Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

1669436 .. 1670227

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1022600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTTGAAGTCGGAGATGAATGGTGGTGGTAGTACCAGTGTTGTGGTTGAGGAAAGGAAGCCGTCGAAGTGGCCGGCGCAGGCGAGCTCGAGGAAGGGTTGCATGAGGGGGAAGGGAGGGCCGGAGAATGCTATGTGCACTTACAAGGGTGTCAGACAAAGGACGTGGGGAAAATGGGTGGCGGAAATCCGTGAGCCGAACCGTGGGGCCCGGCTCTGGCTCGGGACTTTCGACACCTCCGATGAAGCAGCTCTGGCTTATGACGTTGCGGCCCGAAAGCTCTACGGTTCAGTGGCAAAGCTCAATTTGCCAGAGCAGCGAGTCCCTCATTGTCACCAGCATCATTTGAATCAGCATCTGCAGAATCAAGTCGTTCCCTCGCCGGCCAATCCCGGCGTGCTACCTCAAATTCCGAACCAAACCCTTGTGCAGAACAATCCATCAGGTACTGGGACTAATCCTGCAGGTTATGCTGCTCCTGTGAACGATATTGCGGTACCTTTTATTGGCGATAATTTTCTGACTGTGAAGGCGGATCAGCCCCATGGAAATTGGGCTGTGGCCCTCCCGGAGCAGGGCGGCACGGAAGTGGGGGAGAATATGAGTAGTGGTGGGAATAATGAAATGGAGGGGATACTCTGGGGGAACACAAGCGGGAACTTTCCGGTGTTTGATGACTCGATATGGACGGAGGCCACCATGTCGCTTGATCTTCCGGCGGTGGAAGATTATGGTGTTTTCGGTGGCGGTTTCGTCGATGGAACTGGCTGGGAAACAATGCATTCGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

264

Amino Acids

28.36

Weight (kDa)

