Rorug06G0085700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001416
Physical Location & Seq
Reverse (-)
11522103 .. 11523663
1561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0085700.1

Sequence Viewer

Length: 1182 bp
ATGCCAAAGGACCCTAACTCAACTAAAAAGATCAGAAAGCAAAGCCAACGAAAGAAAGATCATCATGTTCAGAACCCCATGGCCGTGGACGATGTTATCCATCAAATTCTCCCTCTCCTTCCCACCAAATCTGCCGTCCGAATGAGCTCTCTTTCAAAGCAATGGCAAGCTGTATGGTTTTCCCTCTCTATATTAGATTTCGATGAAGGCGATCCGGCGCATGATAGTGACAATAAGCTTGAGAAACTTCAACATACAAACTTCATCAACATCTTGGATAGTTTGGAGTTTGTGAGAATAAAGGTGGATGACAATACTAGTTATTACCTTGAAACCCTTCCGTCTTTGAAAAGTTTGTCACTCAAGAGTGTACAACTGATTTCAGAGGCTTTGTCGCTTTTAGTTTCGGGTTGCCCTTCGATTGAGTATTTGTCACTATGCTCATGTTCTAGTTTCCATGGCTCGATGATATTGCAACTTGAAGTTTCTAGTGTTGCAAAATCTTTAACTACTTTAAATTTGGAGTTTTTGAAAGTAAAGGTGGATTGCAATACTAGTGATGACCTTGAGATCTTTCCGTCTTTGAAAACTATGTCCCTCGAGAGTGTGCAACTGACTTCCAAGACTTTGTCCCGTTTCATTTCCAGATGCCCTTCCATTGAGTATCTGTCACTATCTGCATGTTCTAATTTCAATGGCTCAGAGATGTTGCAACTTGAAGTTTCGAGTTCGAGTCTCAAAGCCTTGTATATTACTAATTGCAGTTGCCATGATGTTAATATATTCAAATGCAGAAACTTGAAGTATATCAACATCCGCACACATCGCCTGTGTTGTTTGCGATTGTGGAGTTGTGGAAATTCTGTAAAAGAGACCACAATGGATATTCCACAATGTCTAGAGCAGGCTGATATCCATCTTTTGGACGAAGAAGCTGCCTTCAAGGAGACAATGGATTTCAAAGCTTGCAAAAAATTATTCCTACATGTTGGTGATGCTGGGGCTCTCATATTTCCAGAAAATTTCAGAAACACTTCTTCTCCACCAGTACCTTGTCTCCTTAATGTCCAGGTGCGTATTGAATCTCCGAAAGATGCGAGAGATTCCGACTTGAGGGACGCATTGAAATGGATGGCACGGTCTCCACTGATTGAAACAATACAGTACCAAAACGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

393

Amino Acids

44.4

Weight (kDa)

