Rh3DG016400

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003740
Physical Location & Seq
Reverse (-)
1008839 .. 1009920
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG016400.1

Sequence Viewer

Length: 780 bp
ATGTCAAATACTAGACAGGTGTCCCTTGACCGTTTGACATGTGTTGATCAAAGGTCGTCTGCTAGGGCAACAGCTAGCCAAGCTCTTGCTCTACACATGTCCACTTCCCACTTCTCTCCCAACTATTTAAGTATTACTTTGCCTTATCCCATCCCTGTATGTCGTCCCAGATTTCCCAAAACCTACTTACTAAGGCCGTGTTTCGGTGAGACCATGGACAATGACCAAGAGAGAAAGGTGATGAAGAAAGCCAACATGGGAAGGTCGAGAAAGGGCTGCATGAAAGGGAAGGGAGGCCCTGAGAACGCTACGTGCACTTTCAGAGGAGTCAGGCAAAGAACTTGGGGCAAATGGGTGGCGGAAATACGCGAGCCCAAACGAGGTGCTAGGCTCTGGCTAGGCACTTTCAACACTTCCACAGAGGCAGCGCTGGCTTATGACGATGCGGCAAGAAAGCTGTACGGCTCCTCCGCCAAGCTCAACTTGCCGGACCACTCCTCCTCCTCCTCCACATCACCGTCTTCGAAAAAGAGTTCTGCTGATAAAGGTTGTGGTGAACACAAGCATGAAGCTTATTCAGGTGATATGTATGGAGGTTGGAGTAGTAATAATGGAGAGAATGATTGCTTGTGGGAGAGTAATCCTGTGTTGAGGGTTGATTGGTCTGGAGTTTGTGAGGAGAGGGAATTCTTAGAGCTGAATGATATAGGAATTATGATGGGTGGAAATGGCTTTGTAAGTTGGGAGGCTTCTTTGGAAGAAGCTCCATGGAGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

259

Amino Acids

28.77

Weight (kDa)

