Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

33888993 .. 33891933

Gene Structure 2941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G372100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTGAAGTCAGAGATGAGCAGCGTTAAGGTTGGGGAAAGAAAGCAAGTGAAGAGGCCTGCACAGGCCAGTTCAAGAAAGGGGTGCATGAGAGGGAAAGGAGGCCCTGAGAATGCCATGTGCACTTACAAAGGTGTGAGGCAGAGGACTTGGGGGAAATGGGTGGCTGAAATCCGTGAGCCCAACCGAGGTGCTCGTCTCTGGCTTGGCACTTTTGACACCTCCCATGAAGCTGCTTCGGCTTATGATGCTGCTGCGCGCAAACTCTACGGTTCCCAGGCCAAGCTCAATTTGCCTGATCAATATCACCATCAAGTCCCTTCCTCTGCCAACACCCACATGCTTTCACAGACGCCAAACCCATCAGCCCAACTAACCCTTCTGCATCAGAATCCATCAGGTACTTCCAGTGCCTGTTTATCAAACGATTATGCTGCTCCTCTCAACGATGTTGCAGTTCCAGTACTTCGCGATCATTTTCCGAATGTGAAAGCTCATCAGCCCCATGGTACTTACCCTGAGCCTAAGCCAGAGGCAGAGCACAGCAAGATGAAAGTGGAGGAGAATATGAGTGGCAATGAAGGAATGGAGTCTGGAATTTTCTGGGGCAACGTAAGCGGAAACTTTCCGATGTTCGATGACTCGATATGGGTGGAGGCAGCCATGTCCCTTGATTTTCCGGTGATAGAAGATCATGGCATTTTTTCCAGCAACTTCGTCGATGGAAGTGTTTGGGAACCATTGCAGCCATCTCCATGGTGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

256

Amino Acids

28.14

Weight (kDa)