5.49

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	48 - 96	4.6e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	455
Acc65I	GGTACC	1 cut(s)	496
AccB1I	GGYRCC	1 cut(s)	496
AciI	CCGC	8 cut(s)	182, 269, 494, 533, 579, 654, 719, 747
AclWI	GGATC	1 cut(s)	543
AcoI	YGGCCR	2 cut(s)	71, 384
AcsI	RAATTY	1 cut(s)	408
AfaI	GTAC	3 cut(s)	34, 448, 498
AfiI	CCNNNNNNNGG	5 cut(s)	203, 216, 506, 574, 575
AgsI	TTSAA	2 cut(s)	7, 349
AjiI	CACGTC	1 cut(s)	165
AleI	CACNNNNGTG	1 cut(s)	587
AluBI	AGCT	4 cut(s)	87, 251, 280, 301
AluI	AGCT	4 cut(s)	87, 251, 280, 301
Alw21I	GWGCWC	2 cut(s)	89, 140
Alw44I	GTGCAC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	543
AlwNI	CAGNNNCTG	2 cut(s)	358, 449
Ama87I	CYCGRG	2 cut(s)	88, 221
AoxI	GGCC	7 cut(s)	71, 119, 207, 270, 384, 561, 693
ApaI	GGGCCC	1 cut(s)	211
ApaLI	GTGCAC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	248, 316, 473
ApoI	RAATTY	1 cut(s)	408
Asp718I	GGTACC	1 cut(s)	496
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	5 cut(s)	119, 207, 208, 271, 562
AsuC2I	CCSGG	3 cut(s)	211, 393, 569
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	2 cut(s)	88, 221
BaeGI	GKGCMC	2 cut(s)	140, 211
BanI	GGYRCC	1 cut(s)	496
BanII	GRGCYC	2 cut(s)	89, 211
Bbv12I	GWGCWC	2 cut(s)	89, 140
BbvI	GCAGC	3 cut(s)	260, 328, 460
BccI	CCATC	2 cut(s)	448, 752
BceAI	ACGGC	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	627
BcnI	CCSGG	3 cut(s)	211, 393, 569
BfmI	CTRYAG	2 cut(s)	359, 462
BfuAI	ACCTGC	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	627
BisI	GCNGC	5 cut(s)	249, 270, 317, 474, 580
BlsI	GCNGC	5 cut(s)	250, 271, 318, 475, 581
Bme1390I	CCNGG	3 cut(s)	211, 393, 569
BmeT110I	CYCGRG	2 cut(s)	88, 221
BmgBI	CACGTC	1 cut(s)	165
BmgT120I	GGNCC	5 cut(s)	119, 207, 208, 271, 562
BmiI	GGNNCC	3 cut(s)	208, 209, 498
BmrFI	CCNGG	3 cut(s)	211, 393, 569
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	349, 364
BmuI	ACTGGG	1 cut(s)	459
BpuMI	CCSGG	3 cut(s)	211, 393, 569
BsaJI	CCNNGG	2 cut(s)	202, 544
BsaWI	WCCGGW	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	5 cut(s)	203, 216, 506, 574, 575
Bse118I	RCCGGY	2 cut(s)	73, 382
Bse1I	ACTGG	3 cut(s)	36, 454, 769
BseDI	CCNNGG	2 cut(s)	202, 544
BseLI	CCNNNNNNNGG	5 cut(s)	203, 216, 506, 574, 575
BseNI	ACTGG	3 cut(s)	36, 454, 769
BseSI	GKGCMC	2 cut(s)	140, 211
BseXI	GCAGC	3 cut(s)	260, 328, 460
BseYI	CCCAGC	1 cut(s)	768
BsgI	GTGCAG	1 cut(s)	449
BshFI	GGCC	7 cut(s)	73, 121, 209, 272, 386, 563, 695
BshNI	GGYRCC	1 cut(s)	496
BsiHKAI	GWGCWC	2 cut(s)	89, 140
BsiHKCI	CYCGRG	2 cut(s)	88, 221
BsiSI	CCGG	8 cut(s)	74, 122, 211, 383, 393, 569, 665, 716
BslFI	GGGAC	3 cut(s)	238, 308, 466
BslI	CCNNNNNNNGG	5 cut(s)	203, 216, 506, 574, 575
BsmFI	GGGAC	3 cut(s)	238, 308, 466
BsmI	GAATGC	2 cut(s)	133, 781
BsnI	GGCC	7 cut(s)	73, 121, 209, 272, 386, 563, 695
BsoBI	CYCGRG	2 cut(s)	88, 221
Bsp120I	GGGCCC	1 cut(s)	207
Bsp1286I	GDGCHC	3 cut(s)	89, 140, 211
Bsp143I	GATC	2 cut(s)	535, 709
Bsp19I	CCATGG	1 cut(s)	544
BspACI	CCGC	8 cut(s)	182, 269, 494, 533, 579, 654, 719, 747
BspANI	GGCC	7 cut(s)	73, 121, 209, 272, 386, 563, 695
BspLI	GGNNCC	3 cut(s)	208, 209, 498
