Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

1185461 .. 1188392

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1020300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCCAAGTATTCAAGCCCTACTCCTCCACAAGCCACGTTTCAGGTCATGTCTGCCTTCCTCCTCATATAAGTACCTGCACCCTTGTGGGTTATGGTTTCTCAAACTCACCACCCGAATTAAAAAAAAAAAAAAAAAAAAAATCCTCAACTCTTCTAAAAAAATTCTCACAATGTCCAAGTGGGAGATGAGTGATGGTAGTAGCAGTGTTGGGGTTCCGGAGAAGAAGCCGGCGAAGCTGCCAGCACAGGGAAGCTCGAGGAAGGGTTGCATGAGGGGGAAAGGAGGGCCGGAGAACGCTATGTGCACTTACAAGGGCGTCAGGCAAAGAATGTGGGGGAAATGGGTGGCGGAAATCCGCGAGCCCAACCGCGGCCCCCGGCTCTGGCTCGGGACTTACGACACCTCCTATGAGGCTGCTCTGGCTTATGATGCGGCTGCTCGGAAGCTCTACGGTTCGGAGGCGCAGCTCAATTTGCCAGATCAGCAAGCCCCTAAATATCACCCTCATCAACTGAATCAGCACCCGCAGCATCAAGTATTTCCCTCGTCGGCCAATCCCCGCGTGCCACCTCAAATCCCGAACCAAACCCTTGTGCAGAACAATCCATCAGGTACTGGGACTAATCCTGCATGTTATGCTCCTCCTGTGAAAGATATTGCAGTACCTGTTATTCACAATAATTTTCCGAATGCGAAAGTGGATCAGCCCCACGGAAATTATAATTCTGGCGGGGCTGAGACTCTGCCGGAGCAGGGTGGCAGGAAAGTGGAAAAGAATATGAGCAGTGGTGTGAACAATGAAGGAATGGATGGGATATTCTGGGGGAACATGAGCGACAACTTTCCGGTATTTGATGACTGGATATGGACGGAGGAAGCCATATCGCTTGATCTTCCAGTGGGTAATGTAAAAGAGTCGCAGCTTGCAAGGTTTCTTGCAAGTTCTATTGTCCTTGTGATCATCATCAGGATTTGGACGATTCCTCTTCCTACCTCTTGGGGGAGTTTAAGGTTTGAGCTTATCCGTACAACACATCTTGTATATTTATCAATGCTGGGATTTAGAGCCAATTCTGCAAGTGCACTTATTGCAATTGGACTTGGAGTCATAATTTCATTATCTATGCTAGTAGTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

381

Amino Acids

42.15

Weight (kDa)

