Rh3CG015100

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003740
Physical Location & Seq
Reverse (-)
1008839 .. 1009878
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG015100.1

Sequence Viewer

Length: 684 bp
ATGTCCACTTCCCACTTCTCTCCCAACTATTTAAGTATTACTTTGCCTTATCCCATCCCTGTATGTCGTCCCAGATTTCCCAAAACCTACTTACTAAGGCCGTGTTTCGGTGAGACCATGGACAATGACCAAGAGAGAAAGGTGATGAAGAAAGCCAACATGGGAAGGTCGAGAAAGGGCTGCATGAAAGGGAAGGGAGGCCCTGAGAACGCTACGTGCACTTTCAGAGGAGTCAGGCAAAGAACTTGGGGCAAATGGGTGGCGGAAATACGCGAGCCCAAACGAGGTGCTAGGCTCTGGCTAGGCACTTTCAACACTTCCACAGAGGCAGCGCTGGCTTATGACGATGCGGCAAGAAAGCTGTACGGCTCCTCCGCCAAGCTCAACTTGCCGGACCACTCCTCCTCCTCCTCCACATCACCGTCTTCGAAAAAGAGTTCTGCTGATAAAGGTTGTGGTGAACACAAGCATGAAGCTTATTCAGGTGATATGTATGGAGGTTGGAGTAGTAATAATGGAGAGAATGATTGCTTGTGGGAGAGTAATCCTGTGTTGAGGGTTGATTGGTCTGGAGTTTGTGAGGAGAGGGAATTCTTAGAGCTGAATGATATAGGAATTATGATGGGTGGAAATGGCTTTGTAAGTTGGGAGGCTTCTTTGGAAGAAGCTCCATGGAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

227

Amino Acids

25.3

Weight (kDa)

