Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Forward (+)

61609575 .. 61610348

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG423300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTTGAAATCCAGGATAGGTAGCAGTGTTGGGGTTGGGGAGAGGAAAACGGTGAAGAAGCCGGCGCAGGCCAGCTCGAGGAAGGGGTGTATGAGAGGGAAAGGTGGGCCGGAAAATGCTACGTGCACTTACAAGGGTGTTAGGCAGAGGACTTGGGGGAAATGGGTGGCCGAGATCCGCGAACCTAATCGCGGAGCTCGTCTCTGGCTTGGGACGTTCGACACGTCCCATGAGGCCGCCATGGCCTATGATGCTGCTGCCAGGAAGCTCTATGGCTCCGAGGCCAAGCTCAATTTGCCCGATCAACTTGTACCCCATTCTCCACAGCCTCCTGTGCAGAACAATAATCTCCAGATGGCTCAGATGCAGATGGCGAATACATCATCTGGTGCTGCATGTTTTCCAACGGTGATAGGAGTACTGAACAATGATGTTTCCGTACCGGTTGTGCTCCAGGACAATACTAATAGTACCTACCCGGTTCCGATTCCTTTTCCTAATCCGAGCATGCAAACCTGCTATGGTAACACATACGAGGAGAACAACAGCAACACCACTATGTCTATGGACACAAAAGAGGAGAAGAACGAAGGAATTTATCAAGGGTTCTGGGAGAATGTAAATACAAAAGTGTTGCCGGTGTTTGATGACTCCATATGGGCCGAGGCTGCCATGTCCATCGATTTTCCGGTGATCGAGAATCACGGGATTTTCGCCAGCAACTTCGTTGATGGAAATCCTTGGGAGGCATTACCTGCTTCTTGGTGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

257

Amino Acids

28.21

Weight (kDa)

