Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Forward (+)

28047790 .. 28050124

Gene Structure 2335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGACACGATCTGTCTTGTTCATCTTGACAAGTATCACTGCAGCCACAGCAGAAGCCACGTTTCAGTATTCTGTATGATGAAAATGTTGAAATCCGGGATGGGTAGCAGTGTTGGGGTAGCGGAGAGGAAAACGATGAAGAAGCCGGCGCAGGCCAGCTCGAGGAAAGGGTGTATGAGAGGAAAAGGAGGGCCAGAAAATGCTATGTGCACTTACAAGGGTGTTAGGCAAAGGACATGGGGGAAATGGGTGGCCGAGATCCGCGAACCTAATCGCGGAGCTCGGCTCTGGCTTGGGACGTTCGACACGTCCAGTGAGGCTGCCATGGCCTATGATGCTGCTGCCAGGAAGCTCTACGGATCCGAGGCCAAGCTCAACTTGCCGGATCAGATTGTACCTCAATTTCCCAACCCTCCTCCTGATCACAACAATAATCTCCACATGGCACCGGTGGTCAGTAATTCATCTTCCAATACTGCTGCATGTTTCCCGCCAGATATTTCGGTACCGATTATGCTCCAGGACCGTACTAACTTCCCGGTTCAGATTCCTTTTCCTAATCCGGGCATGCAAACCTCCTACGGTATCGCATACGAGCAGGCCAACAGCAGCAGCAGCAGCAGCGGAAGCAACACTACCATGCCTATGGACACAAAGAGAGGAGAAGTACGAAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

227

Amino Acids

24.78

Weight (kDa)

