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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G76840 |
| fragaria_vesca | FvH4_2g13360 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 FvH4_2g13370 |
| rosa_chinensis | RchiOBHm_Chr6g0274911 |
| rosa_laevigata | RLG00000013508 RLG00000013512 |
| rosa_multiflora | Rmu_sc0007760.1_g000001 Rmu_sc0020413.1_g000002 Rmu_sc0042123.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00193800 Rroxscaffold_7G00193810 Rroxscaffold_7G00193840 |
| rosa_rugosa | Rorug06G0085700 Rorug06G0085800 Rorug06G0085900 Rorug06G0086000 Rorug06G0086100 Rorug06G0086300 |
| rosa_samantha | Rh6AG200800 Rh6AG201100 Rh6AG201200 Rh6BG204500 Rh6BG204800 Rh6CG205900 Rh6CG206100 Rh6CG206200 Rh6DG196100 Rh6DG196300 Rh7BG146800 |
| rosa_wichuraiana | Rw6G017480 Rw6G017500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 136 |
| Acc36I | ACCTGC | 2 cut(s) | 136, 1234 |
| Acc65I | GGTACC | 1 cut(s) | 862 |
| AccB1I | GGYRCC | 5 cut(s) | 655, 734, 862, 2893, 5288 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 5584, 5957 |
| AccBSI | CCGCTC | 1 cut(s) | 4904 |
| AccI | GTMKAC | 1 cut(s) | 4099 |
| AccII | CGCG | 1 cut(s) | 14 |
| AcoI | YGGCCR | 3 cut(s) | 87, 3982, 4398 |
| AcuI | CTGAAG | 9 cut(s) | 1092, 1510, 1929, 2103, 2238, 2328, 2361, 3270, 3597 |
| AdeI | CACNNNGTG | 1 cut(s) | 2890 |
| AfeI | AGCGCT | 1 cut(s) | 39 |
| AflII | CTTAAG | 1 cut(s) | 110 |
| AflIII | ACRYGT | 2 cut(s) | 2072, 5033 |
| AhlI | ACTAGT | 2 cut(s) | 4697, 5909 |
| AjnI | CCWGG | 6 cut(s) | 475, 1081, 2108, 2232, 4021, 5244 |
| Alw21I | GWGCWC | 3 cut(s) | 576, 4962, 6301 |
| Alw44I | GTGCAC | 1 cut(s) | 4958 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 455, 1319, 4640 |
| Ama87I | CYCGRG | 1 cut(s) | 4760 |
| Aor51HI | AGCGCT | 1 cut(s) | 39 |
| AoxI | GGCC | 5 cut(s) | 87, 3354, 3982, 4398, 5796 |
| ApaLI | GTGCAC | 1 cut(s) | 4958 |
| AseI | ATTAAT | 1 cut(s) | 1488 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 808, 2223, 2268, 3082 |
| Asp718I | GGTACC | 1 cut(s) | 862 |
| AspLEI | GCGC | 2 cut(s) | 40, 644 |
| AspS9I | GGNCC | 5 cut(s) | 696, 1443, 3147, 3354, 4019 |
| AsuC2I | CCSGG | 1 cut(s) | 1629 |
| AsuNHI | GCTAGC | 1 cut(s) | 4253 |
| AvaI | CYCGRG | 1 cut(s) | 4760 |
| AvaII | GGWCC | 4 cut(s) | 696, 1443, 3147, 4019 |
| BaeGI | GKGCMC | 3 cut(s) | 2197, 2515, 4962 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 3629, 3662, 4941, 4974 |
| BalI | TGGCCA | 2 cut(s) | 3984, 4400 |
| BamHI | GGATCC | 1 cut(s) | 4210 |
| BanI | GGYRCC | 5 cut(s) | 655, 734, 862, 2893, 5288 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4836, 4868 |