BspMAI	CTGCAG	2 cut(s)	363, 466
BspMI	ACCTGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	543
BspT107I	GGYRCC	1 cut(s)	496
BsrFI	RCCGGY	2 cut(s)	73, 382
BsrI	ACTGG	3 cut(s)	36, 454, 769
BssAI	RCCGGY	2 cut(s)	73, 382
BssECI	CCNNGG	2 cut(s)	202, 544
BssMI	GATC	2 cut(s)	535, 709
BssT1I	CCWWGG	1 cut(s)	544
Bst4CI	ACNGT	3 cut(s)	203, 287, 526
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstC8I	GCNNGC	5 cut(s)	75, 81, 85, 384, 398
BstDSI	CCRYGG	2 cut(s)	202, 544
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	2 cut(s)	538, 712
BstMBI	GATC	2 cut(s)	535, 709
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 307, 316, 470
BstSCI	CCNGG	3 cut(s)	209, 391, 567
BstSFI	CTRYAG	2 cut(s)	359, 462
BstSLI	GKGCMC	2 cut(s)	140, 211
BstV1I	GCAGC	3 cut(s)	260, 328, 460
BstXI	CCANNNNNNTGG	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	627
BsuRI	GGCC	7 cut(s)	73, 121, 209, 272, 386, 563, 695
BtgI	CCRYGG	2 cut(s)	202, 544
BtrI	CACGTC	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	43, 297
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	5 cut(s)	75, 81, 85, 384, 398
CaiI	CAGNNNCTG	2 cut(s)	358, 449
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	2 cut(s)	73, 382
Cfr13I	GGNCC	5 cut(s)	119, 207, 208, 271, 562
Csp6I	GTAC	3 cut(s)	33, 447, 497
CspCI	CAANNNNNGTGG	2 cut(s)	146, 181
CviAII	CATG	3 cut(s)	103, 545, 700
CviQI	GTAC	3 cut(s)	33, 447, 497
DpnI	GATC	2 cut(s)	537, 711
DpnII	GATC	2 cut(s)	535, 709
EaeI	YGGCCR	2 cut(s)	71, 384
EciI	GGCGGA	2 cut(s)	197, 548
Ecl136II	GAGCTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	544
Eco24I	GRGCYC	2 cut(s)	89, 211
Eco53kI	GAGCTC	1 cut(s)	87
Eco88I	CYCGRG	2 cut(s)	88, 221
EcoICRI	GAGCTC	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	544
EcoT22I	ATGCAT	1 cut(s)	783
EcoT38I	GRGCYC	2 cut(s)	89, 211
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	3 cut(s)	106, 548, 703
FaiI	YATR	9 cut(s)	104, 134, 261, 471, 546, 602, 685, 701, 732
FaqI	GGGAC	3 cut(s)	238, 308, 466
FatI	CATG	3 cut(s)	102, 544, 699
FauI	CCCGC	1 cut(s)	647
Fnu4HI	GCNGC	5 cut(s)	249, 270, 317, 474, 580
FriOI	GRGCYC	2 cut(s)	89, 211
Fsp4HI	GCNGC	5 cut(s)	249, 270, 317, 474, 580
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	5 cut(s)	249, 270, 317, 474, 580
GsaI	CCCAGC	1 cut(s)	772
HaeIII	GGCC	7 cut(s)	73, 121, 209, 272, 386, 563, 695
HapII	CCGG	8 cut(s)	74, 122, 211, 383, 393, 569, 665, 716
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	106, 548, 703
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	4 cut(s)	321, 349, 364, 677
HpaII	CCGG	8 cut(s)	74, 122, 211, 383, 393, 569, 665, 716
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	138, 484
Hpy188I	TCNGA	5 cut(s)	13, 155, 241, 414, 522
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	138, 484
Hpy99I	CGWCG	2 cut(s)	67, 758
HpyAV	CCTTC	3 cut(s)	88, 106, 523
HpyCH4III	ACNGT	3 cut(s)	203, 287, 526
HpyCH4IV	ACGT	2 cut(s)	164, 264
HpyCH4V	TGCA	6 cut(s)	102, 138, 361, 430, 464, 781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 307, 316, 470
HpySE526I	ACGT	2 cut(s)	164, 264
Hsp92II	CATG	3 cut(s)	106, 548, 703
HspAI	GCGC	1 cut(s)	77