6.09

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 167 - 267 1.7e-09 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 922
AciI CCGC 1 cut(s) 817
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 4 cut(s) 105, 517, 859, 1021
AfaI GTAC 3 cut(s) 372, 1050, 1166
AfiI CCNNNNNNNGG 2 cut(s) 922, 1113
AflIII ACRYGT 1 cut(s) 985
AhlI ACTAGT 2 cut(s) 317, 554
AjnI CCWGG 1 cut(s) 1068
AluBI AGCT 5 cut(s) 147, 170, 238, 935, 965
AluI AGCT 5 cut(s) 147, 170, 238, 935, 965
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 5 cut(s) 740, 866, 941, 1061, 1146
AlwI GGATC 1 cut(s) 206
Ama87I CYCGRG 1 cut(s) 599
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 935
ApoI RAATTY 4 cut(s) 105, 517, 859, 1021
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
Asp700I GAANNNNTTC 2 cut(s) 336, 1033
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 1004
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 1 cut(s) 10
BanII GRGCYC 2 cut(s) 149, 1006
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 922
BccI CCATC 3 cut(s) 108, 924, 1126
BceAI ACGGC 2 cut(s) 68, 119
BcgI CGANNNNNNTGC 4 cut(s) 454, 488, 917, 951
BciT130I CCWGG 1 cut(s) 1070
BcoDI GTCTC 5 cut(s) 740, 866, 941, 1061, 1146
BcuI ACTAGT 2 cut(s) 317, 554
BfaI CTAG 5 cut(s) 318, 450, 489, 555, 899
BglII AGATCT 1 cut(s) 570
BisI GCNGC 1 cut(s) 936
BlsI GCNGC 1 cut(s) 937
Bme1390I CCNGG 1 cut(s) 1070
Bme18I GGWCC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 1070
BmsI GCATC 3 cut(s) 638, 985, 1084
BpuEI CTTGAG 4 cut(s) 260, 347, 587, 1132
BsaBI GATNNNNATC 1 cut(s) 915
BsaI GGTCTC 2 cut(s) 866, 1146
BsaJI CCNNGG 3 cut(s) 78, 84, 457
BsaXI ACNNNNNCTCC 4 cut(s) 1024, 1041, 1054, 1071
Bsc4I CCNNNNNNNGG 2 cut(s) 922, 1113
Bse1I ACTGG 1 cut(s) 1046
Bse3DI GCAATG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 1 cut(s) 1070
BseDI CCNNGG 3 cut(s) 78, 84, 457
BseGI GGATG 3 cut(s) 313, 813, 1137
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 2 cut(s) 922, 1113
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 714
BseNI ACTGG 1 cut(s) 1046
BseXI GCAGC 1 cut(s) 922
BseYI CCCAGC 1 cut(s) 998
BshFI GGCC 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 3 cut(s) 580, 616, 1130
BslI CCNNNNNNNGG 2 cut(s) 922, 1113
BsmAI GTCTC 5 cut(s) 740, 866, 941, 1061, 1146
BsmFI GGGAC 3 cut(s) 580, 616, 1130
BsnI GGCC 1 cut(s) 83
Bso31I GGTCTC 2 cut(s) 866, 1146
BsoBI CYCGRG 1 cut(s) 599
Bsp1286I GDGCHC 2 cut(s) 149, 1006
Bsp1407I TGTACA 1 cut(s) 370
Bsp143I GATC 4 cut(s) 30, 58, 211, 570
Bsp19I CCATGG 2 cut(s) 78, 457
BspACI CCGC 1 cut(s) 817
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 713
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 1 cut(s) 206
BspTNI GGTCTC 2 cut(s) 866, 1146
BsrDI GCAATG 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 370
BsrI ACTGG 1 cut(s) 1046
BssECI CCNNGG 3 cut(s) 78, 84, 457
BssMI GATC 4 cut(s) 30, 58, 211, 570
BssT1I CCWWGG 2 cut(s) 78, 457
Bst2UI CCWGG 1 cut(s) 1070
Bst4CI ACNGT 2 cut(s) 1140, 1164
BstAUI TGTACA 1 cut(s) 370