5.97

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	44 - 92	2.2e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	524, 763
AccII	CGCG	2 cut(s)	180, 192
AciI	CCGC	3 cut(s)	178, 192, 237
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	594
AfaI	GTAC	4 cut(s)	312, 420, 441, 472
AfiI	CCNNNNNNNGG	2 cut(s)	78, 191
AflIII	ACRYGT	1 cut(s)	222
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	1 cut(s)	7
AjiI	CACGTC	1 cut(s)	225
AjnI	CCWGG	3 cut(s)	11, 260, 453
AluBI	AGCT	4 cut(s)	75, 197, 268, 289
AluI	AGCT	4 cut(s)	75, 197, 268, 289
Alw21I	GWGCWC	3 cut(s)	128, 199, 453
Alw26I	GTCTC	1 cut(s)	206
Alw44I	GTGCAC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	7 cut(s)	69, 107, 168, 234, 243, 282, 660
ApaLI	GTGCAC	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	254, 257, 392, 668
ApoI	RAATTY	1 cut(s)	594
AsiGI	ACCGGT	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	67, 770
AspS9I	GGNCC	2 cut(s)	107, 660
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	3 cut(s)	64, 421, 703
AvaI	CYCGRG	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	199
Bbv12I	GWGCWC	3 cut(s)	128, 199, 453
BbvI	GCAGC	4 cut(s)	241, 244, 379, 655
BccI	CCATC	4 cut(s)	349, 364, 686, 725
BciT130I	CCWGG	3 cut(s)	13, 262, 455
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	206
BfuAI	ACCTGC	2 cut(s)	524, 763
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	5 cut(s)	237, 255, 258, 393, 669
BlsI	GCNGC	5 cut(s)	238, 256, 259, 394, 670
BmcAI	AGTACT	1 cut(s)	420
Bme1390I	CCNGG	4 cut(s)	13, 262, 455, 479
BmeT110I	CYCGRG	1 cut(s)	76
BmgBI	CACGTC	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	107, 660
BmiI	GGNNCC	2 cut(s)	277, 483
BmrFI	CCNGG	4 cut(s)	13, 262, 455, 479
BmsI	GCATC	2 cut(s)	241, 354
BplI	GAGNNNNNCTC	2 cut(s)	186, 218
BpmI	CTGGAG	2 cut(s)	335, 437
BpuMI	CCSGG	1 cut(s)	479
Bsa29I	ATCGAT	1 cut(s)	681
BsaAI	YACGTR	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	735
BsaJI	CCNNGG	4 cut(s)	240, 279, 663, 740
BsaWI	WCCGGW	2 cut(s)	442, 688
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 191
Bse118I	RCCGGY	3 cut(s)	61, 442, 637
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	3 cut(s)	13, 262, 455
BseCI	ATCGAT	1 cut(s)	681
BseDI	CCNNGG	4 cut(s)	240, 279, 663, 740
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	2 cut(s)	78, 191
BseMII	CTCAG	1 cut(s)	374
BseRI	GAGGAG	2 cut(s)	551, 593
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	4 cut(s)	241, 244, 379, 655
BsgI	GTGCAG	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	180, 192
BshFI	GGCC	7 cut(s)	71, 109, 170, 236, 245, 284, 662
BshTI	ACCGGT	1 cut(s)	442
BshVI	ATCGAT	1 cut(s)	681
BsiHKAI	GWGCWC	3 cut(s)	128, 199, 453
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	6 cut(s)	62, 110, 443, 479, 638, 689
BslFI	GGGAC	2 cut(s)	211, 226
BslI	CCNNNNNNNGG	2 cut(s)	78, 191
BsmAI	GTCTC	1 cut(s)	206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	2 cut(s)	211, 226
BsnI	GGCC	7 cut(s)	71, 109, 170, 236, 245, 284, 662
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	3 cut(s)	128, 199, 453
Bsp143I	GATC	3 cut(s)	174, 301, 693
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	3 cut(s)	178, 192, 237
BspANI	GGCC	7 cut(s)	71, 109, 170, 236, 245, 284, 662
BspCNI	CTCAG	1 cut(s)	373
BspDI	ATCGAT	1 cut(s)	681
BspFNI	CGCG	2 cut(s)	180, 192
BspLI	GGNNCC	2 cut(s)	277, 483
BspMI	ACCTGC	2 cut(s)	524, 763
BspPI	GGATC	1 cut(s)	169
BsrFI	RCCGGY	3 cut(s)	61, 442, 637
BssAI	RCCGGY	3 cut(s)	61, 442, 637
BssECI	CCNNGG	4 cut(s)	240, 279, 663, 740
BssMI	GATC	3 cut(s)	174, 301, 693
BssT1I	CCWWGG	2 cut(s)	240, 740
Bst2UI	CCWGG	3 cut(s)	13, 262, 455
Bst4CI	ACNGT	2 cut(s)	52, 409
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstBAI	YACGTR	1 cut(s)	123
BstC8I	GCNNGC	5 cut(s)	63, 69, 73, 509, 718
BstDEI	CTNAG	2 cut(s)	360, 771
BstDSI	CCRYGG	1 cut(s)	240
BstFNI	CGCG	2 cut(s)	180, 192
BstHHI	GCGC	2 cut(s)	67, 770
BstKTI	GATC	3 cut(s)	177, 304, 696
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	174, 301, 693
BstMWI	GCNNNNNNNGC	6 cut(s)	242, 251, 295, 334, 668, 755
BstNI	CCWGG	3 cut(s)	13, 262, 455
BstNSI	RCATGY	2 cut(s)	399, 511
BstSCI	CCNGG	4 cut(s)	11, 260, 453, 477
BstSLI	GKGCMC	1 cut(s)	128
BstUI	CGCG	2 cut(s)	180, 192
BstV1I	GCAGC	4 cut(s)	241, 244, 379, 655
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
Bsu15I	ATCGAT	1 cut(s)	681
BsuRI	GGCC	7 cut(s)	71, 109, 170, 236, 245, 284, 662
BsuTUI	ATCGAT	1 cut(s)	681
BtgI	CCRYGG	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	2 cut(s)	524, 763
Cac8I	GCNNGC	5 cut(s)	63, 69, 73, 509, 718
CfoI	GCGC	2 cut(s)	67, 770
Cfr10I	RCCGGY	3 cut(s)	61, 442, 637
Cfr13I	GGNCC	2 cut(s)	107, 660
ClaI	ATCGAT	1 cut(s)	681
Csp6I	GTAC	4 cut(s)	311, 419, 440, 471
