RLG00000025861

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003740
Physical Location & Seq
Forward (+)
48738752 .. 48739363
612 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025861

Sequence Viewer

Length: 492 bp
ATGAAAGGGAAGGGAGGCCCTGAGAACGCTACGTGCACTTTCAGAGGAGTCAGGCAAAGAACTTGGGGCAAATGGGTGGCCGAAATACGCGAGCCCAAACGCGGTGCTAGGCTTTGGCTAGGCACTTTCAACACTTCCACGGAGGCAGCGCTGGCTTATGACGATGCGGCTCGAAAGCTGTACGGCTCCTCCGCCAAGCTCAACTTGCTGGACCACTCCTCCTCCTCCTCCTACTCCTCCACATCACCGTCTTCGAAAACGAGTTATGCTTATAAAGTTTGTGGTGAACACAAGCATGAAGCTTATTCAGGTGATATGCATGGAGGTTGGGGTAGTAATAATGGAGAGAATGATTGCTTGTGCGAGTGTAATCCTATGTTGAGTGCTGATTGGCCTGGAGTTTGTGGGGAGAGGGAATTCTTAGAGCTGAATGATATAGGAATTATGATGGGTGGAAATGGCTTTGATGGTTCTCTTGTTGGTATGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

164

Amino Acids

17.68

Weight (kDa)

6.07

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 14 - 62 4.3e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccII CGCG 2 cut(s) 90, 102
AciI CCGC 3 cut(s) 102, 167, 192
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 416
AfaI GTAC 1 cut(s) 182
AfeI AGCGCT 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 394
AluBI AGCT 4 cut(s) 178, 199, 302, 427
AluI AGCT 4 cut(s) 178, 199, 302, 427
Alw21I GWGCWC 1 cut(s) 38
Alw44I GTGCAC 1 cut(s) 34
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 3 cut(s) 16, 78, 392
ApaLI GTGCAC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 416
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 17, 211
AsuHPI GGTGA 3 cut(s) 237, 296, 323
AsuII TTCGAA 1 cut(s) 254
AvaII GGWCC 1 cut(s) 211
BaeGI GKGCMC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 158
BccI CCATC 2 cut(s) 442, 461
BceAI ACGGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 396
BfaI CTAG 2 cut(s) 108, 119
BfoI RGCGCY 1 cut(s) 152
BisI GCNGC 2 cut(s) 147, 168
BlsI GCNGC 2 cut(s) 148, 169
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 17, 211
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 243
BpmI CTGGAG 1 cut(s) 417
Bpu14I TTCGAA 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 6 cut(s) 173, 203, 203, 206, 233, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 12
BseRI GAGGAG 7 cut(s) 60, 178, 208, 211, 214, 217, 226
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 1 cut(s) 158
Bsh1236I CGCG 2 cut(s) 90, 102
BshFI GGCC 3 cut(s) 18, 80, 394
BsiHKAI GWGCWC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 101
BsnI GGCC 3 cut(s) 18, 80, 394
Bsp119I TTCGAA 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 38, 96
BspACI CCGC 3 cut(s) 102, 167, 192
BspANI GGCC 3 cut(s) 18, 80, 394
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 2 cut(s) 90, 102
BspLI GGNNCC 1 cut(s) 187
BspT104I TTCGAA 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 396
Bst4CI ACNGT 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 33
BstBI TTCGAA 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 92, 153
BstDEI CTNAG 2 cut(s) 21, 421
BstDSI CCRYGG 1 cut(s) 138
BstFNI CGCG 2 cut(s) 90, 102
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstMWI GCNNNNNNNGC 2 cut(s) 152, 205
BstNI CCWGG 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 394
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 2 cut(s) 90, 102
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 243
BsuRI GGCC 3 cut(s) 18, 80, 394
BtgI CCRYGG 1 cut(s) 138
Cac8I GCNNGC 2 cut(s) 92, 153
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 17, 211
Csp6I GTAC 1 cut(s) 181
CviAII CATG 2 cut(s) 296, 320
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 21, 421
EaeI YGGCCR 1 cut(s) 78
EciI GGCGGA 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 211
Eco47III AGCGCT 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 17
EcoRI GAATTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 394
EcoT22I ATGCAT 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 2 cut(s) 299, 323
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 2 cut(s) 295, 319
Fnu4HI GCNGC 2 cut(s) 147, 168
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 147, 168
FspBI CTAG 2 cut(s) 108, 119
GlaI GCGC 1 cut(s) 150
GluI GCNGC 2 cut(s) 147, 168
GsuI CTGGAG 1 cut(s) 417
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 3 cut(s) 18, 80, 394
HhaI GCGC 1 cut(s) 151
Hin1II CATG 2 cut(s) 299, 323
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 1 cut(s) 48
HphI GGTGA 3 cut(s) 237, 296, 323
Hpy166II GTNNAC 2 cut(s) 36, 287
Hpy188I TCNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 36, 287
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 36, 319
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 205
HpyF3I CTNAG 2 cut(s) 21, 421
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 2 cut(s) 299, 323
HspAI GCGC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 33, 37, 137, 194, 294, 381, 408
Lsp1109I GCAGC 1 cut(s) 158
LweI GCATC 1 cut(s) 154
MaeI CTAG 2 cut(s) 108, 119
MaeII ACGT 1 cut(s) 32
MboII GAAGA 1 cut(s) 243
MhlI GDGCHC 2 cut(s) 38, 96
MluCI AATT 2 cut(s) 416, 441
MlyI GAGTC 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 396
MvaI CCWGG 1 cut(s) 396
MvnI CGCG 2 cut(s) 90, 102
MwoI GCNNNNNNNGC 2 cut(s) 152, 205
NlaIII CATG 2 cut(s) 299, 323
NlaIV GGNNCC 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 321
NspV TTCGAA 1 cut(s) 254
PkrI GCNGC 2 cut(s) 148, 169
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Ppu21I YACGTR 1 cut(s) 33
PsiI TTATAA 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 394
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 17, 211
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 294
SatI GCNGC 2 cut(s) 147, 168
Sau96I GGNCC 2 cut(s) 17, 211
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 1 cut(s) 396
SduI GDGCHC 2 cut(s) 38, 96
SetI ASST 7 cut(s) 35, 180, 201, 304, 313, 328, 429
SfaNI GCATC 1 cut(s) 154
SfuI TTCGAA 1 cut(s) 254
SinI GGWCC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 2 cut(s) 416, 441
SsiI CCGC 3 cut(s) 102, 167, 192
SspMI CTAG 2 cut(s) 108, 119
StyD4I CCNGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 1 cut(s) 35
TaqI TCGA 2 cut(s) 172, 254
TasI AATT 2 cut(s) 416, 441
TauI GCSGC 1 cut(s) 170
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 17, 312
TspGWI ACGGA 1 cut(s) 155
VneI GTGCAC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 1 cut(s) 416
XspI CTAG 2 cut(s) 108, 119
Zsp2I ATGCAT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.