| BbsI | GAAGAC | 3 cut(s) | 1316, 2349, 5205 |
| Bbv12I | GWGCWC | 3 cut(s) | 576, 4962, 6301 |
| BbvCI | CCTCAGC | 1 cut(s) | 2550 |
| BceAI | ACGGC | 2 cut(s) | 922, 3556 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 41, 75 |
| BciT130I | CCWGG | 6 cut(s) | 477, 1083, 2110, 2234, 4023, 5246 |
| BciVI | GTATCC | 4 cut(s) | 1576, 2662, 3712, 4942 |
| BclI | TGATCA | 7 cut(s) | 1588, 1807, 2296, 2881, 3565, 4875, 6204 |
| BcnI | CCSGG | 1 cut(s) | 1629 |
| BcuI | ACTAGT | 2 cut(s) | 4697, 5909 |
| BfoI | RGCGCY | 2 cut(s) | 41, 645 |
| BfrI | CTTAAG | 1 cut(s) | 110 |
| BfuAI | ACCTGC | 2 cut(s) | 136, 1234 |
| BfuI | GTATCC | 4 cut(s) | 1576, 2662, 3712, 4942 |
| BglII | AGATCT | 4 cut(s) | 986, 1124, 5086, 6066 |
| BmcAI | AGTACT | 1 cut(s) | 5488 |
| Bme1390I | CCNGG | 7 cut(s) | 477, 1083, 1629, 2110, 2234, 4023, 5246 |
| Bme18I | GGWCC | 4 cut(s) | 696, 1443, 3147, 4019 |
| BmeT110I | CYCGRG | 1 cut(s) | 4760 |
| BmgT120I | GGNCC | 5 cut(s) | 696, 1443, 3147, 3354, 4019 |
| BmrFI | CCNGG | 7 cut(s) | 477, 1083, 1629, 2110, 2234, 4023, 5246 |
| BmrI | ACTGGG | 2 cut(s) | 1610, 1953 |
| BmtI | GCTAGC | 1 cut(s) | 4257 |
| BmuI | ACTGGG | 2 cut(s) | 1610, 1953 |
| BoxI | GACNNNNGTC | 1 cut(s) | 5671 |
| BpiI | GAAGAC | 3 cut(s) | 1316, 2349, 5205 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 4496, 4528, 4667, 4699 |
| BpmI | CTGGAG | 5 cut(s) | 4044, 4617, 5289, 6131, 6323 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2178, 2550, 4905 |
| BpuEI | CTTGAG | 3 cut(s) | 2775, 4181, 6006 |
| BpuMI | CCSGG | 1 cut(s) | 1629 |
| Bsa29I | ATCGAT | 2 cut(s) | 1696, 3259 |
| BsaAI | YACGTR | 1 cut(s) | 1673 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1587, 1750, 3315 |
| BsaI | GGTCTC | 3 cut(s) | 432, 2749, 4763 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 143, 173, 4362, 4392, 5287, 5317 |
| Bse118I | RCCGGY | 1 cut(s) | 793 |
| Bse3DI | GCAATG | 5 cut(s) | 2020, 2761, 4921, 5049, 6037 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1587, 1750, 3315 |
| BseBI | CCWGG | 6 cut(s) | 477, 1083, 2110, 2234, 4023, 5246 |
| BseCI | ATCGAT | 2 cut(s) | 1696, 3259 |
| BseJI | GATNNNNATC | 3 cut(s) | 1587, 1750, 3315 |
| BseMI | GCAATG | 5 cut(s) | 2020, 2761, 4921, 5049, 6037 |
| BseRI | GAGGAG | 3 cut(s) | 965, 3960, 3963 |
| BseSI | GKGCMC | 3 cut(s) | 2197, 2515, 4962 |
| BseYI | CCCAGC | 1 cut(s) | 3533 |
| BsgI | GTGCAG | 3 cut(s) | 941, 5982, 6132 |
| Bsh1236I | CGCG | 1 cut(s) | 14 |
| BshFI | GGCC | 5 cut(s) | 89, 3356, 3984, 4400, 5798 |
| BshNI | GGYRCC | 5 cut(s) | 655, 734, 862, 2893, 5288 |
