Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

3867277 .. 3868109

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGACACGATATCTCCCGTTCACCATGCCAAGTATTCAAACCCTATCTTCCACAAGCCACGTTTCAGTCATGTCTGCCTTCCTCCGTCATATAAGTACCACCACCGTTTCGGGTTATGGTTTCTCAAACTCACCATCCGAATTAAAAATAATAATAATAATAATCACGAAAAAAAATCCTCGATTCTTCTCAAAAAATTCTCACAATCTCGAACTCGGAGATGGTTGCTGGTAGTAGCAGTTATTTCCCTCGTCCGCCAATCCCGGCGTGCCACCTCTAATCCTGCATGTTATGCTGCTCCCGAGAAAGATAATGCAGCACCTGTTATTTGCAATAATTGTGCGAACGTGAAGGTGGATCAGGGGGGCATGAAAGTGGAGGAGAATATGACTAGTGGTGTGAACAATGAAGGAATGGATGGGATATTCTGGGGGGAACATGAGCGAGAGTTTTCCAGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

155

Amino Acids

17.65

Weight (kDa)

9.73

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	39
AhlI	ACTAGT	1 cut(s)	392
AlwI	GGATC	1 cut(s)	366
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	296, 317
ApoI	RAATTY	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	14, 124
AvaI	CYCGRG	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	283, 329
BccI	CCATC	3 cut(s)	143, 216, 413
BcnI	CCSGG	1 cut(s)	265
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	1 cut(s)	393
BisI	GCNGC	2 cut(s)	297, 318
BlsI	GCNGC	2 cut(s)	298, 319
Bme1390I	CCNGG	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	265
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	456
BseGI	GGATG	2 cut(s)	135, 424
BseNI	ACTGG	1 cut(s)	456
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	283, 329
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	302
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	456
BssMI	GATC	1 cut(s)	358
Bst4CI	ACNGT	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	135, 424
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	283, 329
BtsCI	GGATG	2 cut(s)	135, 424
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	5 cut(s)	26, 71, 288, 370, 440
CviJI	RGCY	1 cut(s)	58
CviKI_1	RGCY	1 cut(s)	58
CviQI	GTAC	1 cut(s)	97
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
EciI	GGCGGA	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	302
EcoRV	GATATC	1 cut(s)	12
FaeI	CATG	5 cut(s)	29, 74, 291, 373, 443
FatI	CATG	5 cut(s)	25, 70, 287, 369, 439
Fnu4HI	GCNGC	2 cut(s)	297, 318
FokI	GGATG	2 cut(s)	122, 431
Fsp4HI	GCNGC	2 cut(s)	297, 318
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	2 cut(s)	297, 318
HapII	CCGG	1 cut(s)	265
Hin1II	CATG	5 cut(s)	29, 74, 291, 373, 443
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	2 cut(s)	14, 124
Hpy166II	GTNNAC	2 cut(s)	22, 403
Hpy188I	TCNGA	2 cut(s)	140, 219
Hpy188III	TCNNGA	3 cut(s)	167, 210, 302
Hpy8I	GTNNAC	2 cut(s)	22, 403
HpyAV	CCTTC	3 cut(s)	89, 346, 404
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	2 cut(s)	61, 348
HpyCH4V	TGCA	3 cut(s)	287, 317, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpySE526I	ACGT	2 cut(s)	61, 348
Hsp92II	CATG	5 cut(s)	29, 74, 291, 373, 443
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	6 cut(s)	215, 278, 297, 336, 347, 415
Lsp1109I	GCAGC	2 cut(s)	283, 329
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	2 cut(s)	61, 348
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	40, 179
MluCI	AATT	3 cut(s)	141, 197, 337
MnlI	CCTC	5 cut(s)	93, 190, 260, 286, 373
MseI	TTAA	1 cut(s)	144
MslI	CAYNNNNRTG	1 cut(s)	374
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	5 cut(s)	29, 74, 291, 373, 443
NspI	RCATGY	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	298, 319
PstNI	CAGNNNCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	2 cut(s)	297, 318
Sau3AI	GATC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	265
SetI	ASST	5 cut(s)	64, 278, 325, 351, 357
SmiMI	CAYNNNNRTG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	3 cut(s)	141, 197, 337
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	2 cut(s)	64, 351
TaqI	TCGA	2 cut(s)	182, 211
TasI	AATT	3 cut(s)	141, 197, 337
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	2 cut(s)	296, 317
TspDTI	ATGAA	2 cut(s)	386, 423
TspGWI	ACGGA	1 cut(s)	75
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	1 cut(s)	291
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.