BstC8I GCNNGC 3 cut(s) 168, 906, 967
BstDEI CTNAG 1 cut(s) 700
BstDSI CCRYGG 3 cut(s) 78, 84, 457
BstF5I GGATG 3 cut(s) 313, 813, 1137
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 4 cut(s) 33, 61, 214, 573
BstMAI GTCTC 5 cut(s) 740, 866, 941, 1061, 1146
BstMBI GATC 4 cut(s) 30, 58, 211, 570
BstMWI GCNNNNNNNGC 1 cut(s) 825
BstNI CCWGG 1 cut(s) 1070
BstNSI RCATGY 2 cut(s) 684, 989
BstSCI CCNGG 1 cut(s) 1068
BstV1I GCAGC 1 cut(s) 922
BstX2I RGATCY 1 cut(s) 570
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 1 cut(s) 570
BsuRI GGCC 1 cut(s) 83
BtgI CCRYGG 3 cut(s) 78, 84, 457
BtgZI GCGATG 1 cut(s) 809
BtsCI GGATG 3 cut(s) 313, 813, 1137
BtsIMutI CAGTG 1 cut(s) 1145
Cac8I GCNNGC 3 cut(s) 168, 906, 967
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 10
CseI GACGC 1 cut(s) 1127
Csp6I GTAC 3 cut(s) 371, 1049, 1165
CviAII CATG 8 cut(s) 65, 79, 221, 444, 458, 681, 770, 986
CviQI GTAC 3 cut(s) 371, 1049, 1165
DdeI CTNAG 1 cut(s) 700
DpnI GATC 4 cut(s) 32, 60, 213, 572
DpnII GATC 4 cut(s) 30, 58, 211, 570
DraI TTTAAA 1 cut(s) 516
EaeI YGGCCR 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 78, 457
Eco24I GRGCYC 2 cut(s) 149, 1006
Eco31I GGTCTC 2 cut(s) 866, 1146
Eco32I GATATC 1 cut(s) 913
Eco47I GGWCC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 599
EcoICRI GAGCTC 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 1068
EcoRV GATATC 1 cut(s) 913
EcoT14I CCWWGG 2 cut(s) 78, 457
EcoT38I GRGCYC 2 cut(s) 149, 1006
ErhI CCWWGG 2 cut(s) 78, 457
FaeI CATG 8 cut(s) 68, 82, 224, 447, 461, 684, 773, 989
FaqI GGGAC 3 cut(s) 580, 616, 1130
FatI CATG 8 cut(s) 64, 78, 220, 443, 457, 680, 769, 985
Fnu4HI GCNGC 1 cut(s) 936
FokI GGATG 3 cut(s) 320, 800, 1144
FriOI GRGCYC 2 cut(s) 149, 1006
Fsp4HI GCNGC 1 cut(s) 936
FspBI CTAG 5 cut(s) 318, 450, 489, 555, 899
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 936
GsaI CCCAGC 1 cut(s) 1002
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 215
HgaI GACGC 1 cut(s) 1127
HhaI GCGC 1 cut(s) 220
Hin1II CATG 8 cut(s) 68, 82, 224, 447, 461, 684, 773, 989
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HindIII AAGCTT 2 cut(s) 236, 963
HinfI GANTC 3 cut(s) 733, 1082, 1103
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 1004
Hpy166II GTNNAC 2 cut(s) 88, 371
Hpy188I TCNGA 8 cut(s) 35, 72, 140, 385, 703, 1028, 1089, 1108
Hpy188III TCNNGA 5 cut(s) 364, 601, 645, 899, 1016
Hpy8I GTNNAC 2 cut(s) 88, 371
HpyAV CCTTC 6 cut(s) 128, 200, 347, 426, 663, 949
HpyCH4III ACNGT 2 cut(s) 1140, 1164
HpyCH4V TGCA 9 cut(s) 475, 497, 549, 610, 680, 712, 762, 792, 969
HpyF10VI GCNNNNNNNGC 1 cut(s) 825
HpyF3I CTNAG 1 cut(s) 700
Hsp92II CATG 8 cut(s) 68, 82, 224, 447, 461, 684, 773, 989
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 4 cut(s) 30, 58, 211, 570
LpnPI CCDG 9 cut(s) 228, 658, 842, 890, 984, 1029, 1055, 1059, 1082
Lsp1109I GCAGC 1 cut(s) 922
LweI GCATC 3 cut(s) 638, 985, 1084
MaeI CTAG 5 cut(s) 318, 450, 489, 555, 899
MaeIII GTNAC 4 cut(s) 227, 357, 432, 669
MalI GATC 4 cut(s) 32, 60, 213, 572
MboI GATC 4 cut(s) 30, 58, 211, 570