CspAI	ACCGGT	1 cut(s)	442
CviAII	CATG	5 cut(s)	230, 241, 396, 508, 673
CviQI	GTAC	4 cut(s)	311, 419, 440, 471
DdeI	CTNAG	2 cut(s)	360, 771
DpnI	GATC	3 cut(s)	176, 303, 695
DpnII	GATC	3 cut(s)	174, 301, 693
EaeI	YGGCCR	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	240, 740
Eco24I	GRGCYC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	197
EcoRII	CCWGG	3 cut(s)	11, 260, 453
EcoT14I	CCWWGG	2 cut(s)	240, 740
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	240, 740
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	5 cut(s)	233, 244, 399, 511, 676
FaqI	GGGAC	2 cut(s)	211, 226
FatI	CATG	5 cut(s)	229, 240, 395, 507, 672
FauNDI	CATATG	1 cut(s)	656
Fnu4HI	GCNGC	5 cut(s)	237, 255, 258, 393, 669
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	5 cut(s)	237, 255, 258, 393, 669
GlaI	GCGC	2 cut(s)	66, 769
GluI	GCNGC	5 cut(s)	237, 255, 258, 393, 669
GsuI	CTGGAG	2 cut(s)	335, 437
HaeIII	GGCC	7 cut(s)	71, 109, 170, 236, 245, 284, 662
HapII	CCGG	6 cut(s)	62, 110, 443, 479, 638, 689
HhaI	GCGC	2 cut(s)	67, 770
Hin1II	CATG	5 cut(s)	233, 244, 399, 511, 676
Hin6I	GCGC	2 cut(s)	65, 768
HinP1I	GCGC	2 cut(s)	65, 768
HinfI	GANTC	3 cut(s)	487, 650, 700
HpaII	CCGG	6 cut(s)	62, 110, 443, 479, 638, 689
HphI	GGTGA	3 cut(s)	64, 421, 703
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	4 cut(s)	280, 363, 486, 504
Hpy188III	TCNNGA	2 cut(s)	352, 697
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	76, 584
HpyCH4III	ACNGT	2 cut(s)	52, 409
HpyCH4IV	ACGT	3 cut(s)	122, 215, 224
HpyCH4V	TGCA	5 cut(s)	126, 337, 367, 395, 511
HpyF10VI	GCNNNNNNNGC	6 cut(s)	242, 251, 295, 334, 668, 755
HpyF3I	CTNAG	2 cut(s)	360, 771
HpySE526I	ACGT	3 cut(s)	122, 215, 224
Hsp92II	CATG	5 cut(s)	233, 244, 399, 511, 676
HspAI	GCGC	2 cut(s)	65, 768
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	174, 301, 693
LmnI	GCTCC	3 cut(s)	194, 281, 456
Lsp1109I	GCAGC	4 cut(s)	241, 244, 379, 655
LweI	GCATC	2 cut(s)	241, 354
MaeII	ACGT	3 cut(s)	122, 215, 224
MaeIII	GTNAC	1 cut(s)	524
MalI	GATC	3 cut(s)	176, 303, 695
MboI	GATC	3 cut(s)	174, 301, 693
MboII	GAAGA	2 cut(s)	67, 595
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	3 cut(s)	128, 199, 453
MluCI	AATT	2 cut(s)	292, 594
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	1 cut(s)	428
MroNI	GCCGGC	1 cut(s)	61
MslI	CAYNNNNRTG	1 cut(s)	557
MspI	CCGG	6 cut(s)	62, 110, 443, 479, 638, 689
MspR9I	CCNGG	4 cut(s)	13, 262, 455, 479
MvaI	CCWGG	3 cut(s)	13, 262, 455
MvnI	CGCG	2 cut(s)	180, 192
MwoI	GCNNNNNNNGC	6 cut(s)	242, 251, 295, 334, 668, 755
NaeI	GCCGGC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	479
NcoI	CCATGG	1 cut(s)	240
NdeI	CATATG	1 cut(s)	656
NdeII	GATC	3 cut(s)	174, 301, 693
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	5 cut(s)	233, 244, 399, 511, 676
NlaIV	GGNNCC	2 cut(s)	277, 483
NmeAIII	GCCGAG	2 cut(s)	196, 688
NspI	RCATGY	2 cut(s)	399, 511
PaeI	GCATGC	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	2 cut(s)	196, 221
PdiI	GCCGGC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	487, 700
PfoI	TCCNGGA	2 cut(s)	11, 453
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	5 cut(s)	238, 256, 259, 394, 670
PleI	GAGTC	1 cut(s)	644
PpsI	GAGTC	1 cut(s)	644
Ppu21I	YACGTR	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	199
Psp6I	CCWGG	3 cut(s)	11, 260, 453
PspGI	CCWGG	3 cut(s)	11, 260, 453
PspN4I	GGNNCC	2 cut(s)	277, 483
PspPI	GGNCC	2 cut(s)	107, 660
PspXI	VCTCGAGB	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	4 cut(s)	312, 420, 441, 472
RsaNI	GTAC	4 cut(s)	311, 419, 440, 471
RseI	CAYNNNNRTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	199
SatI	GCNGC	5 cut(s)	237, 255, 258, 393, 669
Sau3AI	GATC	3 cut(s)	174, 301, 693
Sau96I	GGNCC	2 cut(s)	107, 660
ScaI	AGTACT	1 cut(s)	420
SchI	GAGTC	1 cut(s)	644
ScrFI	CCNGG	4 cut(s)	13, 262, 455, 479
SduI	GDGCHC	3 cut(s)	128, 199, 453
SfaNI	GCATC	2 cut(s)	241, 354
SfiI	GGCCNNNNNGGCC	1 cut(s)	242
Sfr274I	CTCGAG	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	2 cut(s)	292, 594
SsiI	CCGC	3 cut(s)	178, 192, 237
SstI	GAGCTC	1 cut(s)	199
StyD4I	CCNGG	4 cut(s)	11, 260, 453, 477
StyI	CCWWGG	2 cut(s)	240, 740
TaaI	ACNGT	2 cut(s)	52, 409
TaiI	ACGT	3 cut(s)	125, 218, 227
TaqI	TCGA	4 cut(s)	77, 219, 681, 696
TasI	AATT	2 cut(s)	292, 594
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	487, 700
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	4 cut(s)	254, 257, 392, 668
TspGWI	ACGGA	1 cut(s)	427
TspRI	CASTG	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	124
XapI	RAATTY	1 cut(s)	594
XceI	RCATGY	2 cut(s)	399, 511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XhoI	CTCGAG	1 cut(s)	76
ZrmI	AGTACT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.