KpnI	GGTACC	1 cut(s)	500
KroI	GCCGGC	2 cut(s)	73, 382
KroNI	GCCGGC	2 cut(s)	75, 384
Kzo9I	GATC	2 cut(s)	535, 709
LmnI	GCTCC	2 cut(s)	481, 571
Lsp1109I	GCAGC	3 cut(s)	260, 328, 460
LweI	GCATC	2 cut(s)	349, 364
MaeII	ACGT	2 cut(s)	164, 264
MaeIII	GTNAC	1 cut(s)	332
MalI	GATC	2 cut(s)	537, 711
MboI	GATC	2 cut(s)	535, 709
MboII	GAAGA	2 cut(s)	704, 737
MhlI	GDGCHC	3 cut(s)	89, 140, 211
MluCI	AATT	4 cut(s)	304, 408, 514, 550
MlyI	GAGTC	2 cut(s)	330, 671
Mph1103I	ATGCAT	1 cut(s)	783
MroNI	GCCGGC	2 cut(s)	73, 382
MseI	TTAA	1 cut(s)	790
MslI	CAYNNNNRTG	1 cut(s)	587
MspI	CCGG	8 cut(s)	74, 122, 211, 383, 393, 569, 665, 716
MspR9I	CCNGG	3 cut(s)	211, 393, 569
Mva1269I	GAATGC	2 cut(s)	133, 781
MwoI	GCNNNNNNNGC	4 cut(s)	254, 307, 316, 470
NaeI	GCCGGC	2 cut(s)	75, 384
NciI	CCSGG	3 cut(s)	211, 393, 569
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	2 cut(s)	535, 709
NgoMIV	GCCGGC	2 cut(s)	73, 382
NlaIII	CATG	3 cut(s)	106, 548, 703
NlaIV	GGNNCC	3 cut(s)	208, 209, 498
NmuCI	GTSAC	1 cut(s)	332
NsiI	ATGCAT	1 cut(s)	783
OliI	CACNNNNGTG	1 cut(s)	587
PaeR7I	CTCGAG	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	2 cut(s)	228, 237
PctI	GAATGC	2 cut(s)	133, 781
PdiI	GCCGGC	2 cut(s)	75, 384
PfeI	GAWTC	2 cut(s)	349, 364
PfoI	TCCNGGA	1 cut(s)	567
PkrI	GCNGC	5 cut(s)	250, 271, 318, 475, 581
PleI	GAGTC	2 cut(s)	329, 671
PpsI	GAGTC	2 cut(s)	329, 671
Psp124BI	GAGCTC	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	768
PspN4I	GGNNCC	3 cut(s)	208, 209, 498
PspOMI	GGGCCC	1 cut(s)	207
PspPI	GGNCC	5 cut(s)	119, 207, 208, 271, 562
PspXI	VCTCGAGB	1 cut(s)	88
PstI	CTGCAG	2 cut(s)	363, 466
PstNI	CAGNNNCTG	2 cut(s)	358, 449
RsaI	GTAC	3 cut(s)	34, 448, 498
RsaNI	GTAC	3 cut(s)	33, 447, 497
RseI	CAYNNNNRTG	1 cut(s)	587
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	790
SatI	GCNGC	5 cut(s)	249, 270, 317, 474, 580
Sau3AI	GATC	2 cut(s)	535, 709
Sau96I	GGNCC	5 cut(s)	119, 207, 208, 271, 562
SbfI	CCTGCAGG	1 cut(s)	466
SchI	GAGTC	2 cut(s)	330, 671
ScrFI	CCNGG	3 cut(s)	211, 393, 569
SdaI	CCTGCAGG	1 cut(s)	466
SduI	GDGCHC	3 cut(s)	89, 140, 211
SfaNI	GCATC	2 cut(s)	349, 364
SfcI	CTRYAG	2 cut(s)	359, 462
Sfr274I	CTCGAG	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	587
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse8387I	CCTGCAGG	1 cut(s)	466
Sse9I	AATT	4 cut(s)	304, 408, 514, 550
SsiI	CCGC	8 cut(s)	182, 269, 494, 533, 579, 654, 719, 747
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	209, 391, 567
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	3 cut(s)	203, 287, 526
TaiI	ACGT	2 cut(s)	167, 267
TaqI	TCGA	5 cut(s)	65, 89, 231, 680, 756
TasI	AATT	4 cut(s)	304, 408, 514, 550
TauI	GCSGC	2 cut(s)	272, 582
TfiI	GAWTC	2 cut(s)	349, 364
Tru1I	TTAA	1 cut(s)	790
Tru9I	TTAA	1 cut(s)	790
TscAI	CASTG	2 cut(s)	43, 297
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	3 cut(s)	248, 316, 473
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	32, 258, 636
TspGWI	ACGGA	3 cut(s)	179, 599, 704
TspRI	CASTG	2 cut(s)	43, 297
VneI	GTGCAC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	408
XhoI	CTCGAG	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.