Rroxscaffold_7G00193800

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
35366883 .. 35367381
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193800.1

Sequence Viewer

Length: 393 bp
ATGGATTGGCCTTTTGGAGACGATGACAAAATATCAAACGCCAATTCAACTAGTGAAGATGTTAAGAATGGGAATGGAGGTGTAGCTGTTCCACAAGTTGGTGCAGGGGAACTTAGTGGGCATAAGCATCAACTGAGAGAAGTTGTGAAGCTGAAATCCACTCAGAAATTGGGTATTCATTGCCACCAATGTTCTCCTGTTACTGAGTGTTCTAGTCATGCAAAACTGGATTCAATCAGAGAAAGAGCTCTAGAGGCAGATTTGGAGAAAAGTATTAGTGTTTCTACTACACCAAGTCGGAAGAAGAACAGAGATATTTTTGTCCCTAGAACTCCAAAGAATCTTATCAATAAGTCTGATATGAAAGGAAAACTTCAGTGCCAGAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.29

Weight (kDa)

8.93

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 2 cut(s) 48, 234
AhlI ACTAGT 1 cut(s) 50
AluBI AGCT 3 cut(s) 86, 151, 248
AluI AGCT 3 cut(s) 86, 151, 248
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 12
AoxI GGCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 12
BcuI ACTAGT 1 cut(s) 50
BfaI CTAG 4 cut(s) 51, 213, 251, 327
BmsI GCATC 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 3 cut(s) 125, 176, 195
BseNI ACTGG 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 250
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 250
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 3 cut(s) 126, 175, 196
BsrDI GCAATG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 231
BstDEI CTNAG 4 cut(s) 113, 134, 162, 204
BstMAI GTCTC 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 383
CviAII CATG 1 cut(s) 218
CviJI RGCY 4 cut(s) 10, 86, 151, 248
CviKI_1 RGCY 4 cut(s) 10, 86, 151, 248
DdeI CTNAG 4 cut(s) 113, 134, 162, 204
Ecl136II GAGCTC 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 250
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 1 cut(s) 221
FaiI YATR 3 cut(s) 123, 219, 362
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 1 cut(s) 308
FatI CATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 250
FspBI CTAG 4 cut(s) 51, 213, 251, 327
HaeIII GGCC 1 cut(s) 10
Hin1II CATG 1 cut(s) 221
HinfI GANTC 2 cut(s) 230, 340
Hpy188I TCNGA 4 cut(s) 165, 239, 300, 358
Hpy188III TCNNGA 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 104, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 4 cut(s) 113, 134, 162, 204
Hsp92II CATG 1 cut(s) 221
LpnPI CCDG 3 cut(s) 90, 210, 212
LweI GCATC 1 cut(s) 136
MaeI CTAG 4 cut(s) 51, 213, 251, 327
MaeIII GTNAC 1 cut(s) 199
MboII GAAGA 3 cut(s) 68, 313, 316
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 2 cut(s) 43, 167
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 2 cut(s) 71, 247
MseI TTAA 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 254
NlaIII CATG 1 cut(s) 221
PfeI GAWTC 2 cut(s) 230, 340
PflMI CCANNNNNTGG 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 250
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 63
SduI GDGCHC 1 cut(s) 250
SetI ASST 4 cut(s) 82, 88, 153, 250
SfaNI GCATC 1 cut(s) 136
SpeI ACTAGT 1 cut(s) 50
Sse9I AATT 2 cut(s) 43, 167
SspMI CTAG 4 cut(s) 51, 213, 251, 327
SstI GAGCTC 1 cut(s) 250
TasI AATT 2 cut(s) 43, 167
TfiI GAWTC 2 cut(s) 230, 340
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 383
TspDTI ATGAA 2 cut(s) 167, 377
TspRI CASTG 1 cut(s) 383
Van91I CCANNNNNTGG 1 cut(s) 98
XbaI TCTAGA 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
XspI CTAG 4 cut(s) 51, 213, 251, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.