9.79

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	104 - 152	1.1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	723
Acc36I	ACCTGC	1 cut(s)	84
AccII	CGCG	3 cut(s)	360, 372, 564
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	8 cut(s)	350, 358, 370, 372, 434, 527, 562, 732
AclWI	GGATC	1 cut(s)	711
AcoI	YGGCCR	1 cut(s)	552
AcsI	RAATTY	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	4 cut(s)	74, 616, 666, 1030
AfiI	CCNNNNNNNGG	5 cut(s)	248, 371, 384, 755, 1002
AgsI	TTSAA	1 cut(s)	14
AhdI	GACNNNNNGTC	1 cut(s)	1106
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	6 cut(s)	238, 255, 448, 469, 925, 1021
AluI	AGCT	6 cut(s)	238, 255, 448, 469, 925, 1021
Alw21I	GWGCWC	2 cut(s)	308, 1087
Alw26I	GTCTC	1 cut(s)	734
Alw44I	GTGCAC	2 cut(s)	304, 1083
AlwI	GGATC	1 cut(s)	711
AlwNI	CAGNNNCTG	2 cut(s)	617, 668
Ama87I	CYCGRG	2 cut(s)	256, 389
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	3 cut(s)	287, 373, 552
ApaLI	GTGCAC	2 cut(s)	304, 1083
ApeKI	GCWGC	6 cut(s)	238, 416, 437, 466, 529, 922
ApoI	RAATTY	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	466
AspS9I	GGNCC	2 cut(s)	287, 374
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	2 cut(s)	100, 494
AvaI	CYCGRG	2 cut(s)	256, 389
BaeGI	GKGCMC	2 cut(s)	308, 1087
BanII	GRGCYC	1 cut(s)	366
Bbv12I	GWGCWC	2 cut(s)	308, 1087
BbvI	GCAGC	6 cut(s)	225, 403, 424, 478, 541, 934
BccI	CCATC	3 cut(s)	188, 616, 806
BclI	TGATCA	1 cut(s)	960
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	1 cut(s)	1130
BfuAI	ACCTGC	1 cut(s)	84
BisI	GCNGC	8 cut(s)	239, 373, 417, 435, 438, 467, 530, 923
BlsI	GCNGC	8 cut(s)	240, 374, 418, 436, 439, 468, 531, 924
Bme1390I	CCNGG	1 cut(s)	379
BmeRI	GACNNNNNGTC	1 cut(s)	1106
BmeT110I	CYCGRG	2 cut(s)	256, 389
BmgT120I	GGNCC	2 cut(s)	287, 374
BmiI	GGNNCC	2 cut(s)	216, 376
BmrFI	CCNGG	1 cut(s)	379
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	2 cut(s)	421, 541
BmuI	ACTGGG	1 cut(s)	627
BpuMI	CCSGG	1 cut(s)	379
BsaBI	GATNNNNATC	1 cut(s)	965
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	3 cut(s)	370, 377, 712
BsaWI	WCCGGW	2 cut(s)	217, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 371, 384, 755, 1002
Bse118I	RCCGGY	1 cut(s)	229
Bse1I	ACTGG	3 cut(s)	622, 866, 899
Bse8I	GATNNNNATC	1 cut(s)	965
BseAI	TCCGGA	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	370, 377, 712
BseGI	GGATG	1 cut(s)	817
BseJI	GATNNNNATC	1 cut(s)	965
BseLI	CCNNNNNNNGG	5 cut(s)	248, 371, 384, 755, 1002
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	3 cut(s)	622, 866, 899
BseRI	GAGGAG	3 cut(s)	14, 52, 633
BseSI	GKGCMC	2 cut(s)	308, 1087
BseXI	GCAGC	6 cut(s)	225, 403, 424, 478, 541, 934
BseYI	CCCAGC	1 cut(s)	1057
BsgI	GTGCAG	2 cut(s)	62, 617
Bsh1236I	CGCG	3 cut(s)	360, 372, 564
BshFI	GGCC	3 cut(s)	289, 375, 554
BsiHKAI	GWGCWC	2 cut(s)	308, 1087
BsiHKCI	CYCGRG	2 cut(s)	256, 389
BsiSI	CCGG	6 cut(s)	218, 230, 290, 379, 749, 848
BslFI	GGGAC	2 cut(s)	406, 634
BslI	CCNNNNNNNGG	5 cut(s)	248, 371, 384, 755, 1002
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	2 cut(s)	406, 634
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	3 cut(s)	289, 375, 554
BsoBI	CYCGRG	2 cut(s)	256, 389
Bsp1286I	GDGCHC	3 cut(s)	308, 366, 1087
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	4 cut(s)	481, 703, 892, 960
BspACI	CCGC	8 cut(s)	350, 358, 370, 372, 434, 527, 562, 732