8.43

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 75 - 123 7.9e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 263, 350, 375
AcsI RAATTY 1 cut(s) 590
AfaI GTAC 1 cut(s) 365
AfeI AGCGCT 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 107, 284
AgsI TTSAA 1 cut(s) 313
AluBI AGCT 6 cut(s) 361, 382, 476, 601, 668, 678
AluI AGCT 6 cut(s) 361, 382, 476, 601, 668, 678
Alw21I GWGCWC 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 107
Alw44I GTGCAC 1 cut(s) 217
Aor51HI AGCGCT 1 cut(s) 333
AoxI GGCC 2 cut(s) 98, 199
ApaLI GTGCAC 1 cut(s) 217
ApeKI GCWGC 2 cut(s) 180, 329
ApoI RAATTY 1 cut(s) 590
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 200, 394
AsuHPI GGTGA 5 cut(s) 122, 154, 411, 470, 497
AsuII TTCGAA 1 cut(s) 428
AvaII GGWCC 1 cut(s) 394
BaeGI GKGCMC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 221
BbvI GCAGC 2 cut(s) 167, 341
BccI CCATC 2 cut(s) 62, 616
BceAI ACGGC 2 cut(s) 85, 382
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 2 cut(s) 291, 302
BfoI RGCGCY 1 cut(s) 335
BisI GCNGC 3 cut(s) 181, 330, 351
BlsI GCNGC 3 cut(s) 182, 331, 352
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 200, 394
BmiI GGNNCC 1 cut(s) 370
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 1 cut(s) 591
Bpu14I TTCGAA 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 117, 671
BsaXI ACNNNNNCTCC 6 cut(s) 356, 386, 386, 389, 416, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 284
BseDI CCNNGG 2 cut(s) 117, 671
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 107, 284
BseMII CTCAG 1 cut(s) 195
BseRI GAGGAG 7 cut(s) 243, 361, 391, 394, 397, 400, 596
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 167, 341
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 100, 201
BsiHKAI GWGCWC 1 cut(s) 221
BsiSI CCGG 1 cut(s) 392
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 107, 284
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 2 cut(s) 100, 201
Bso31I GGTCTC 1 cut(s) 107
Bsp119I TTCGAA 1 cut(s) 428
Bsp1286I GDGCHC 2 cut(s) 221, 279
Bsp19I CCATGG 2 cut(s) 117, 671
BspACI CCGC 3 cut(s) 263, 350, 375
BspANI GGCC 2 cut(s) 100, 201
BspCNI CTCAG 1 cut(s) 196
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 370
BspT104I TTCGAA 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 117, 671
BssT1I CCWWGG 2 cut(s) 117, 671
Bst4CI ACNGT 1 cut(s) 423
BstBAI YACGTR 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 275, 336
BstDEI CTNAG 3 cut(s) 95, 204, 595
BstDSI CCRYGG 2 cut(s) 117, 671
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 273
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstMAI GTCTC 1 cut(s) 107
BstMWI GCNNNNNNNGC 2 cut(s) 335, 388
BstSLI GKGCMC 1 cut(s) 221
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 167, 341
BstV2I GAAGAC 1 cut(s) 417
BsuRI GGCC 2 cut(s) 100, 201
BtgI CCRYGG 2 cut(s) 117, 671
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 275, 336
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 200, 394
Csp6I GTAC 1 cut(s) 364
CviAII CATG 5 cut(s) 118, 160, 184, 470, 672
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 3 cut(s) 95, 204, 595
EciI GGCGGA 2 cut(s) 278, 364
Eco130I CCWWGG 2 cut(s) 117, 671
Eco24I GRGCYC 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 394
Eco47III AGCGCT 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 590
EcoT14I CCWWGG 2 cut(s) 117, 671
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 117, 671
FaeI CATG 5 cut(s) 121, 163, 187, 473, 675
FalI AAGNNNNNCTT 4 cut(s) 25, 57, 371, 403
FaqI GGGAC 1 cut(s) 54
FatI CATG 5 cut(s) 117, 159, 183, 469, 671
Fnu4HI GCNGC 3 cut(s) 181, 330, 351
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 3 cut(s) 181, 330, 351
FspBI CTAG 2 cut(s) 291, 302
GlaI GCGC 1 cut(s) 333
GluI GCNGC 3 cut(s) 181, 330, 351
GsuI CTGGAG 1 cut(s) 591
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 2 cut(s) 100, 201
HapII CCGG 1 cut(s) 392
HhaI GCGC 1 cut(s) 334
Hin1II CATG 5 cut(s) 121, 163, 187, 473, 675
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 392
HphI GGTGA 5 cut(s) 122, 154, 411, 470, 497
Hpy166II GTNNAC 3 cut(s) 6, 219, 461
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 2 cut(s) 171, 570
Hpy8I GTNNAC 3 cut(s) 6, 219, 461
HpyAV CCTTC 2 cut(s) 159, 187
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 183, 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 388
HpyF3I CTNAG 3 cut(s) 95, 204, 595
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 5 cut(s) 121, 163, 187, 473, 675
HspAI GCGC 1 cut(s) 332
LmnI GCTCC 3 cut(s) 374, 673, 675
Lsp1109I GCAGC 2 cut(s) 167, 341
LweI GCATC 1 cut(s) 337
MaeI CTAG 2 cut(s) 291, 302
MaeII ACGT 1 cut(s) 215
MboII GAAGA 3 cut(s) 160, 417, 674
MhlI GDGCHC 2 cut(s) 221, 279
MluCI AATT 2 cut(s) 590, 615
MlyI GAGTC 1 cut(s) 240
MmeI TCCRAC 1 cut(s) 482
MseI TTAA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 468
MspI CCGG 1 cut(s) 392
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 335, 388
NcoI CCATGG 2 cut(s) 117, 671
NlaIII CATG 5 cut(s) 121, 163, 187, 473, 675
NlaIV GGNNCC 1 cut(s) 370
NspV TTCGAA 1 cut(s) 428
PkrI GCNGC 3 cut(s) 182, 331, 352
PleI GAGTC 1 cut(s) 239
PpsI GAGTC 1 cut(s) 239
Ppu21I YACGTR 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 2 cut(s) 200, 394
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 3 cut(s) 181, 330, 351
Sau96I GGNCC 2 cut(s) 200, 394
SchI GAGTC 1 cut(s) 240
SduI GDGCHC 2 cut(s) 221, 279
SfaNI GCATC 1 cut(s) 337
SfuI TTCGAA 1 cut(s) 428
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 468
Sse9I AATT 2 cut(s) 590, 615
SsiI CCGC 3 cut(s) 263, 350, 375
SspMI CTAG 2 cut(s) 291, 302
StyI CCWWGG 2 cut(s) 117, 671
TaaI ACNGT 1 cut(s) 423
TaiI ACGT 1 cut(s) 218
TaqI TCGA 2 cut(s) 170, 428
TasI AATT 2 cut(s) 590, 615
TauI GCSGC 1 cut(s) 353
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 2 cut(s) 180, 329
TspDTI ATGAA 3 cut(s) 161, 200, 486
VneI GTGCAC 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 1 cut(s) 590
XspI CTAG 2 cut(s) 291, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.