6.55

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	259, 471
AciI	CCGC	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	3 cut(s)	403, 465, 511
AfiI	CCNNNNNNNGG	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	7, 75
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AluBI	AGCT	3 cut(s)	233, 286, 494
AluI	AGCT	3 cut(s)	233, 286, 494
Alw21I	GWGCWC	3 cut(s)	125, 196, 543
Alw26I	GTCTC	1 cut(s)	203
Alw44I	GTGCAC	1 cut(s)	121
AlwNI	CAGNNNCTG	1 cut(s)	414
AoxI	GGCC	4 cut(s)	56, 66, 103, 279
ApaLI	GTGCAC	1 cut(s)	121
ApeKI	GCWGC	7 cut(s)	21, 233, 251, 254, 434, 659, 745
ApoI	RAATTY	1 cut(s)	597
AspLEI	GCGC	2 cut(s)	259, 261
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	299, 694
BaeGI	GKGCMC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	3 cut(s)	125, 196, 543
BbvI	GCAGC	7 cut(s)	33, 220, 238, 241, 421, 671, 757
BccI	CCATC	5 cut(s)	318, 370, 403, 716, 757
BcgI	CGANNNNNNTGC	4 cut(s)	416, 450, 700, 734
BciT130I	CCWGG	1 cut(s)	278
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	203
BisI	GCNGC	7 cut(s)	22, 234, 252, 255, 435, 660, 746
BlsI	GCNGC	7 cut(s)	23, 235, 253, 256, 436, 661, 747
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	274, 738
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	238, 394
Bpu10I	CCTNAGC	2 cut(s)	519, 525
BsaBI	GATNNNNATC	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	4 cut(s)	187, 276, 505, 755
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse1I	ACTGG	3 cut(s)	69, 408, 461
Bse3DI	GCAATG	2 cut(s)	583, 740
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	4 cut(s)	187, 276, 505, 755
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	2 cut(s)	583, 740
BseMII	CTCAG	2 cut(s)	99, 510
BseNI	ACTGG	3 cut(s)	69, 408, 461
BsePI	GCGCGC	1 cut(s)	257
BseRI	GAGGAG	2 cut(s)	429, 575
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	7 cut(s)	33, 220, 238, 241, 421, 671, 757
BsgI	GTGCAG	1 cut(s)	45
Bsh1236I	CGCG	2 cut(s)	259, 471
BshFI	GGCC	4 cut(s)	58, 68, 105, 281
BsiHKAI	GWGCWC	3 cut(s)	125, 196, 543
BsiSI	CCGG	1 cut(s)	680
BslFI	GGGAC	2 cut(s)	302, 652
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	203
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	302, 652
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	4 cut(s)	58, 68, 105, 281
Bsp1286I	GDGCHC	4 cut(s)	125, 183, 196, 543
Bsp143I	GATC	3 cut(s)	298, 472, 691
Bsp19I	CCATGG	2 cut(s)	505, 755
Bsp68I	TCGCGA	1 cut(s)	471
BspACI	CCGC	1 cut(s)	618
BspANI	GGCC	4 cut(s)	58, 68, 105, 281
BspCNI	CTCAG	2 cut(s)	100, 511
BspFNI	CGCG	2 cut(s)	259, 471
BspLI	GGNNCC	2 cut(s)	274, 738
BsrDI	GCAATG	2 cut(s)	583, 740
BsrI	ACTGG	3 cut(s)	69, 408, 461
BssECI	CCNNGG	4 cut(s)	187, 276, 505, 755
BssHII	GCGCGC	1 cut(s)	257
BssMI	GATC	3 cut(s)	298, 472, 691
BssNI	GRCGYC	1 cut(s)	353
BssT1I	CCWWGG	2 cut(s)	505, 755
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	60, 259
BstDEI	CTNAG	3 cut(s)	108, 519, 525
BstDSI	CCRYGG	2 cut(s)	505, 755
BstFNI	CGCG	2 cut(s)	259, 471
BstHHI	GCGC	2 cut(s)	259, 261
BstKTI	GATC	3 cut(s)	301, 475, 694
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	298, 472, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 248, 292, 615
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	125
BstUI	CGCG	2 cut(s)	259, 471
BstV1I	GCAGC	7 cut(s)	33, 220, 238, 241, 421, 671, 757
BstXI	CCANNNNNNTGG	1 cut(s)	756
BsuRI	GGCC	4 cut(s)	58, 68, 105, 281
BtgI	CCRYGG	2 cut(s)	505, 755
BtsIMutI	CAGTG	1 cut(s)	415
BtuMI	TCGCGA	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	60, 259
CaiI	CAGNNNCTG	1 cut(s)	414
CfoI	GCGC	2 cut(s)	259, 261
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	361
Csp6I	GTAC	3 cut(s)	402, 464, 510
CviAII	CATG	8 cut(s)	88, 118, 227, 340, 506, 664, 695, 756
CviQI	GTAC	3 cut(s)	402, 464, 510
DdeI	CTNAG	3 cut(s)	108, 519, 525
DpnI	GATC	3 cut(s)	300, 474, 693
DpnII	GATC	3 cut(s)	298, 472, 691
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	2 cut(s)	505, 755