BspANI	GGCC	3 cut(s)	289, 375, 554
BspCNI	CTCAG	1 cut(s)	730
BspEI	TCCGGA	1 cut(s)	217
BspFNI	CGCG	3 cut(s)	360, 372, 564
BspLI	GGNNCC	2 cut(s)	216, 376
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	229
BsrI	ACTGG	3 cut(s)	622, 866, 899
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	370, 377, 712
BssMI	GATC	4 cut(s)	481, 703, 892, 960
BssNI	GRCGYC	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	455
Bst6I	CTCTTC	2 cut(s)	157, 993
BstACI	GRCGYC	1 cut(s)	318
BstAPI	GCANNNNNTGC	2 cut(s)	638, 1091
BstC8I	GCNNGC	6 cut(s)	231, 243, 362, 489, 566, 927
BstDEI	CTNAG	1 cut(s)	738
BstDSI	CCRYGG	2 cut(s)	370, 712
BstF5I	GGATG	1 cut(s)	817
BstFNI	CGCG	3 cut(s)	360, 372, 564
BstHHI	GCGC	1 cut(s)	466
BstKTI	GATC	4 cut(s)	484, 706, 895, 963
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	4 cut(s)	481, 703, 892, 960
BstMWI	GCNNNNNNNGC	9 cut(s)	235, 422, 431, 475, 484, 529, 638, 1076, 1091
BstNSI	RCATGY	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	377
BstSLI	GKGCMC	2 cut(s)	308, 1087
BstUI	CGCG	3 cut(s)	360, 372, 564
BstV1I	GCAGC	6 cut(s)	225, 403, 424, 478, 541, 934
BsuRI	GGCC	3 cut(s)	289, 375, 554
BtgI	CCRYGG	2 cut(s)	370, 712
BtsCI	GGATG	1 cut(s)	817
BtsI	GCAGTG	2 cut(s)	211, 793
BtsIMutI	CAGTG	3 cut(s)	211, 793, 906
BveI	ACCTGC	1 cut(s)	84
Cac8I	GCNNGC	6 cut(s)	231, 243, 362, 489, 566, 927
CaiI	CAGNNNCTG	2 cut(s)	617, 668
CfoI	GCGC	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	287, 374
Cfr42I	CCGCGG	1 cut(s)	373
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	4 cut(s)	73, 615, 665, 1029
CspCI	CAANNNNNGTGG	2 cut(s)	314, 349
CviAII	CATG	4 cut(s)	48, 271, 633, 832
CviQI	GTAC	4 cut(s)	73, 615, 665, 1029
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	4 cut(s)	483, 705, 894, 962
DpnII	GATC	4 cut(s)	481, 703, 892, 960
DriI	GACNNNNNGTC	1 cut(s)	1106
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	2 cut(s)	157, 993
Eam1105I	GACNNNNNGTC	1 cut(s)	1106
EarI	CTCTTC	2 cut(s)	157, 993
EciI	GGCGGA	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	366
Eco88I	CYCGRG	2 cut(s)	256, 389
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	4 cut(s)	51, 274, 636, 835
FaqI	GGGAC	2 cut(s)	406, 634
FatI	CATG	4 cut(s)	47, 270, 632, 831
FauI	CCCGC	3 cut(s)	534, 569, 725
FbaI	TGATCA	1 cut(s)	960
Fnu4HI	GCNGC	8 cut(s)	239, 373, 417, 435, 438, 467, 530, 923
FokI	GGATG	1 cut(s)	824
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	8 cut(s)	239, 373, 417, 435, 438, 467, 530, 923
FspBI	CTAG	1 cut(s)	1130
GlaI	GCGC	1 cut(s)	465
GluI	GCNGC	8 cut(s)	239, 373, 417, 435, 438, 467, 530, 923
GsaI	CCCAGC	1 cut(s)	1061
HaeIII	GGCC	3 cut(s)	289, 375, 554
HapII	CCGG	6 cut(s)	218, 230, 290, 379, 749, 848
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	4 cut(s)	51, 274, 636, 835
Hin6I	GCGC	1 cut(s)	464
HinP1I	GCGC	1 cut(s)	464
HinfI	GANTC	5 cut(s)	517, 742, 917, 982, 1107
HpaII	CCGG	6 cut(s)	218, 230, 290, 379, 749, 848
HphI	GGTGA	2 cut(s)	100, 494
Hpy166II	GTNNAC	3 cut(s)	306, 796, 1085
Hpy188I	TCNGA	3 cut(s)	444, 460, 690
Hpy188III	TCNNGA	4 cut(s)	218, 391, 580, 970
Hpy8I	GTNNAC	3 cut(s)	306, 796, 1085
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	3 cut(s)	66, 256, 797
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	9 cut(s)	235, 422, 431, 475, 484, 529, 638, 1076, 1091