9.48

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	72 - 120	4.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	505
AccB1I	GGYRCC	2 cut(s)	445, 505
AccII	CGCG	2 cut(s)	264, 276
AciI	CCGC	5 cut(s)	122, 262, 276, 491, 624
AclWI	GGATC	4 cut(s)	253, 354, 367, 393
AcoI	YGGCCR	1 cut(s)	252
AfaI	GTAC	4 cut(s)	396, 507, 529, 669
AfiI	CCNNNNNNNGG	3 cut(s)	162, 275, 563
AflIII	ACRYGT	1 cut(s)	306
AgeI	ACCGGT	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	309
AjnI	CCWGG	2 cut(s)	344, 519
AluBI	AGCT	4 cut(s)	159, 281, 352, 373
AluI	AGCT	4 cut(s)	159, 281, 352, 373
Alw21I	GWGCWC	2 cut(s)	212, 283
Alw44I	GTGCAC	1 cut(s)	208
AlwI	GGATC	4 cut(s)	253, 354, 367, 393
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	6 cut(s)	153, 191, 252, 327, 366, 600
ApaLI	GTGCAC	1 cut(s)	208
AsiGI	ACCGGT	1 cut(s)	448
Asp718I	GGTACC	1 cut(s)	505
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	2 cut(s)	191, 523
AsuC2I	CCSGG	3 cut(s)	97, 539, 564
AvaI	CYCGRG	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	523
BaeGI	GKGCMC	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	359
BanI	GGYRCC	2 cut(s)	445, 505
BanII	GRGCYC	1 cut(s)	283
BarI	GAAGNNNNNNTAC	4 cut(s)	451, 483, 619, 651
Bbv12I	GWGCWC	2 cut(s)	212, 283
BccI	CCATC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	346, 521
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	3 cut(s)	97, 539, 564
BfmI	CTRYAG	1 cut(s)	40
Bme1390I	CCNGG	5 cut(s)	97, 346, 521, 539, 564
Bme18I	GGWCC	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	160
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	2 cut(s)	191, 523
BmiI	GGNNCC	3 cut(s)	361, 447, 507
BmrFI	CCNGG	5 cut(s)	97, 346, 521, 539, 564
BmsI	GCATC	1 cut(s)	325
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	1 cut(s)	503
BpuMI	CCSGG	3 cut(s)	97, 539, 564
BsaJI	CCNNGG	2 cut(s)	324, 363
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 275, 563
Bse118I	RCCGGY	2 cut(s)	145, 448
Bse1I	ACTGG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	346, 521
BseDI	CCNNGG	2 cut(s)	324, 363
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	162, 275, 563
BseNI	ACTGG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	405, 675
BseSI	GKGCMC	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	264, 276
BshFI	GGCC	6 cut(s)	155, 193, 254, 329, 368, 602
BshNI	GGYRCC	2 cut(s)	445, 505
BshTI	ACCGGT	1 cut(s)	448
BsiHKAI	GWGCWC	2 cut(s)	212, 283
BsiHKCI	CYCGRG	1 cut(s)	160
BsiSI	CCGG	6 cut(s)	96, 146, 383, 449, 539, 563
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	3 cut(s)	162, 275, 563
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	6 cut(s)	155, 193, 254, 329, 368, 602
BsoBI	CYCGRG	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	212, 283
Bsp143I	GATC	5 cut(s)	9, 258, 359, 385, 421
Bsp19I	CCATGG	1 cut(s)	324
BspACI	CCGC	5 cut(s)	122, 262, 276, 491, 624
BspANI	GGCC	6 cut(s)	155, 193, 254, 329, 368, 602
BspFNI	CGCG	2 cut(s)	264, 276
BspLI	GGNNCC	3 cut(s)	361, 447, 507
BspMAI	CTGCAG	1 cut(s)	44
BspPI	GGATC	4 cut(s)	253, 354, 367, 393
BspT107I	GGYRCC	2 cut(s)	445, 505
BsrFI	RCCGGY	2 cut(s)	145, 448
BsrI	ACTGG	1 cut(s)	312
BssAI	RCCGGY	2 cut(s)	145, 448
BssECI	CCNNGG	2 cut(s)	324, 363
BssMI	GATC	5 cut(s)	9, 258, 359, 385, 421
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	346, 521
Bst4CI	ACNGT	2 cut(s)	527, 584
BstC8I	GCNNGC	5 cut(s)	147, 153, 157, 569, 600
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	2 cut(s)	264, 276
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	5 cut(s)	12, 261, 362, 388, 424
BstMBI	GATC	5 cut(s)	9, 258, 359, 385, 421
BstMWI	GCNNNNNNNGC	8 cut(s)	48, 326, 335, 379, 615, 618, 621, 627
BstNI	CCWGG	2 cut(s)	346, 521
BstNSI	RCATGY	2 cut(s)	486, 571
BstSCI	CCNGG	5 cut(s)	95, 344, 519, 537, 562
BstSFI	CTRYAG	1 cut(s)	40
BstSLI	GKGCMC	1 cut(s)	212
BstUI	CGCG	2 cut(s)	264, 276
BstX2I	RGATCY	2 cut(s)	258, 359
BstXI	CCANNNNNNTGG	1 cut(s)	646
BstYI	RGATCY	2 cut(s)	258, 359
BsuRI	GGCC	6 cut(s)	155, 193, 254, 329, 368, 602
BtgI	CCRYGG	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	105
BtsI	GCAGTG	2 cut(s)	37, 115
BtsIMutI	CAGTG	3 cut(s)	37, 115, 319
Cac8I	GCNNGC	5 cut(s)	147, 153, 157, 569, 600