| BshVI | ATCGAT | 2 cut(s) | 1696, 3259 |
| BsiHKAI | GWGCWC | 3 cut(s) | 576, 4962, 6301 |
| BsiHKCI | CYCGRG | 1 cut(s) | 4760 |
| BsiSI | CCGG | 2 cut(s) | 794, 1628 |
| BslFI | GGGAC | 4 cut(s) | 1456, 2072, 2698, 3551 |
| BsmBI | CGTCTC | 1 cut(s) | 1916 |
| BsmFI | GGGAC | 4 cut(s) | 1456, 2072, 2698, 3551 |
| BsmI | GAATGC | 3 cut(s) | 853, 3526, 4278 |
| BsnI | GGCC | 5 cut(s) | 89, 3356, 3984, 4400, 5798 |
| Bso31I | GGTCTC | 3 cut(s) | 432, 2749, 4763 |
| BsoBI | CYCGRG | 1 cut(s) | 4760 |
| Bsp1286I | GDGCHC | 5 cut(s) | 576, 2197, 2515, 4962, 6301 |
| Bsp19I | CCATGG | 1 cut(s) | 577 |
| BspANI | GGCC | 5 cut(s) | 89, 3356, 3984, 4400, 5798 |
| BspDI | ATCGAT | 2 cut(s) | 1696, 3259 |
| BspFNI | CGCG | 1 cut(s) | 14 |
| BspHI | TCATGA | 1 cut(s) | 2134 |
| BspMAI | CTGCAG | 7 cut(s) | 1002, 1231, 1643, 1921, 3269, 3850, 3889 |
| BspMI | ACCTGC | 2 cut(s) | 136, 1234 |
| BspOI | GCTAGC | 1 cut(s) | 4257 |
| BspT107I | GGYRCC | 5 cut(s) | 655, 734, 862, 2893, 5288 |
| BspTI | CTTAAG | 1 cut(s) | 110 |
| BspTNI | GGTCTC | 3 cut(s) | 432, 2749, 4763 |
| BsrBI | CCGCTC | 1 cut(s) | 4904 |
| BsrDI | GCAATG | 5 cut(s) | 2020, 2761, 4921, 5049, 6037 |
| BsrFI | RCCGGY | 1 cut(s) | 793 |
| BssAI | RCCGGY | 1 cut(s) | 793 |
| BssT1I | CCWWGG | 9 cut(s) | 577, 1043, 1107, 3151, 3420, 4171, 4494, 4665, 5799 |
| Bst2UI | CCWGG | 6 cut(s) | 477, 1083, 2110, 2234, 4023, 5246 |
| BstAFI | CTTAAG | 1 cut(s) | 110 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3530 |
| BstBAI | YACGTR | 1 cut(s) | 1673 |
| BstDSI | CCRYGG | 2 cut(s) | 577, 1383 |
| BstEII | GGTNACC | 1 cut(s) | 5573 |
| BstFNI | CGCG | 1 cut(s) | 14 |
| BstH2I | RGCGCY | 2 cut(s) | 41, 645 |
| BstHHI | GCGC | 2 cut(s) | 40, 644 |
| BstNI | CCWGG | 6 cut(s) | 477, 1083, 2110, 2234, 4023, 5246 |
| BstNSI | RCATGY | 4 cut(s) | 855, 1943, 2076, 4120 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 5671 |
| BstPI | GGTNACC | 1 cut(s) | 5573 |
| BstSCI | CCNGG | 7 cut(s) | 475, 1081, 1627, 2108, 2232, 4021, 5244 |
| BstSLI | GKGCMC | 3 cut(s) | 2197, 2515, 4962 |
| BstUI | CGCG | 1 cut(s) | 14 |
| BstV2I | GAAGAC | 3 cut(s) | 1316, 2349, 5205 |
| BstX2I | RGATCY | 7 cut(s) | 986, 1124, 3316, 4210, 5086, 6066, 6307 |
| BstXI | CCANNNNNNTGG | 5 cut(s) | 1729, 4388, 4568, 4739, 4974 |
| BstYI | RGATCY | 7 cut(s) | 986, 1124, 3316, 4210, 5086, 6066, 6307 |
| Bsu15I | ATCGAT | 2 cut(s) | 1696, 3259 |
| BsuI | GTATCC | 4 cut(s) | 1576, 2662, 3712, 4942 |
| BsuRI | GGCC | 5 cut(s) | 89, 3356, 3984, 4400, 5798 |
| BsuTUI | ATCGAT | 2 cut(s) | 1696, 3259 |
| BtgI | CCRYGG | 2 cut(s) | 577, 1383 |
