Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001416

Physical Location & Seq

Genomic Coordinates Forward (+)

34722712 .. 34724527

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTGATGAAGCAGGAAGAAGATGCAAATTCTTTGCTATCATTTGGTTATGTAAGTCCCAATACAGTGTCTTCAGAAAAAGTGGTTGGTTTGAAAAGTAATATTGCTGCTGGTATTGAGGTTTCAAATCTGAGATTAAATGAAGCATCAAGTTCCAAGGATTCTACTTCTGATGAACAGAGCGGTGTTTTTAAAAAGAGACATCCGTCTGTGCAAGAAGGTAGAGGCTTGAAGGCAGGGAGAGTCTCAGGCTTGAAGTTCGAAGGGGAACTTAGTGGGCATAAGCTTCAACTGAGAGAAGTTGTGAAGCTGAAATCCACTCAGAAATTGGGTATTCATTGCCATCAATGTTATCCTGTTACTGAGTGTTCTAGTCATGCAAAACTGGATTCAATCAGAGAAAGAGCTCTAGAGGCAGATTTGGAGAAAAGAATTAGTATTTCTACTACACCAAGTCGGAAGAAGAACAGAGATATTTTTGTCCCTAGAACTCCAAAGAATCTTATCAATAAGTCTGATATGAAGGAAAACTTCAGTGCCAGAAAGAGTGAACCAGTAACAAACATCACTTCAGTAAAACCTCTGCACGGACAGGCGAGCATTGGAGGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

22.41

Weight (kDa)

9.6

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76840
fragaria_vesca	FvH4_2g13360 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370
rosa_chinensis	RchiOBHm_Chr6g0274911
rosa_laevigata	RLG00000013508 RLG00000013512
rosa_multiflora	Rmu_sc0007760.1_g000001 Rmu_sc0020413.1_g000002 Rmu_sc0042123.1_g000001
rosa_roxburghii	Rroxscaffold_7G00193800 Rroxscaffold_7G00193810 Rroxscaffold_7G00193840
rosa_rugosa	Rorug06G0085700 Rorug06G0085800 Rorug06G0085900 Rorug06G0086000 Rorug06G0086100 Rorug06G0086300
rosa_samantha	Rh6AG200800 Rh6AG201100 Rh6AG201200 Rh6BG204500 Rh6BG204800 Rh6CG205900 Rh6CG206100 Rh6CG206200 Rh6DG196100 Rh6DG196300 Rh7BG146800
rosa_wichuraiana	Rw6G017480 Rw6G017500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	183
AciI	CCGC	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	3 cut(s)	57, 517, 555
AfiI	CCNNNNNNNGG	1 cut(s)	587
AgsI	TTSAA	6 cut(s)	94, 126, 232, 256, 290, 393
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	3 cut(s)	286, 310, 407
AluI	AGCT	3 cut(s)	286, 310, 407
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	2 cut(s)	193, 250
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	193, 250
BfaI	CTAG	3 cut(s)	372, 410, 486
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BmsI	GCATC	2 cut(s)	13, 155
BoxI	GACNNNNGTC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	2 cut(s)	390, 554
Bse3DI	GCAATG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	5 cut(s)	122, 261, 284, 335, 354
BseNI	ACTGG	2 cut(s)	390, 554
BseXI	GCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	409
BslFI	GGGAC	2 cut(s)	42, 467
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	2 cut(s)	193, 250
BsmFI	GGGAC	2 cut(s)	42, 467
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	409
BspACI	CCGC	1 cut(s)	183
BspCNI	CTCAG	5 cut(s)	123, 260, 285, 334, 355
BspT104I	TTCGAA	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	390, 554
BssECI	CCNNGG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	6 cut(s)	131, 247, 272, 293, 321, 363
BstF5I	GGATG	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	193, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstPAI	GACNNNNGTC	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	94
BstV2I	GAAGAC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	2 cut(s)	72, 541
Cac8I	GCNNGC	1 cut(s)	598
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	5 cut(s)	228, 252, 286, 310, 407
CviKI_1	RGCY	5 cut(s)	228, 252, 286, 310, 407
DdeI	CTNAG	6 cut(s)	131, 247, 272, 293, 321, 363
DraI	TTTAAA	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	407
Eco57I	CTGAAG	3 cut(s)	57, 517, 555
EcoICRI	GAGCTC	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	1 cut(s)	380
FaiI	YATR	4 cut(s)	51, 282, 378, 521
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 515, 547
FaqI	GGGAC	2 cut(s)	42, 467
FatI	CATG	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	3 cut(s)	372, 410, 486
GluI	GCNGC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	380
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	4 cut(s)	161, 243, 389, 499
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	7 cut(s)	76, 132, 172, 324, 398, 459, 517
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	1 cut(s)	551
HpyAV	CCTTC	4 cut(s)	212, 226, 257, 517
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	26, 214, 380, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	6 cut(s)	131, 247, 272, 293, 321, 363
Hsp92II	CATG	1 cut(s)	380
LpnPI	CCDG	8 cut(s)	96, 222, 234, 369, 371, 553, 567, 578
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	2 cut(s)	13, 155
MaeI	CTAG	3 cut(s)	372, 410, 486
MaeIII	GTNAC	2 cut(s)	358, 556
MbiI	CCGCTC	1 cut(s)	183
MboII	GAAGA	5 cut(s)	29, 32, 63, 472, 475
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	3 cut(s)	28, 326, 432
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	437
MnlI	CCTC	5 cut(s)	112, 218, 406, 591, 599
MseI	TTAA	3 cut(s)	137, 192, 613
MwoI	GCNNNNNNNGC	1 cut(s)	413
NlaIII	CATG	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	161, 389, 499
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PshAI	GACNNNNGTC	1 cut(s)	205
Psp124BI	GAGCTC	1 cut(s)	409
SacI	GAGCTC	1 cut(s)	409
SaqAI	TTAA	3 cut(s)	137, 192, 613
SatI	GCNGC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	6 cut(s)	123, 223, 288, 312, 409, 583
SfaNI	GCATC	2 cut(s)	13, 155
SfuI	TTCGAA	1 cut(s)	261
Sse9I	AATT	3 cut(s)	28, 326, 432
SsiI	CCGC	1 cut(s)	183
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	3 cut(s)	372, 410, 486
SstI	GAGCTC	1 cut(s)	409
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	261
TasI	AATT	3 cut(s)	28, 326, 432
TfiI	GAWTC	3 cut(s)	161, 389, 499
Tru1I	TTAA	3 cut(s)	137, 192, 613
Tru9I	TTAA	3 cut(s)	137, 192, 613
TscAI	CASTG	2 cut(s)	72, 541
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	5 cut(s)	23, 156, 189, 326, 536
TspGWI	ACGGA	2 cut(s)	195, 603
TspRI	CASTG	2 cut(s)	72, 541
XapI	RAATTY	1 cut(s)	28
XbaI	TCTAGA	1 cut(s)	409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XspI	CTAG	3 cut(s)	372, 410, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.