CfoI	GCGC	1 cut(s)	151
Cfr10I	RCCGGY	2 cut(s)	145, 448
Cfr13I	GGNCC	2 cut(s)	191, 523
Csp6I	GTAC	4 cut(s)	395, 506, 528, 668
CspAI	ACCGGT	1 cut(s)	448
CviAII	CATG	6 cut(s)	237, 325, 442, 483, 568, 640
CviQI	GTAC	4 cut(s)	395, 506, 528, 668
DpnI	GATC	5 cut(s)	11, 260, 361, 387, 423
DpnII	GATC	5 cut(s)	9, 258, 359, 385, 421
EaeI	YGGCCR	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	344, 519
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	6 cut(s)	240, 328, 445, 486, 571, 643
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	6 cut(s)	236, 324, 441, 482, 567, 639
FauI	CCCGC	1 cut(s)	498
FbaI	TGATCA	1 cut(s)	421
FokI	GGATG	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	283
GlaI	GCGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	6 cut(s)	155, 193, 254, 329, 368, 602
HapII	CCGG	6 cut(s)	96, 146, 383, 449, 539, 563
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	6 cut(s)	240, 328, 445, 486, 571, 643
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	1 cut(s)	547
HpaII	CCGG	6 cut(s)	96, 146, 383, 449, 539, 563
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	364, 390, 546
Hpy188III	TCNNGA	2 cut(s)	26, 419
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	666
HpyCH4III	ACNGT	2 cut(s)	527, 584
HpyCH4IV	ACGT	3 cut(s)	60, 299, 308
HpyCH4V	TGCA	4 cut(s)	42, 210, 482, 571
HpyF10VI	GCNNNNNNNGC	8 cut(s)	48, 326, 335, 379, 615, 618, 621, 627
HpySE526I	ACGT	3 cut(s)	60, 299, 308
Hsp92II	CATG	6 cut(s)	240, 328, 445, 486, 571, 643
HspAI	GCGC	1 cut(s)	149
KpnI	GGTACC	1 cut(s)	509
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	5 cut(s)	9, 258, 359, 385, 421
LmnI	GCTCC	2 cut(s)	278, 522
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	3 cut(s)	60, 299, 308
MalI	GATC	5 cut(s)	11, 260, 361, 387, 423
MboI	GATC	5 cut(s)	9, 258, 359, 385, 421
MboII	GAAGA	2 cut(s)	151, 459
MflI	RGATCY	2 cut(s)	258, 359
MhlI	GDGCHC	2 cut(s)	212, 283
MluCI	AATT	2 cut(s)	401, 460
MroNI	GCCGGC	1 cut(s)	145
MslI	CAYNNNNRTG	2 cut(s)	638, 644
MspA1I	CMGCKG	1 cut(s)	624
MspI	CCGG	6 cut(s)	96, 146, 383, 449, 539, 563
MspR9I	CCNGG	5 cut(s)	97, 346, 521, 539, 564
MvaI	CCWGG	2 cut(s)	346, 521
MvnI	CGCG	2 cut(s)	264, 276
MwoI	GCNNNNNNNGC	8 cut(s)	48, 326, 335, 379, 615, 618, 621, 627
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	3 cut(s)	97, 539, 564
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	5 cut(s)	9, 258, 359, 385, 421
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	6 cut(s)	240, 328, 445, 486, 571, 643
NlaIV	GGNNCC	3 cut(s)	361, 447, 507
NmeAIII	GCCGAG	2 cut(s)	262, 280
NspI	RCATGY	2 cut(s)	486, 571
PaeI	GCATGC	1 cut(s)	571
PaeR7I	CTCGAG	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	547
PfoI	TCCNGGA	2 cut(s)	95, 519
PinAI	ACCGGT	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	344, 519
PspGI	CCWGG	2 cut(s)	344, 519
PspN4I	GGNNCC	3 cut(s)	361, 447, 507
PspPI	GGNCC	2 cut(s)	191, 523
PspXI	VCTCGAGB	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	44
PsuI	RGATCY	2 cut(s)	258, 359
RsaI	GTAC	4 cut(s)	396, 507, 529, 669
RsaNI	GTAC	4 cut(s)	395, 506, 528, 668
RseI	CAYNNNNRTG	2 cut(s)	638, 644
SacI	GAGCTC	1 cut(s)	283
Sau3AI	GATC	5 cut(s)	9, 258, 359, 385, 421
Sau96I	GGNCC	2 cut(s)	191, 523
ScrFI	CCNGG	5 cut(s)	97, 346, 521, 539, 564
SduI	GDGCHC	2 cut(s)	212, 283
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	160
SgrAI	CRCCGGYG	1 cut(s)	448
SinI	GGWCC	1 cut(s)	523
SlaI	CTCGAG	1 cut(s)	160
SmiMI	CAYNNNNRTG	2 cut(s)	638, 644
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
SphI	GCATGC	1 cut(s)	571
Sse9I	AATT	2 cut(s)	401, 460
SsiI	CCGC	5 cut(s)	122, 262, 276, 491, 624
SstI	GAGCTC	1 cut(s)	283
StyD4I	CCNGG	5 cut(s)	95, 344, 519, 537, 562
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	527, 584
TaiI	ACGT	3 cut(s)	63, 302, 311
TaqI	TCGA	2 cut(s)	161, 303
TasI	AATT	2 cut(s)	401, 460
TfiI	GAWTC	1 cut(s)	547
TscAI	CASTG	3 cut(s)	44, 115, 319
TspDTI	ATGAA	4 cut(s)	11, 95, 152, 453
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	3 cut(s)	44, 115, 319
VneI	GTGCAC	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	523
XceI	RCATGY	2 cut(s)	486, 571
XhoI	CTCGAG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.