8.74

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 107 - 155 9.8e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 369
AciI CCGC 3 cut(s) 359, 446, 471
AcsI RAATTY 1 cut(s) 686
AfaI GTAC 1 cut(s) 461
AfeI AGCGCT 1 cut(s) 429
AfiI CCNNNNNNNGG 2 cut(s) 203, 380
AflIII ACRYGT 2 cut(s) 38, 96
AgsI TTSAA 1 cut(s) 409
AluBI AGCT 8 cut(s) 74, 83, 457, 478, 572, 697, 764, 774
AluI AGCT 8 cut(s) 74, 83, 457, 478, 572, 697, 764, 774
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 203
Alw44I GTGCAC 1 cut(s) 313
Aor51HI AGCGCT 1 cut(s) 429
AoxI GGCC 2 cut(s) 194, 295
ApaLI GTGCAC 1 cut(s) 313
ApeKI GCWGC 2 cut(s) 276, 425
ApoI RAATTY 1 cut(s) 686
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 2 cut(s) 296, 490
AsuHPI GGTGA 5 cut(s) 218, 250, 507, 566, 593
AsuII TTCGAA 1 cut(s) 524
AsuNHI GCTAGC 1 cut(s) 74
AvaII GGWCC 1 cut(s) 490
BaeGI GKGCMC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 263, 437
BccI CCATC 2 cut(s) 158, 712
BceAI ACGGC 2 cut(s) 181, 478
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 5 cut(s) 12, 63, 75, 387, 398
BfoI RGCGCY 1 cut(s) 431
BisI GCNGC 3 cut(s) 277, 426, 447
BlsI GCNGC 3 cut(s) 278, 427, 448
Bme18I GGWCC 1 cut(s) 490
BmgT120I GGNCC 2 cut(s) 296, 490
BmiI GGNNCC 1 cut(s) 466
BmsI GCATC 1 cut(s) 433
BmtI GCTAGC 1 cut(s) 78
BoxI GACNNNNGTC 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 687
Bpu14I TTCGAA 1 cut(s) 524
BsaAI YACGTR 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 213, 767
BsaXI ACNNNNNCTCC 6 cut(s) 452, 482, 482, 485, 512, 515
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 380
BseDI CCNNGG 2 cut(s) 213, 767
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 203, 380
BseMII CTCAG 1 cut(s) 291
BseRI GAGGAG 7 cut(s) 339, 457, 487, 490, 493, 496, 692
BseSI GKGCMC 1 cut(s) 317
BseXI GCAGC 2 cut(s) 263, 437
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 196, 297
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 2 cut(s) 7, 150
BslI CCNNNNNNNGG 2 cut(s) 203, 380
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 2 cut(s) 7, 150
BsnI GGCC 2 cut(s) 196, 297
Bso31I GGTCTC 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 524
Bsp1286I GDGCHC 2 cut(s) 317, 375
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 2 cut(s) 213, 767
BspACI CCGC 3 cut(s) 359, 446, 471
BspANI GGCC 2 cut(s) 196, 297
BspCNI CTCAG 1 cut(s) 292
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 466
BspOI GCTAGC 1 cut(s) 78
BspT104I TTCGAA 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 213, 767
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 2 cut(s) 213, 767
Bst4CI ACNGT 2 cut(s) 32, 519
BstBAI YACGTR 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 3 cut(s) 76, 371, 432
BstDEI CTNAG 3 cut(s) 191, 300, 691
BstDSI CCRYGG 2 cut(s) 213, 767
BstF5I GGATG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 369
BstH2I RGCGCY 1 cut(s) 431
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 80, 431, 484
BstNSI RCATGY 2 cut(s) 42, 100
BstPAI GACNNNNGTC 1 cut(s) 19
BstSLI GKGCMC 1 cut(s) 317
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 2 cut(s) 263, 437
BstV2I GAAGAC 1 cut(s) 513
BsuRI GGCC 2 cut(s) 196, 297
BtgI CCRYGG 2 cut(s) 213, 767
BtsCI GGATG 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 76, 371, 432
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 296, 490
Csp6I GTAC 1 cut(s) 460
CviAII CATG 7 cut(s) 39, 97, 214, 256, 280, 566, 768
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 3 cut(s) 191, 300, 691
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EciI GGCGGA 2 cut(s) 374, 460
Eco130I CCWWGG 2 cut(s) 213, 767
Eco24I GRGCYC 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 490
Eco47III AGCGCT 1 cut(s) 429
EcoO109I RGGNCCY 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 686
EcoT14I CCWWGG 2 cut(s) 213, 767
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 2 cut(s) 213, 767
FaeI CATG 7 cut(s) 42, 100, 217, 259, 283, 569, 771
FalI AAGNNNNNCTT 4 cut(s) 121, 153, 467, 499
FaqI GGGAC 2 cut(s) 7, 150
FatI CATG 7 cut(s) 38, 96, 213, 255, 279, 565, 767
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 3 cut(s) 277, 426, 447
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 3 cut(s) 277, 426, 447
FspBI CTAG 5 cut(s) 12, 63, 75, 387, 398
GlaI GCGC 1 cut(s) 429
GluI GCNGC 3 cut(s) 277, 426, 447
GsuI CTGGAG 1 cut(s) 687
HaeII RGCGCY 1 cut(s) 431
HaeIII GGCC 2 cut(s) 196, 297
HapII CCGG 1 cut(s) 488
HhaI GCGC 1 cut(s) 430
Hin1II CATG 7 cut(s) 42, 100, 217, 259, 283, 569, 771
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 1 cut(s) 327
HpaII CCGG 1 cut(s) 488
HphI GGTGA 5 cut(s) 218, 250, 507, 566, 593
Hpy166II GTNNAC 3 cut(s) 102, 315, 557
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 2 cut(s) 267, 666
Hpy8I GTNNAC 3 cut(s) 102, 315, 557
HpyAV CCTTC 2 cut(s) 255, 283
HpyCH4III ACNGT 2 cut(s) 32, 519
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 2 cut(s) 279, 315
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 431, 484
HpyF3I CTNAG 3 cut(s) 191, 300, 691
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 7 cut(s) 42, 100, 217, 259, 283, 569, 771
HspAI GCGC 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 3 cut(s) 470, 769, 771
Lsp1109I GCAGC 2 cut(s) 263, 437
LweI GCATC 1 cut(s) 433
MaeI CTAG 5 cut(s) 12, 63, 75, 387, 398
MaeII ACGT 1 cut(s) 311
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 256, 513, 770
MhlI GDGCHC 2 cut(s) 317, 375
MluCI AATT 2 cut(s) 686, 711
MlyI GAGTC 1 cut(s) 336
MmeI TCCRAC 1 cut(s) 578
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 564
MspI CCGG 1 cut(s) 488
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 80, 431, 484
NcoI CCATGG 2 cut(s) 213, 767
NdeII GATC 1 cut(s) 46
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 7 cut(s) 42, 100, 217, 259, 283, 569, 771
NlaIV GGNNCC 1 cut(s) 466
NspI RCATGY 2 cut(s) 42, 100
NspV TTCGAA 1 cut(s) 524
PciI ACATGT 2 cut(s) 38, 96
PkrI GCNGC 3 cut(s) 278, 427, 448
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 312
PscI ACATGT 2 cut(s) 38, 96
PshAI GACNNNNGTC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 2 cut(s) 296, 490
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 564
SaqAI TTAA 1 cut(s) 128
SatI GCNGC 3 cut(s) 277, 426, 447
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 2 cut(s) 296, 490
SchI GAGTC 1 cut(s) 336
SduI GDGCHC 2 cut(s) 317, 375
SfaNI GCATC 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 1 cut(s) 490
SmiMI CAYNNNNRTG 1 cut(s) 564
Sse9I AATT 2 cut(s) 686, 711
SsiI CCGC 3 cut(s) 359, 446, 471
SspMI CTAG 5 cut(s) 12, 63, 75, 387, 398
StyI CCWWGG 2 cut(s) 213, 767
TaaI ACNGT 2 cut(s) 32, 519
TaiI ACGT 1 cut(s) 314
TaqI TCGA 2 cut(s) 266, 524
TasI AATT 2 cut(s) 686, 711
TauI GCSGC 1 cut(s) 449
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseI GCWGC 2 cut(s) 276, 425
TspDTI ATGAA 3 cut(s) 257, 296, 582
VneI GTGCAC 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 1 cut(s) 686
XceI RCATGY 2 cut(s) 42, 100
XspI CTAG 5 cut(s) 12, 63, 75, 387, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.