AT1G76840

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
28846566 .. 28847288
723 bp
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UTR
Exon/CDS
Intron
AT1G76840.1

Sequence Viewer

Length: 531 bp
ATGGAAGGACAACGTGAAGAGAAAATTGAGCGAGACACAGTTTTAATATCTGCAGTTAAGGAGGACAAAGAGGAAGTATCATCACACTCTGTACTTTTTGTCAAGCGCTTATCACCTGCTTCAGTGCAAGTACCAGTGAGCAGCACTGAAGCTGAGCTAGTCGTGTCTACTGGCCGTTACCTTGTTAAGAATATCGTTTCAATATCTATTGCTGAGAAAACTACCAAAACTAAGAGAGAAACTCTTATTTGCACTCCTAGATCTGAGACAATCTTGGAAAACTCAGTTGAATGTTGGAAGGAGATTCACTCAAACAAAGATGATGATGTGAAAGAAGAAAGAATGGAGATAACTAAAGTCGGTTGTGCGAGTGTTGGTCATTGTCTGAATCTAACACCAGAAAAACTTATGGATGAGTACACTCAGTTGGAGCTAGAAGAAGCAGTCGGCACTAAAGTCAAGAGGCTCTTCCGAATAAATGAAGACAGTGAATCAAGAATTCGTAAAAGAAAAGCCACAAGGAATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.98

Weight (kDa)

6.04

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 124
Acc36I ACCTGC 1 cut(s) 124
AccI GTMKAC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 498
AcuI CTGAAG 2 cut(s) 105, 168
AfaI GTAC 3 cut(s) 93, 132, 419
AfeI AGCGCT 1 cut(s) 107
AgsI TTSAA 2 cut(s) 201, 290
AluBI AGCT 3 cut(s) 152, 157, 433
AluI AGCT 3 cut(s) 152, 157, 433
Alw26I GTCTC 2 cut(s) 27, 260
Aor51HI AGCGCT 1 cut(s) 107
AoxI GGCC 1 cut(s) 172
ApeKI GCWGC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 498
AspLEI GCGC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 105
BbsI GAAGAC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 27, 260
BfaI CTAG 3 cut(s) 158, 258, 434
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 124
BglII AGATCT 1 cut(s) 260
BisI GCNGC 1 cut(s) 142
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 489
BplI GAGNNNNNCTC 4 cut(s) 226, 258, 293, 325
Bpu1102I GCTNAGC 1 cut(s) 153
Bse1I ACTGG 2 cut(s) 134, 175
BseGI GGATG 1 cut(s) 418
BseMII CTCAG 5 cut(s) 144, 204, 255, 297, 437
BseNI ACTGG 2 cut(s) 134, 175
BseXI GCAGC 1 cut(s) 153
BshFI GGCC 1 cut(s) 174
BsmAI GTCTC 2 cut(s) 27, 260
BsnI GGCC 1 cut(s) 174
Bsp143I GATC 1 cut(s) 260
Bsp1720I GCTNAGC 1 cut(s) 153
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 5 cut(s) 145, 205, 256, 296, 436
BspMAI CTGCAG 1 cut(s) 55
BspMI ACCTGC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 473
BsrI ACTGG 2 cut(s) 134, 175
BssMI GATC 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 40, 488
Bst6I CTCTTC 2 cut(s) 12, 473
BstDEI CTNAG 6 cut(s) 153, 213, 231, 264, 283, 423
BstF5I GGATG 1 cut(s) 418
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 1 cut(s) 263
BstMAI GTCTC 2 cut(s) 27, 260
BstMBI GATC 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 489
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 4 cut(s) 129, 141, 144, 493
BveI ACCTGC 1 cut(s) 124
CfoI GCGC 1 cut(s) 108
Csp6I GTAC 3 cut(s) 92, 131, 418
CviJI RGCY 7 cut(s) 152, 157, 174, 433, 466, 515, 528
CviKI_1 RGCY 7 cut(s) 152, 157, 174, 433, 466, 515, 528
CviQI GTAC 3 cut(s) 92, 131, 418
DdeI CTNAG 6 cut(s) 153, 213, 231, 264, 283, 423
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 12, 473
EarI CTCTTC 2 cut(s) 12, 473
Eco47III AGCGCT 1 cut(s) 107
Eco57I CTGAAG 2 cut(s) 105, 168
EcoRI GAATTC 1 cut(s) 498
FaiI YATR 1 cut(s) 410
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 3 cut(s) 158, 258, 434
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 142
HaeII RGCGCY 1 cut(s) 109
HaeIII GGCC 1 cut(s) 174
HhaI GCGC 1 cut(s) 108
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 3 cut(s) 304, 388, 491
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 168, 420
Hpy188I TCNGA 3 cut(s) 265, 387, 473
Hpy188III TCNNGA 2 cut(s) 460, 495
Hpy8I GTNNAC 2 cut(s) 168, 420
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 2 cut(s) 40, 488
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 3 cut(s) 53, 127, 252
HpyF3I CTNAG 6 cut(s) 153, 213, 231, 264, 283, 423
HpySE526I ACGT 1 cut(s) 13
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 1 cut(s) 260
LguI GCTCTTC 1 cut(s) 473
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 4 cut(s) 129, 147, 156, 411
Lsp1109I GCAGC 1 cut(s) 153
MaeI CTAG 3 cut(s) 158, 258, 434
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 176
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 5 cut(s) 29, 347, 449, 460, 494
MflI RGATCY 1 cut(s) 260
MluCI AATT 2 cut(s) 24, 498
MmeI TCCRAC 2 cut(s) 275, 408
MnlI CCTC 3 cut(s) 55, 64, 456
MseI TTAA 3 cut(s) 44, 57, 186
NdeII GATC 1 cut(s) 260
PaqCI CACCTGC 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 473
PfeI GAWTC 3 cut(s) 304, 388, 491
PkrI GCNGC 1 cut(s) 143
PstI CTGCAG 1 cut(s) 55
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 3 cut(s) 93, 132, 419
RsaNI GTAC 3 cut(s) 92, 131, 418
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 3 cut(s) 44, 57, 186
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 1 cut(s) 260
SetI ASST 6 cut(s) 16, 118, 154, 159, 183, 435
SfcI CTRYAG 1 cut(s) 51
Sse9I AATT 2 cut(s) 24, 498
SspMI CTAG 3 cut(s) 158, 258, 434
TaaI ACNGT 2 cut(s) 40, 488
TaiI ACGT 1 cut(s) 16
TasI AATT 2 cut(s) 24, 498
TatI WGTACW 2 cut(s) 91, 417
TfiI GAWTC 3 cut(s) 304, 388, 491
Tru1I TTAA 3 cut(s) 44, 57, 186
Tru9I TTAA 3 cut(s) 44, 57, 186
TscAI CASTG 4 cut(s) 129, 141, 151, 493
TseI GCWGC 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 495
TspRI CASTG 4 cut(s) 129, 141, 151, 493
XapI RAATTY 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 3 cut(s) 158, 258, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.