Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001416

Physical Location & Seq

Genomic Coordinates Reverse (-)

35367685 .. 35368468

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAAGCAGGAAGAAGATGCAAATTCTTTGCTATCATTTGGTTATGTAGGTCCCAATACAGTGTCTTCAGAAAAAGTGGTTGGGTGTTCGAAAAGTAATATCGCTGCTGGTATTGAGGTTTCAAATCTGAGATTAAATGAAGCATCAAGTTCCAAGGATTCTACTTCTGATGAACTGAGTAGATGCAATCTTTGTGATGGTGCACTGGTTGATGCCAGTAGAGACAATAATGTTGTTGCAGACAAAGTTAGTACTAGAAGTATGGAAGCAATAATTGGTATTAAGAATGCTGGTGATGGGGTTAAGTCGGTAGAAAAAACGCTGCAAATATTGGATGCTGACGGTCTATTAGACGAAAGAGACTCTTCATATGGCAAATCATTTTCTGATATTTCTCATACCATGAAAGAAAGCGGTGTTTTTAAAAAGAGACATCTGTCTGTGCAAGAAGGTAGAGGCTTGAAGGCAGGAAGAGTCTCAGGCTTGAAGTTTGAAAGTGTAAATGCTGGCATAGATGGTTTTGCGGATACTCCTGCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.05

Weight (kDa)

5.13

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76840
fragaria_vesca	FvH4_2g13360 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370
rosa_chinensis	RchiOBHm_Chr6g0274911
rosa_laevigata	RLG00000013508 RLG00000013512
rosa_multiflora	Rmu_sc0007760.1_g000001 Rmu_sc0020413.1_g000002 Rmu_sc0042123.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193800 Rroxscaffold_7G00193810 Rroxscaffold_7G00193840
rosa_rugosa	Rorug06G0085700 Rorug06G0085800 Rorug06G0085900 Rorug06G0086000 Rorug06G0086100 Rorug06G0086300
rosa_samantha	Rh6AG200800 Rh6AG201100 Rh6AG201200 Rh6BG204500 Rh6BG204800 Rh6CG205900 Rh6CG206100 Rh6CG206200 Rh6DG196100 Rh6DG196300 Rh7BG146800
rosa_wichuraiana	Rw6G017480 Rw6G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	414, 524
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	1 cut(s)	253
AgsI	TTSAA	4 cut(s)	123, 463, 487, 494
AjuI	GAANNNNNNNTTGG	4 cut(s)	63, 95, 258, 290
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	4 cut(s)	216, 354, 424, 481
Alw44I	GTGCAC	1 cut(s)	201
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	4 cut(s)	104, 322, 536, 539
ApoI	RAATTY	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	305
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	4 cut(s)	91, 309, 523, 526
BccI	CCATC	3 cut(s)	191, 290, 509
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	4 cut(s)	216, 354, 424, 481
BfaI	CTAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	4 cut(s)	105, 323, 537, 540
BlsI	GCNGC	4 cut(s)	106, 324, 538, 541
BmcAI	AGTACT	1 cut(s)	253
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	52
BmsI	GCATC	5 cut(s)	7, 152, 173, 202, 325
BoxI	GACNNNNGTC	1 cut(s)	436
BpiI	GAAGAC	1 cut(s)	57
Bpu14I	TTCGAA	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	153
Bse1I	ACTGG	2 cut(s)	210, 216
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	340
BseMII	CTCAG	3 cut(s)	119, 167, 492
BseNI	ACTGG	2 cut(s)	210, 216
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	4 cut(s)	91, 309, 523, 526
BsiHKAI	GWGCWC	1 cut(s)	205
BslFI	GGGAC	1 cut(s)	36
BsmAI	GTCTC	4 cut(s)	216, 354, 424, 481
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	292
Bsp119I	TTCGAA	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	414, 524
BspCNI	CTCAG	3 cut(s)	120, 168, 491
BspLI	GGNNCC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	210, 216
BssECI	CCNNGG	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	61, 344
Bst6I	CTCTTC	2 cut(s)	370, 466
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	3 cut(s)	128, 176, 478
BstF5I	GGATG	1 cut(s)	340
BstMAI	GTCTC	4 cut(s)	216, 354, 424, 481
BstPAI	GACNNNNGTC	1 cut(s)	436
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	4 cut(s)	91, 309, 523, 526
BstV2I	GAAGAC	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	66, 203
Cac8I	GCNNGC	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	2 cut(s)	459, 483
CviKI_1	RGCY	2 cut(s)	459, 483
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	3 cut(s)	128, 176, 478
DraI	TTTAAA	1 cut(s)	424
Eam1104I	CTCTTC	2 cut(s)	370, 466
EarI	CTCTTC	2 cut(s)	370, 466
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	406
FaiI	YATR	7 cut(s)	45, 263, 370, 372, 399, 404, 512
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	1 cut(s)	402
FauNDI	CATATG	1 cut(s)	370
Fnu4HI	GCNGC	4 cut(s)	105, 323, 537, 540
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	4 cut(s)	105, 323, 537, 540
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	4 cut(s)	105, 323, 537, 540
Hin1II	CATG	1 cut(s)	406
HinfI	GANTC	3 cut(s)	158, 362, 474
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	4 cut(s)	70, 129, 169, 388
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	443, 457
HpyCH4III	ACNGT	2 cut(s)	61, 344
HpyCH4V	TGCA	6 cut(s)	20, 186, 203, 239, 325, 445
HpyF3I	CTNAG	3 cut(s)	128, 176, 478
Hsp92II	CATG	1 cut(s)	406
LpnPI	CCDG	7 cut(s)	93, 191, 229, 276, 453, 465, 492
Lsp1109I	GCAGC	4 cut(s)	91, 309, 523, 526
LweI	GCATC	5 cut(s)	7, 152, 173, 202, 325
MaeI	CTAG	1 cut(s)	255
MboII	GAAGA	5 cut(s)	23, 26, 57, 357, 483
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	2 cut(s)	22, 273
MlyI	GAGTC	2 cut(s)	356, 483
MnlI	CCTC	2 cut(s)	109, 449
MseI	TTAA	4 cut(s)	134, 282, 303, 423
Mva1269I	GAATGC	1 cut(s)	292
NdeI	CATATG	1 cut(s)	370
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	1 cut(s)	52
NspV	TTCGAA	1 cut(s)	89
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	106, 324, 538, 541
PleI	GAGTC	2 cut(s)	356, 482
PpsI	GAGTC	2 cut(s)	356, 482
PpuMI	RGGWCCY	1 cut(s)	50
PshAI	GACNNNNGTC	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SaqAI	TTAA	4 cut(s)	134, 282, 303, 423
SatI	GCNGC	4 cut(s)	105, 323, 537, 540
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	2 cut(s)	356, 483
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	3 cut(s)	52, 120, 454
SfaNI	GCATC	5 cut(s)	7, 152, 173, 202, 325
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	2 cut(s)	22, 273
SsiI	CCGC	2 cut(s)	414, 524
SspI	AATATT	1 cut(s)	330
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	61, 344
TaqI	TCGA	1 cut(s)	89
TasI	AATT	2 cut(s)	22, 273
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	4 cut(s)	134, 282, 303, 423
Tru9I	TTAA	4 cut(s)	134, 282, 303, 423
TscAI	CASTG	2 cut(s)	66, 210
TseI	GCWGC	4 cut(s)	104, 322, 536, 539
TspDTI	ATGAA	5 cut(s)	17, 153, 186, 357, 419
TspRI	CASTG	2 cut(s)	66, 210
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	22
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.