Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003740

Physical Location & Seq

Genomic Coordinates Reverse (-)

1182085 .. 1182585

Gene Structure 501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1020100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCGACGTCGGAGATGAGTGTTGGGGTCGCGGAGAAGAAGCCAGCGAAGCGGCCAGCGCAGGGAAGCTCAAGGAAGGGTTGCATGAAGGGGAAAGGAGGGCCGGAGAACGCTATGTGCACCTACAAGGGCGTCAGGCAAAGGACGTGGGGGAAATGGGTGGCTGAAATCCGCGAGCCCAACCGCGGTGCCCGGCTCTGGCTCGGGACTTTCGCCACCTCCTTTGAGGCCGCTCTGGCTTATGATGCCGCCGCCAGGAAGCTCTACGGTTCCAAGGCGAAGCTCAATTTGCCAGATCAGCAAGCCCCTAACTATCACCATCATCAACTGAATCAGCACCTGCAGCATCAAGTATTTCCCTCGTCGGCCAATGCCGGCGTGCCACCTCAAATTCCGAACCAAACCCTTGTGCTGAACAATCCATCAGGTACTGGGACTAATCCTGCATGTTATATATGCTGCTCCTGTGAAAGATATTGCAGTACCTGTTATTCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

167

Amino Acids

18.15

Weight (kDa)

