HpySE526I ACGT 3 cut(s) 56, 124, 260
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 2 cut(s) 28, 351
HspAI GCGC 1 cut(s) 173
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 7 cut(s) 57, 124, 161, 264, 430, 435, 441
Lsp1109I GCAGC 2 cut(s) 8, 182
LweI GCATC 1 cut(s) 370
MaeI CTAG 2 cut(s) 132, 143
MaeII ACGT 3 cut(s) 56, 124, 260
MboII GAAGA 1 cut(s) 255
MhlI GDGCHC 2 cut(s) 62, 318
MluCI AATT 3 cut(s) 226, 343, 515
MmeI TCCRAC 1 cut(s) 350
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 176, 229
NlaIII CATG 2 cut(s) 28, 351
NlaIV GGNNCC 1 cut(s) 211
NspV TTCGAA 1 cut(s) 266
PkrI GCNGC 3 cut(s) 23, 172, 193
Ppu21I YACGTR 1 cut(s) 57
PsiI TTATAA 2 cut(s) 342, 384
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 41
SatI GCNGC 3 cut(s) 22, 171, 192
Sau96I GGNCC 1 cut(s) 41
SduI GDGCHC 2 cut(s) 62, 318
SetI ASST 9 cut(s) 11, 59, 127, 204, 225, 263, 283, 340, 370
SfaNI GCATC 1 cut(s) 370
SfuI TTCGAA 1 cut(s) 266
Sse9I AATT 3 cut(s) 226, 343, 515
SsiI CCGC 5 cut(s) 104, 192, 216, 252, 303
SspMI CTAG 2 cut(s) 132, 143
TaiI ACGT 3 cut(s) 59, 127, 263
TaqI TCGA 3 cut(s) 11, 266, 364
TasI AATT 3 cut(s) 226, 343, 515
TauI GCSGC 1 cut(s) 194
TseI GCWGC 2 cut(s) 21, 170
TspDTI ATGAA 4 cut(s) 41, 336, 497, 528
TspGWI ACGGA 1 cut(s) 179
VneI GTGCAC 1 cut(s) 58
XapI RAATTY 1 cut(s) 515
XspI CTAG 2 cut(s) 132, 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.