Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

5495744 .. 5495959

Gene Structure 216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1059100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAGGGGGAAAGGAGGGCCAGAGAACGCTATGTGCACTTACAAGGGCGTCAGGCAAAGAACGTGGGGCAAATGGGTGGTGGAAATCCGCGAGCCCCACCGCAGAGCCCGGCTCTGGCTCGGGACTTTCGACACCTCCTATGAGGCTGCTCTGGCTTATGATGCTGCCGCGGCGGCGGCCTGGAAGCTCTACGGTTCCCAGGCGAAGCTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

72

Amino Acids

8.03

Weight (kDa)

9.91

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	14 - 61	1.1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	90, 170
AciI	CCGC	6 cut(s)	88, 100, 168, 170, 173, 176
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	114
AjnI	CCWGG	2 cut(s)	179, 198
AluBI	AGCT	2 cut(s)	187, 208
AluI	AGCT	2 cut(s)	187, 208
Alw21I	GWGCWC	1 cut(s)	38
Alw44I	GTGCAC	1 cut(s)	34
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	17, 177
ApaLI	GTGCAC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	146, 164
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	38
BanII	GRGCYC	2 cut(s)	96, 109
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	133, 151
BciT130I	CCWGG	2 cut(s)	181, 200
BcnI	CCSGG	1 cut(s)	109
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	6 cut(s)	147, 165, 168, 171, 174, 177
BlsI	GCNGC	6 cut(s)	148, 166, 169, 172, 175, 178
Bme1390I	CCNGG	3 cut(s)	109, 181, 200
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	3 cut(s)	109, 181, 200
BmsI	GCATC	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
BpuMI	CCSGG	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	181, 200
BseDI	CCNNGG	2 cut(s)	168, 198
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	133, 151
Bsh1236I	CGCG	2 cut(s)	90, 170
BshFI	GGCC	2 cut(s)	19, 179
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	19, 179
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	3 cut(s)	38, 96, 109
BspACI	CCGC	6 cut(s)	88, 100, 168, 170, 173, 176
BspANI	GGCC	2 cut(s)	19, 179
BspFNI	CGCG	2 cut(s)	90, 170
BspLI	GGNNCC	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	168, 198
BssNI	GRCGYC	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	181, 200
Bst4CI	ACNGT	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	92
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	2 cut(s)	90, 170
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 161, 170, 173, 176
BstNI	CCWGG	2 cut(s)	181, 200
BstSCI	CCNGG	3 cut(s)	107, 179, 198
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	2 cut(s)	90, 170
BstV1I	GCAGC	2 cut(s)	133, 151
BsuRI	GGCC	2 cut(s)	19, 179
BtgI	CCRYGG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	17
Cfr42I	CCGCGG	1 cut(s)	171
CseI	GACGC	1 cut(s)	37
CspCI	CAANNNNNGTGG	2 cut(s)	44, 79
Eco24I	GRGCYC	2 cut(s)	96, 109
Eco88I	CYCGRG	1 cut(s)	119
EcoRII	CCWGG	2 cut(s)	179, 198
EcoT38I	GRGCYC	2 cut(s)	96, 109
FaiI	YATR	3 cut(s)	32, 141, 159
FaqI	GGGAC	1 cut(s)	136
Fnu4HI	GCNGC	6 cut(s)	147, 165, 168, 171, 174, 177
FriOI	GRGCYC	2 cut(s)	96, 109
Fsp4HI	GCNGC	6 cut(s)	147, 165, 168, 171, 174, 177
GluI	GCNGC	6 cut(s)	147, 165, 168, 171, 174, 177
HaeIII	GGCC	2 cut(s)	19, 179
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	48
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 161, 170, 173, 176
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	48
KspI	CCGCGG	1 cut(s)	171
LpnPI	CCDG	9 cut(s)	33, 37, 100, 122, 137, 166, 185, 193, 212
Lsp1109I	GCAGC	2 cut(s)	133, 151
LweI	GCATC	1 cut(s)	151
MaeII	ACGT	1 cut(s)	62
MhlI	GDGCHC	3 cut(s)	38, 96, 109
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	3 cut(s)	8, 136, 145
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	109
MspR9I	CCNGG	3 cut(s)	109, 181, 200
MvaI	CCWGG	2 cut(s)	181, 200
MvnI	CGCG	2 cut(s)	90, 170
MwoI	GCNNNNNNNGC	5 cut(s)	152, 161, 170, 173, 176
NciI	CCSGG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PkrI	GCNGC	6 cut(s)	148, 166, 169, 172, 175, 178
Psp6I	CCWGG	2 cut(s)	179, 198
PspGI	CCWGG	2 cut(s)	179, 198
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	17
SacII	CCGCGG	1 cut(s)	171
SatI	GCNGC	6 cut(s)	147, 165, 168, 171, 174, 177
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	3 cut(s)	109, 181, 200
SduI	GDGCHC	3 cut(s)	38, 96, 109
SetI	ASST	4 cut(s)	65, 137, 189, 210
SfaNI	GCATC	1 cut(s)	151
Sfr303I	CCGCGG	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	6 cut(s)	88, 100, 168, 170, 173, 176
StyD4I	CCNGG	3 cut(s)	107, 179, 198
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	211
TauI	GCSGC	4 cut(s)	170, 173, 176, 179
TseI	GCWGC	2 cut(s)	146, 164
VneI	GTGCAC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.