9.46

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	42 - 90	2.2e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75490
fragaria_vesca	FvH4_2g38880 FvH4_6g01400
malus_domestica	MD07G1058600.v1.1 MD07G1059100.v1.1 MD08G1022600.v1.1 MD12G1252100.v1.1 MD15G1020100.v1.1 MD15G1020300.v1.1 MD15G1020500.v1.1
prunus_persica	Prupe.1G372100_v2.0.a1 Prupe.6G354000_v2.0.a1
pyrus_communis	pycom07g04480 pycom07g04490 pycom07g04520 pycom15g01670
rosa_chinensis	RchiOBHm_Chr3g0449031 RchiOBHm_Chr6g0301981
rosa_laevigata	RLG00000011209 RLG00000025861
rosa_multiflora	Rmu_sc0003116.1_g000010 Rmu_sc0006892.1_g000003 Rmu_sc0019189.1_g000002
rosa_roxburghii	Rroxscaffold_7G00166220
rosa_rugosa	Rorug02G0617400 Rorug06G0310800
rosa_samantha	Rh3BG016100 Rh3CG015100 Rh3DG016400 Rh6AG423300 Rh6BG430000 Rh6CG436400 Rh6DG423400
rosa_wichuraiana	Rw6G036670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	348
AatII	GACGTC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	348
AccB1I	GGYRCC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	3 cut(s)	32, 174, 186
AciI	CCGC	8 cut(s)	32, 52, 172, 184, 186, 231, 249, 252
AcoI	YGGCCR	2 cut(s)	53, 366
AcsI	RAATTY	1 cut(s)	390
AcyI	GRCGYC	2 cut(s)	8, 132
AfaI	GTAC	2 cut(s)	430, 484
AfiI	CCNNNNNNNGG	4 cut(s)	62, 185, 198, 255
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	3 cut(s)	69, 262, 283
AluI	AGCT	3 cut(s)	69, 262, 283
Alw21I	GWGCWC	1 cut(s)	122
Alw44I	GTGCAC	1 cut(s)	118
AlwNI	CAGNNNCTG	3 cut(s)	340, 431, 486
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	4 cut(s)	53, 101, 228, 366
ApaLI	GTGCAC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	343, 459
ApoI	RAATTY	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	203
BaeGI	GKGCMC	2 cut(s)	122, 193
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	355, 446
BccI	CCATC	2 cut(s)	327, 430
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	193
BfmI	CTRYAG	1 cut(s)	341
BfuAI	ACCTGC	1 cut(s)	348
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	6 cut(s)	53, 231, 249, 252, 344, 460
BlsI	GCNGC	6 cut(s)	54, 232, 250, 253, 345, 461
Bme1390I	CCNGG	2 cut(s)	193, 256
BmeT110I	CYCGRG	1 cut(s)	203
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	190, 271
BmrFI	CCNGG	2 cut(s)	193, 256
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	235, 355
BmuI	ACTGGG	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	193
BsaHI	GRCGYC	2 cut(s)	8, 132
BsaJI	CCNNGG	2 cut(s)	184, 273
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 185, 198, 255
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	436
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	184, 273
BseLI	CCNNNNNNNGG	4 cut(s)	62, 185, 198, 255
BseNI	ACTGG	1 cut(s)	436
BseSI	GKGCMC	2 cut(s)	122, 193
BseXI	GCAGC	2 cut(s)	355, 446
Bsh1236I	CGCG	3 cut(s)	32, 174, 186
BshFI	GGCC	4 cut(s)	55, 103, 230, 368
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	3 cut(s)	104, 193, 375
BslFI	GGGAC	2 cut(s)	220, 448
BslI	CCNNNNNNNGG	4 cut(s)	62, 185, 198, 255
BsmFI	GGGAC	2 cut(s)	220, 448
BsnI	GGCC	4 cut(s)	55, 103, 230, 368
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	3 cut(s)	122, 180, 193
Bsp143I	GATC	1 cut(s)	295
BspACI	CCGC	8 cut(s)	32, 52, 172, 184, 186, 231, 249, 252
BspANI	GGCC	4 cut(s)	55, 103, 230, 368
BspFNI	CGCG	3 cut(s)	32, 174, 186
BspLI	GGNNCC	2 cut(s)	190, 271
BspMAI	CTGCAG	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	188
BsrBI	CCGCTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	436
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	184, 273
BssMI	GATC	1 cut(s)	295
BssNI	GRCGYC	2 cut(s)	8, 132
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	269
BstACI	GRCGYC	2 cut(s)	8, 132
BstC8I	GCNNGC	6 cut(s)	45, 57, 176, 303, 376, 380
BstDSI	CCRYGG	1 cut(s)	184
BstFNI	CGCG	3 cut(s)	32, 174, 186
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	7 cut(s)	49, 58, 236, 245, 289, 298, 343
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	191, 254
BstSFI	CTRYAG	1 cut(s)	341
BstSLI	GKGCMC	2 cut(s)	122, 193
BstUI	CGCG	3 cut(s)	32, 174, 186
BstV1I	GCAGC	2 cut(s)	355, 446
BsuRI	GGCC	4 cut(s)	55, 103, 230, 368
BtgI	CCRYGG	1 cut(s)	184
BtrI	CACGTC	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	6 cut(s)	45, 57, 176, 303, 376, 380
CaiI	CAGNNNCTG	3 cut(s)	340, 431, 486
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	101
Cfr42I	CCGCGG	1 cut(s)	187
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	429, 483
CspCI	CAANNNNNGTGG	4 cut(s)	128, 163, 205, 240
CviAII	CATG	2 cut(s)	85, 447
CviQI	GTAC	2 cut(s)	429, 483
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
EaeI	YGGCCR	2 cut(s)	53, 366
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	88, 450
FaiI	YATR	7 cut(s)	86, 116, 243, 448, 453, 455, 457
FaqI	GGGAC	2 cut(s)	220, 448
FatI	CATG	2 cut(s)	84, 446
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	53, 231, 249, 252, 344, 460
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	6 cut(s)	53, 231, 249, 252, 344, 460
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	6 cut(s)	53, 231, 249, 252, 344, 460
HaeIII	GGCC	4 cut(s)	55, 103, 230, 368
HapII	CCGG	3 cut(s)	104, 193, 375
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	2 cut(s)	8, 132
Hin1II	CATG	2 cut(s)	88, 450
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	3 cut(s)	104, 193, 375
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	6, 120
Hpy188I	TCNGA	2 cut(s)	13, 396
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	2 cut(s)	6, 120
Hpy99I	CGWCG	3 cut(s)	10, 13, 367
HpyAV	CCTTC	2 cut(s)	70, 82
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	2 cut(s)	8, 146
HpyCH4V	TGCA	5 cut(s)	84, 120, 343, 446, 480
HpyF10VI	GCNNNNNNNGC	7 cut(s)	49, 58, 236, 245, 289, 298, 343
HpySE526I	ACGT	2 cut(s)	8, 146
Hsp92I	GRCGYC	2 cut(s)	8, 132
Hsp92II	CATG	2 cut(s)	88, 450
HspAI	GCGC	1 cut(s)	59
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
KspI	CCGCGG	1 cut(s)	187
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	467
Lsp1109I	GCAGC	2 cut(s)	355, 446
LweI	GCATC	2 cut(s)	235, 355
MaeII	ACGT	2 cut(s)	8, 146
MalI	GATC	1 cut(s)	297
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	1 cut(s)	295
MboII	GAAGA	1 cut(s)	49
MhlI	GDGCHC	3 cut(s)	122, 180, 193
MluCI	AATT	2 cut(s)	286, 390
MnlI	CCTC	5 cut(s)	92, 220, 229, 370, 396
MroNI	GCCGGC	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	3 cut(s)	104, 193, 375
MspR9I	CCNGG	2 cut(s)	193, 256
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	3 cut(s)	32, 174, 186
MwoI	GCNNNNNNNGC	7 cut(s)	49, 58, 236, 245, 289, 298, 343
NaeI	GCCGGC	1 cut(s)	376
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	1 cut(s)	295
NgoMIV	GCCGGC	1 cut(s)	374
NlaIII	CATG	2 cut(s)	88, 450
NlaIV	GGNNCC	2 cut(s)	190, 271
NspI	RCATGY	1 cut(s)	450
PaqCI	CACCTGC	1 cut(s)	348
PdiI	GCCGGC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	6 cut(s)	54, 232, 250, 253, 345, 461
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	2 cut(s)	190, 271
PspPI	GGNCC	1 cut(s)	101
PstI	CTGCAG	1 cut(s)	345
PstNI	CAGNNNCTG	3 cut(s)	340, 431, 486
RsaI	GTAC	2 cut(s)	430, 484
RsaNI	GTAC	2 cut(s)	429, 483
SacII	CCGCGG	1 cut(s)	187
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	6 cut(s)	53, 231, 249, 252, 344, 460
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	193, 256
SduI	GDGCHC	3 cut(s)	122, 180, 193
SfaNI	GCATC	2 cut(s)	235, 355
SfcI	CTRYAG	1 cut(s)	341
Sfr303I	CCGCGG	1 cut(s)	187
SgrBI	CCGCGG	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	2 cut(s)	286, 390
SsiI	CCGC	8 cut(s)	32, 52, 172, 184, 186, 231, 249, 252
StyD4I	CCNGG	2 cut(s)	191, 254
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	2 cut(s)	11, 149
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	286, 390
TauI	GCSGC	4 cut(s)	55, 233, 251, 254
TfiI	GAWTC	1 cut(s)	331
TseI	GCWGC	2 cut(s)	343, 459
TspDTI	ATGAA	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	1 cut(s)	450
XmiI	GTMKAC	1 cut(s)	5
ZraI	GACGTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.