| BtgZI | GCGATG | 2 cut(s) | 29, 2939 |
| BtsI | GCAGTG | 2 cut(s) | 1648, 2593 |
| BveI | ACCTGC | 2 cut(s) | 136, 1234 |
| CaiI | CAGNNNCTG | 3 cut(s) | 455, 1319, 4640 |
| CciI | TCATGA | 1 cut(s) | 2134 |
| CfoI | GCGC | 2 cut(s) | 40, 644 |
| Cfr10I | RCCGGY | 1 cut(s) | 793 |
| Cfr13I | GGNCC | 5 cut(s) | 696, 1443, 3147, 3354, 4019 |
| ClaI | ATCGAT | 2 cut(s) | 1696, 3259 |
| CsiI | ACCWGGT | 1 cut(s) | 475 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 882, 917 |
| DraI | TTTAAA | 2 cut(s) | 2703, 4815 |
| DraIII | CACNNNGTG | 1 cut(s) | 2890 |
| EaeI | YGGCCR | 3 cut(s) | 87, 3982, 4398 |
| EciI | GGCGGA | 1 cut(s) | 321 |
| Eco130I | CCWWGG | 9 cut(s) | 577, 1043, 1107, 3151, 3420, 4171, 4494, 4665, 5799 |
| Eco147I | AGGCCT | 1 cut(s) | 5798 |
| Eco31I | GGTCTC | 3 cut(s) | 432, 2749, 4763 |
| Eco32I | GATATC | 2 cut(s) | 3448, 3940 |
| Eco47I | GGWCC | 4 cut(s) | 696, 1443, 3147, 4019 |
| Eco47III | AGCGCT | 1 cut(s) | 39 |
| Eco57I | CTGAAG | 9 cut(s) | 1092, 1510, 1929, 2103, 2238, 2328, 2361, 3270, 3597 |
| Eco88I | CYCGRG | 1 cut(s) | 4760 |
| Eco91I | GGTNACC | 1 cut(s) | 5573 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1443, 3147, 3354 |
| EcoO65I | GGTNACC | 1 cut(s) | 5573 |
| EcoRI | GAATTC | 2 cut(s) | 926, 2905 |
| EcoRII | CCWGG | 6 cut(s) | 475, 1081, 2108, 2232, 4021, 5244 |
| EcoRV | GATATC | 2 cut(s) | 3448, 3940 |
| EcoT14I | CCWWGG | 9 cut(s) | 577, 1043, 1107, 3151, 3420, 4171, 4494, 4665, 5799 |
| EcoT22I | ATGCAT | 3 cut(s) | 853, 1941, 4233 |
| ErhI | CCWWGG | 9 cut(s) | 577, 1043, 1107, 3151, 3420, 4171, 4494, 4665, 5799 |
| Esp3I | CGTCTC | 1 cut(s) | 1916 |
| FaqI | GGGAC | 4 cut(s) | 1456, 2072, 2698, 3551 |
| FauI | CCCGC | 3 cut(s) | 294, 1936, 5565 |
| FauNDI | CATATG | 2 cut(s) | 4233, 5605 |
| FbaI | TGATCA | 7 cut(s) | 1588, 1807, 2296, 2881, 3565, 4875, 6204 |
| FblI | GTMKAC | 1 cut(s) | 4099 |
| GlaI | GCGC | 2 cut(s) | 39, 643 |
| GsaI | CCCAGC | 1 cut(s) | 3537 |
| GsuI | CTGGAG | 5 cut(s) | 4044, 4617, 5289, 6131, 6323 |
| HaeII | RGCGCY | 2 cut(s) | 41, 645 |
| HaeIII | GGCC | 5 cut(s) | 89, 3356, 3984, 4400, 5798 |
| HapII | CCGG | 2 cut(s) | 794, 1628 |
| HhaI | GCGC | 2 cut(s) | 40, 644 |
| Hin6I | GCGC | 2 cut(s) | 38, 642 |
| HinP1I | GCGC | 2 cut(s) | 38, 642 |
| HincII | GTYRAC | 1 cut(s) | 4986 |
| HindII | GTYRAC | 1 cut(s) | 4986 |
| HindIII | AAGCTT | 1 cut(s) | 3718 |
| HpaII | CCGG | 2 cut(s) | 794, 1628 |
| Hpy166II | GTNNAC | 8 cut(s) | 1432, 1670, 3787, 4100, 4790, 4960, 4986, 6251 |
| Hpy8I | GTNNAC | 8 cut(s) | 1432, 1670, 3787, 4100, 4790, 4960, 4986, 6251 |