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	1 cut(s)	37
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	51, 274, 636, 835
HspAI	GCGC	1 cut(s)	464
Kpn2I	TCCGGA	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	229
KroNI	GCCGGC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	960
KspI	CCGCGG	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	481, 703, 892, 960
LmnI	GCTCC	2 cut(s)	646, 751
Lsp1109I	GCAGC	6 cut(s)	225, 403, 424, 478, 541, 934
LweI	GCATC	2 cut(s)	421, 541
MaeI	CTAG	1 cut(s)	1130
MaeII	ACGT	1 cut(s)	37
MalI	GATC	4 cut(s)	483, 705, 894, 962
MboI	GATC	4 cut(s)	481, 703, 892, 960
MboII	GAAGA	4 cut(s)	144, 235, 887, 980
MfeI	CAATTG	1 cut(s)	1095
MhlI	GDGCHC	3 cut(s)	308, 366, 1087
MluCI	AATT	9 cut(s)	117, 162, 472, 682, 718, 724, 1072, 1095, 1113
MlyI	GAGTC	3 cut(s)	736, 926, 1116
MroI	TCCGGA	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	229
MseI	TTAA	2 cut(s)	120, 1010
MslI	CAYNNNNRTG	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	372
MspI	CCGG	6 cut(s)	218, 230, 290, 379, 749, 848
MspR9I	CCNGG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	1095
Mva1269I	GAATGC	1 cut(s)	697
MvnI	CGCG	3 cut(s)	360, 372, 564
MwoI	GCNNNNNNNGC	9 cut(s)	235, 422, 431, 475, 484, 529, 638, 1076, 1091
NaeI	GCCGGC	1 cut(s)	231
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	4 cut(s)	481, 703, 892, 960
NgoMIV	GCCGGC	1 cut(s)	229
NlaIII	CATG	4 cut(s)	51, 274, 636, 835
NlaIV	GGNNCC	2 cut(s)	216, 376
NspI	RCATGY	1 cut(s)	636
OliI	CACNNNNGTG	1 cut(s)	84
PaeR7I	CTCGAG	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	1 cut(s)	697
PdiI	GCCGGC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	517, 982
PkrI	GCNGC	8 cut(s)	240, 374, 418, 436, 439, 468, 531, 924
PleI	GAGTC	3 cut(s)	736, 925, 1115
PpsI	GAGTC	3 cut(s)	736, 925, 1115
PsiI	TTATAA	1 cut(s)	723
PspFI	CCCAGC	1 cut(s)	1057
PspN4I	GGNNCC	2 cut(s)	216, 376
PspPI	GGNCC	2 cut(s)	287, 374
PspXI	VCTCGAGB	1 cut(s)	256
PstNI	CAGNNNCTG	2 cut(s)	617, 668
RsaI	GTAC	4 cut(s)	74, 616, 666, 1030
RsaNI	GTAC	4 cut(s)	73, 615, 665, 1029
RseI	CAYNNNNRTG	1 cut(s)	84
SacII	CCGCGG	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	120, 1010
SatI	GCNGC	8 cut(s)	239, 373, 417, 435, 438, 467, 530, 923
Sau3AI	GATC	4 cut(s)	481, 703, 892, 960
Sau96I	GGNCC	2 cut(s)	287, 374
SchI	GAGTC	3 cut(s)	736, 926, 1116
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	3 cut(s)	308, 366, 1087
SfaNI	GCATC	2 cut(s)	421, 541
Sfr274I	CTCGAG	1 cut(s)	256
Sfr303I	CCGCGG	1 cut(s)	373
SgrBI	CCGCGG	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	9 cut(s)	117, 162, 472, 682, 718, 724, 1072, 1095, 1113
SsiI	CCGC	8 cut(s)	350, 358, 370, 372, 434, 527, 562, 732
SspMI	CTAG	1 cut(s)	1130
StyD4I	CCNGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	257, 1138
TasI	AATT	9 cut(s)	117, 162, 472, 682, 718, 724, 1072, 1095, 1113
TauI	GCSGC	2 cut(s)	375, 437
TfiI	GAWTC	2 cut(s)	517, 982
Tru1I	TTAA	2 cut(s)	120, 1010
Tru9I	TTAA	2 cut(s)	120, 1010
TscAI	CASTG	3 cut(s)	211, 793, 906
TseI	GCWGC	6 cut(s)	238, 416, 437, 466, 529, 922
TspDTI	ATGAA	2 cut(s)	816, 1107
TspGWI	ACGGA	3 cut(s)	729, 887, 1016
TspRI	CASTG	3 cut(s)	211, 793, 906
VneI	GTGCAC	2 cut(s)	304, 1083
XapI	RAATTY	1 cut(s)	162
XceI	RCATGY	1 cut(s)	636
XhoI	CTCGAG	1 cut(s)	256
XspI	CTAG	1 cut(s)	1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.