Eco147I	AGGCCT	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	276
EcoT14I	CCWWGG	2 cut(s)	505, 755
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	2 cut(s)	505, 755
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	8 cut(s)	91, 121, 230, 343, 509, 667, 698, 759
FaqI	GGGAC	2 cut(s)	302, 652
FatI	CATG	8 cut(s)	87, 117, 226, 339, 505, 663, 694, 755
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	7 cut(s)	22, 234, 252, 255, 435, 660, 746
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	7 cut(s)	22, 234, 252, 255, 435, 660, 746
GlaI	GCGC	2 cut(s)	258, 260
GluI	GCNGC	7 cut(s)	22, 234, 252, 255, 435, 660, 746
HaeIII	GGCC	4 cut(s)	58, 68, 105, 281
HapII	CCGG	1 cut(s)	680
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	2 cut(s)	259, 261
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	8 cut(s)	91, 121, 230, 343, 509, 667, 698, 759
Hin6I	GCGC	2 cut(s)	257, 259
HinP1I	GCGC	2 cut(s)	257, 259
HinfI	GANTC	3 cut(s)	391, 590, 641
HpaII	CCGG	1 cut(s)	680
HphI	GGTGA	2 cut(s)	299, 694
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	4 cut(s)	13, 390, 483, 630
Hpy188III	TCNNGA	3 cut(s)	75, 470, 594
Hpy8I	GTNNAC	1 cut(s)	123
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	3 cut(s)	330, 389, 575
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	6 cut(s)	62, 87, 123, 385, 455, 745
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 248, 292, 615
HpyF3I	CTNAG	3 cut(s)	108, 519, 525
HpySE526I	ACGT	1 cut(s)	612
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	8 cut(s)	91, 121, 230, 343, 509, 667, 698, 759
HspAI	GCGC	2 cut(s)	257, 259
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	298, 472, 691
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	7 cut(s)	33, 220, 238, 241, 421, 671, 757
LweI	GCATC	2 cut(s)	238, 394
MaeII	ACGT	1 cut(s)	612
MalI	GATC	3 cut(s)	300, 474, 693
MboI	GATC	3 cut(s)	298, 472, 691
MboII	GAAGA	2 cut(s)	64, 701
MhlI	GDGCHC	4 cut(s)	125, 183, 196, 543
MluCI	AATT	2 cut(s)	289, 597
MlyI	GAGTC	2 cut(s)	599, 635
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	2 cut(s)	338, 754
MspI	CCGG	1 cut(s)	680
MspR9I	CCNGG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	278
MvnI	CGCG	2 cut(s)	259, 471
MwoI	GCNNNNNNNGC	4 cut(s)	239, 248, 292, 615
NcoI	CCATGG	2 cut(s)	505, 755
NdeII	GATC	3 cut(s)	298, 472, 691
NlaIII	CATG	8 cut(s)	91, 121, 230, 343, 509, 667, 698, 759
NlaIV	GGNNCC	2 cut(s)	274, 738
NruI	TCGCGA	1 cut(s)	471
NspI	RCATGY	1 cut(s)	343
PauI	GCGCGC	1 cut(s)	257
PceI	AGGCCT	1 cut(s)	58
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	7 cut(s)	23, 235, 253, 256, 436, 661, 747
PleI	GAGTC	2 cut(s)	598, 635
PpsI	GAGTC	2 cut(s)	598, 635
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	274, 738
PspPI	GGNCC	1 cut(s)	104
PstNI	CAGNNNCTG	1 cut(s)	414
PteI	GCGCGC	1 cut(s)	257
RruI	TCGCGA	1 cut(s)	471
RsaI	GTAC	3 cut(s)	403, 465, 511
RsaNI	GTAC	3 cut(s)	402, 464, 510
RseI	CAYNNNNRTG	2 cut(s)	338, 754
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	7 cut(s)	22, 234, 252, 255, 435, 660, 746
Sau3AI	GATC	3 cut(s)	298, 472, 691
Sau96I	GGNCC	1 cut(s)	104
ScaI	AGTACT	1 cut(s)	465
SchI	GAGTC	2 cut(s)	599, 635
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	4 cut(s)	125, 183, 196, 543
SetI	ASST	9 cut(s)	33, 136, 193, 224, 235, 288, 403, 496, 615
SfaNI	GCATC	2 cut(s)	238, 394
SmiMI	CAYNNNNRTG	2 cut(s)	338, 754
Sse9I	AATT	2 cut(s)	289, 597
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	1 cut(s)	618
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	505, 755
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	3 cut(s)	636, 644, 720
TasI	AATT	2 cut(s)	289, 597
TatI	WGTACW	1 cut(s)	463
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	7 cut(s)	21, 233, 251, 254, 434, 659, 745
TspDTI	ATGAA	3 cut(s)	243, 566, 594
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	415
VneI	GTGCAC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	597
XceI	RCATGY	1 cut(s)	343
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.