| HpyCH4IV | ACGT | 4 cut(s) | 1672, 3571, 5033, 5229 |
| HpySE526I | ACGT | 4 cut(s) | 1672, 3571, 5033, 5229 |
| HspAI | GCGC | 2 cut(s) | 38, 642 |
| KpnI | GGTACC | 1 cut(s) | 866 |
| Ksp22I | TGATCA | 7 cut(s) | 1588, 1807, 2296, 2881, 3565, 4875, 6204 |
| LmnI | GCTCC | 5 cut(s) | 28, 452, 579, 3183, 4113 |
| MabI | ACCWGGT | 1 cut(s) | 475 |
| MaeII | ACGT | 4 cut(s) | 1672, 3571, 5033, 5229 |
| MbiI | CCGCTC | 1 cut(s) | 4904 |
| MfeI | CAATTG | 2 cut(s) | 1857, 2208 |
| MflI | RGATCY | 7 cut(s) | 986, 1124, 3316, 4210, 5086, 6066, 6307 |
| MhlI | GDGCHC | 5 cut(s) | 576, 2197, 2515, 4962, 6301 |
| MlsI | TGGCCA | 2 cut(s) | 3984, 4400 |
| MluNI | TGGCCA | 2 cut(s) | 3984, 4400 |
| MmeI | TCCRAC | 6 cut(s) | 141, 1186, 1746, 1909, 2008, 3357 |
| Mox20I | TGGCCA | 2 cut(s) | 3984, 4400 |
| Mph1103I | ATGCAT | 3 cut(s) | 853, 1941, 4233 |
| MroXI | GAANNNNTTC | 4 cut(s) | 808, 2223, 2268, 3082 |
| MscI | TGGCCA | 2 cut(s) | 3984, 4400 |
| MslI | CAYNNNNRTG | 4 cut(s) | 83, 2805, 3904, 3996 |
| Msp20I | TGGCCA | 2 cut(s) | 3984, 4400 |
| MspA1I | CMGCKG | 1 cut(s) | 869 |
| MspCI | CTTAAG | 1 cut(s) | 110 |
| MspI | CCGG | 2 cut(s) | 794, 1628 |
| MspR9I | CCNGG | 7 cut(s) | 477, 1083, 1629, 2110, 2234, 4023, 5246 |
| MunI | CAATTG | 2 cut(s) | 1857, 2208 |
| Mva1269I | GAATGC | 3 cut(s) | 853, 3526, 4278 |
| MvaI | CCWGG | 6 cut(s) | 477, 1083, 2110, 2234, 4023, 5246 |
| MvnI | CGCG | 1 cut(s) | 14 |
| NciI | CCSGG | 1 cut(s) | 1629 |
| NcoI | CCATGG | 1 cut(s) | 577 |
| NdeI | CATATG | 2 cut(s) | 4233, 5605 |
| NheI | GCTAGC | 1 cut(s) | 4253 |
| NmeAIII | GCCGAG | 1 cut(s) | 763 |
| NmuCI | GTSAC | 8 cut(s) | 727, 939, 3208, 3275, 3857, 4244, 5093, 5573 |
| NsiI | ATGCAT | 3 cut(s) | 853, 1941, 4233 |
| NspI | RCATGY | 4 cut(s) | 855, 1943, 2076, 4120 |
| PaeI | GCATGC | 1 cut(s) | 1943 |
| PaeR7I | CTCGAG | 1 cut(s) | 4760 |
| PagI | TCATGA | 1 cut(s) | 2134 |
| PaqCI | CACCTGC | 1 cut(s) | 136 |
| PceI | AGGCCT | 1 cut(s) | 5798 |
| PciI | ACATGT | 1 cut(s) | 2072 |
| PctI | GAATGC | 3 cut(s) | 853, 3526, 4278 |
| PdmI | GAANNNNTTC | 4 cut(s) | 808, 2223, 2268, 3082 |
| PflFI | GACNNNGTC | 1 cut(s) | 3206 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 5584, 5957 |
| PfoI | TCCNGGA | 2 cut(s) | 2108, 4021 |
| Ppu21I | YACGTR | 1 cut(s) | 1673 |
| PpuMI | RGGWCCY | 2 cut(s) | 1443, 3147 |
| PscI | ACATGT | 1 cut(s) | 2072 |
| PshAI | GACNNNNGTC | 1 cut(s) | 5671 |
| PshBI | ATTAAT | 1 cut(s) | 1488 |
| Psp5II | RGGWCCY | 2 cut(s) | 1443, 3147 |
| Psp6I | CCWGG | 6 cut(s) | 475, 1081, 2108, 2232, 4021, 5244 |
| PspEI | GGTNACC | 1 cut(s) | 5573 |