MboII GAAGA 2 cut(s) 941, 1029
MflI RGATCY 1 cut(s) 570
MhlI GDGCHC 2 cut(s) 149, 1006
MluCI AATT 7 cut(s) 105, 517, 688, 757, 859, 974, 1021
MlyI GAGTC 1 cut(s) 742
MmeI TCCRAC 1 cut(s) 1131
MnlI CCTC 5 cut(s) 123, 194, 379, 608, 1107
MroXI GAANNNNTTC 2 cut(s) 336, 1033
MseI TTAA 4 cut(s) 506, 515, 777, 1062
MslI CAYNNNNRTG 4 cut(s) 83, 225, 990, 1126
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 1070
MvaI CCWGG 1 cut(s) 1070
MwoI GCNNNNNNNGC 1 cut(s) 825
NcoI CCATGG 2 cut(s) 78, 457
NdeII GATC 4 cut(s) 30, 58, 211, 570
NlaIII CATG 8 cut(s) 68, 82, 224, 447, 461, 684, 773, 989
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 4 cut(s) 227, 357, 432, 669
NspI RCATGY 2 cut(s) 684, 989
PaeR7I CTCGAG 1 cut(s) 599
PciI ACATGT 1 cut(s) 985
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PdmI GAANNNNTTC 2 cut(s) 336, 1033
PfeI GAWTC 2 cut(s) 1082, 1103
PflFI GACNNNGTC 1 cut(s) 628
PflMI CCANNNNNTGG 1 cut(s) 922
PkrI GCNGC 1 cut(s) 937
PleI GAGTC 1 cut(s) 741
PpsI GAGTC 1 cut(s) 741
PpuMI RGGWCCY 1 cut(s) 10
PscI ACATGT 1 cut(s) 985
Psp124BI GAGCTC 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 1068
PspFI CCCAGC 1 cut(s) 998
PspGI CCWGG 1 cut(s) 1068
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 10
PspPPI RGGWCCY 1 cut(s) 10
PsuI RGATCY 1 cut(s) 570
PsyI GACNNNGTC 1 cut(s) 628
RsaI GTAC 3 cut(s) 372, 1050, 1166
RsaNI GTAC 3 cut(s) 371, 1049, 1165
RseI CAYNNNNRTG 4 cut(s) 83, 225, 990, 1126
SacI GAGCTC 1 cut(s) 149
SaqAI TTAA 4 cut(s) 506, 515, 777, 1062
SatI GCNGC 1 cut(s) 936
Sau3AI GATC 4 cut(s) 30, 58, 211, 570
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 1 cut(s) 1070
SduI GDGCHC 2 cut(s) 149, 1006
SfaNI GCATC 3 cut(s) 638, 985, 1084
Sfr274I CTCGAG 1 cut(s) 599
SinI GGWCC 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 599
SmiMI CAYNNNNRTG 4 cut(s) 83, 225, 990, 1126
SmlI CTYRAG 5 cut(s) 239, 362, 566, 599, 1111
SmoI CTYRAG 5 cut(s) 239, 362, 566, 599, 1111
SpeI ACTAGT 2 cut(s) 317, 554
Sse9I AATT 7 cut(s) 105, 517, 688, 757, 859, 974, 1021
SsiI CCGC 1 cut(s) 817
SspMI CTAG 5 cut(s) 318, 450, 489, 555, 899
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 1068
StyI CCWWGG 2 cut(s) 78, 457
TaaI ACNGT 2 cut(s) 1140, 1164
TaqI TCGA 6 cut(s) 201, 419, 464, 600, 725, 731
TasI AATT 7 cut(s) 105, 517, 688, 757, 859, 974, 1021
TatI WGTACW 1 cut(s) 370
TfiI GAWTC 2 cut(s) 1082, 1103
Tru1I TTAA 4 cut(s) 506, 515, 777, 1062
Tru9I TTAA 4 cut(s) 506, 515, 777, 1062
TscAI CASTG 1 cut(s) 1152
TseFI GTSAC 4 cut(s) 227, 357, 432, 669
TseI GCWGC 1 cut(s) 935
Tsp45I GTSAC 4 cut(s) 227, 357, 432, 669
TspDTI ATGAA 3 cut(s) 219, 253, 628
TspGWI ACGGA 2 cut(s) 330, 567
TspRI CASTG 1 cut(s) 1152
Tth111I GACNNNGTC 1 cut(s) 628
Van91I CCANNNNNTGG 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 4 cut(s) 105, 517, 859, 1021
XbaI TCTAGA 1 cut(s) 898
XceI RCATGY 2 cut(s) 684, 989
XhoI CTCGAG 1 cut(s) 599
XmnI GAANNNNTTC 2 cut(s) 336, 1033
XspI CTAG 5 cut(s) 318, 450, 489, 555, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.