| PspFI | CCCAGC | 1 cut(s) | 3533 |
| PspGI | CCWGG | 6 cut(s) | 475, 1081, 2108, 2232, 4021, 5244 |
| PspPI | GGNCC | 5 cut(s) | 696, 1443, 3147, 3354, 4019 |
| PspPPI | RGGWCCY | 2 cut(s) | 1443, 3147 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1662, 1694 |
| PstI | CTGCAG | 7 cut(s) | 1002, 1231, 1643, 1921, 3269, 3850, 3889 |
| PstNI | CAGNNNCTG | 3 cut(s) | 455, 1319, 4640 |
| PsuI | RGATCY | 7 cut(s) | 986, 1124, 3316, 4210, 5086, 6066, 6307 |
| PsyI | GACNNNGTC | 1 cut(s) | 3206 |
| RseI | CAYNNNNRTG | 4 cut(s) | 83, 2805, 3904, 3996 |
| Sau96I | GGNCC | 5 cut(s) | 696, 1443, 3147, 3354, 4019 |
| SbfI | CCTGCAGG | 1 cut(s) | 1231 |
| ScaI | AGTACT | 1 cut(s) | 5488 |
| ScrFI | CCNGG | 7 cut(s) | 477, 1083, 1629, 2110, 2234, 4023, 5246 |
| SdaI | CCTGCAGG | 1 cut(s) | 1231 |
| SduI | GDGCHC | 5 cut(s) | 576, 2197, 2515, 4962, 6301 |
| SexAI | ACCWGGT | 1 cut(s) | 475 |
| Sfr274I | CTCGAG | 1 cut(s) | 4760 |
| SinI | GGWCC | 4 cut(s) | 696, 1443, 3147, 4019 |
| SlaI | CTCGAG | 1 cut(s) | 4760 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 83, 2805, 3904, 3996 |
| SmlI | CTYRAG | 5 cut(s) | 110, 2790, 4160, 4760, 6021 |
| SmoI | CTYRAG | 5 cut(s) | 110, 2790, 4160, 4760, 6021 |
| SpeI | ACTAGT | 2 cut(s) | 4697, 5909 |
| SphI | GCATGC | 1 cut(s) | 1943 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1231 |
| SseBI | AGGCCT | 1 cut(s) | 5798 |
| SspI | AATATT | 2 cut(s) | 3232, 4387 |
| StuI | AGGCCT | 1 cut(s) | 5798 |
| StyD4I | CCNGG | 7 cut(s) | 475, 1081, 1627, 2108, 2232, 4021, 5244 |
| StyI | CCWWGG | 9 cut(s) | 577, 1043, 1107, 3151, 3420, 4171, 4494, 4665, 5799 |
| TaiI | ACGT | 4 cut(s) | 1675, 3574, 5036, 5232 |
| TatI | WGTACW | 4 cut(s) | 285, 2141, 5437, 5486 |
| TauI | GCSGC | 1 cut(s) | 6045 |
| TseFI | GTSAC | 8 cut(s) | 727, 939, 3208, 3275, 3857, 4244, 5093, 5573 |
| Tsp45I | GTSAC | 8 cut(s) | 727, 939, 3208, 3275, 3857, 4244, 5093, 5573 |
| TspGWI | ACGGA | 5 cut(s) | 1400, 1422, 2405, 5513, 6172 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3206 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 5584, 5957 |
| Vha464I | CTTAAG | 1 cut(s) | 110 |
| VneI | GTGCAC | 1 cut(s) | 4958 |
| VpaK11BI | GGWCC | 4 cut(s) | 696, 1443, 3147, 4019 |
| VspI | ATTAAT | 1 cut(s) | 1488 |
| XceI | RCATGY | 4 cut(s) | 855, 1943, 2076, 4120 |
| XcmI | CCANNNNNNNNNTGG | 4 cut(s) | 1390, 4928, 5252, 6025 |
| XhoI | CTCGAG | 1 cut(s) | 4760 |
| XmiI | GTMKAC | 1 cut(s) | 4099 |
| XmnI | GAANNNNTTC | 4 cut(s) | 808, 2223, 2268, 3082 |
| ZrmI | AGTACT | 1 cut(s) | 5488 |
| Zsp2I | ATGCAT | 3 cut(s) | 853, 1941, 4233 |