RLG00000013508

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
32503629 .. 32506729
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013508

Sequence Viewer

Length: 1608 bp
ATGGCCATAGACACACACAGCAATGATGCAGCAGACATAACTGGTCCTGGAGGCATGGAAGTTAGTAAGGAGAATACTGTGGATGGAACTAAGATGGTTGACCAAGAACTGATTGGTGGCTGCAGTCTACTGGAAGCAAGGAGCACATCAGCCCAGGATCCTGAAAAGAAGAATATGCATATGCTAGTTGGTGACAATGCTAGCACAGATGGATTCGGAATGCAGGAAAGCATCTCAGTTGAGAAGGTTGATGAAAGTCTCGATGCTGGTTCTGAGAAAGAAAACCACACACTACACTCCGAAGAGACAGAGGAAATACTTGATCTCAATATTGGTTCTGTGGCCACCTGTTCTGCTGATTCCACCGAACCCTCTACACTAAAACCTGAAATTGGTGTTGATTGTCCTACTGATTCTCCTGTTACTGCTACTAATTATGGTTTTTCAACAGAAGTAGAACCATGCCTTGATAATGCTTGTGCCAAACCTCAAACGTGTAAAGGTGCTGCCATTGCCTCAGAGTTTATTGTTTCTTCATCTCTTGGAGATCTATGTGAATTAATATGGTTTACTAAGGCTGACAGTGAAAGTGCAAAAGAAAAGGTGGCAACTGATGATTGTTTGGGAGATCAACCATCAGAAAATTTGAGAGTTTCTGAAGACCTAGAATCTCATATAATGATTGGTAACGTAATGGTGATGAAGCAGGAAGAAGATGCAAATTCTGTGCTATCATTTGGTTATGTAGGTCCCAATACAGTGTCTTCAGAAACAGTGGTTGGGTGTTCGAAAAGTAATATCGCTGCTGGTATTGAGGTTTCAAATCTGAGATTAAATGAAGCATCAAGTTCCAAGGATTCTACTTCTGATGAACTGAGTAGATGCAATCTTTGTGATGATGTACTGGTTGATGGCAGTAGAGACAATAATGTTGTTGCAGACAAAGTTAGTACTAGAAGTATGGAAGCAATAATTGGTATTAAGAATGCTGGTGATGGGGTTAAGTCGGTAGAAAAAAAACGCCGCAAATATTGGATGCTGACAAGACATCTGTCTGTGCAAGGTAGAGGCTTGATGGCAGAAAGAGTCTCAGGCTTGAAGTTTGAAGGTCCTAATGCTGGCATAGATGGTTTTGCTGATACTCCTGCTACTGCTTCAAGGCATGATCCAGAGATGTCAAACGCCAATTCAACTAGCGAAGATGTTAAGAATGGGAATGGAGGTGTAGCTATTCCACAAGTTGGTGCAGGAAAACTTAGTGGGCATAAGCATCAACTGAGAGAAGTTGTGAAGCTGAAATCCACTCAGAAATTGGGTATTCATTGCCACCAATGTTCTCCTGTTACTGAGTGTTCTAGTCATGCAAAACTGGATTCAATCAGAGAAACAGCTCTAGAGGCAGATTTGGGGAAAAGGATTAGTGTTTCTACTACACCAGGTCGGAAGAAGAACAGAGATATTTTTGTCCCTAGGACTCCAAAGAATCTTATCATTAAGTCTGATATGAAGGAAAACTTCAGTGCCAGAAAGAGTAAACCAGTAACAAACATCACTTCAGTAAAACCTCTGCATGGCAGGCGAGCATTGGAGGATCTCCAAAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

536

Amino Acids

57.26

Weight (kDa)

5.12

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1241
AccI GTMKAC 1 cut(s) 127
AciI CCGC 1 cut(s) 1024
AclWI GGATC 4 cut(s) 152, 165, 1160, 1599
AcoI YGGCCR 2 cut(s) 3, 342
AcsI RAATTY 2 cut(s) 643, 721
AcuI CTGAAG 4 cut(s) 678, 750, 1501, 1539
AfaI GTAC 2 cut(s) 903, 952
AfiI CCNNNNNNNGG 4 cut(s) 392, 1118, 1241, 1571
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 7 cut(s) 447, 822, 1099, 1106, 1158, 1191, 1377
AjnI CCWGG 3 cut(s) 46, 153, 1435
AjuI GAANNNNNNNTTGG 4 cut(s) 762, 794, 957, 989
AluBI AGCT 3 cut(s) 1229, 1294, 1391
AluI AGCT 3 cut(s) 1229, 1294, 1391
Alw21I GWGCWC 1 cut(s) 146
Alw26I GTCTC 4 cut(s) 263, 299, 915, 1093
AlwI GGATC 4 cut(s) 152, 165, 1160, 1599
AoxI GGCC 2 cut(s) 3, 342
ApeKI GCWGC 4 cut(s) 29, 120, 506, 803
ApoI RAATTY 2 cut(s) 643, 721
AseI ATTAAT 1 cut(s) 560
AspA2I CCTAGG 1 cut(s) 1469
AspS9I GGNCC 3 cut(s) 44, 749, 1109
AsuHPI GGTGA 3 cut(s) 203, 709, 1004
AsuII TTCGAA 1 cut(s) 788
AsuNHI GCTAGC 1 cut(s) 200
AvaII GGWCC 3 cut(s) 44, 749, 1109
AvrII CCTAGG 1 cut(s) 1469
BalI TGGCCA 2 cut(s) 5, 344
BamHI GGATCC 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 666, 756
Bbv12I GWGCWC 1 cut(s) 146
BbvI GCAGC 4 cut(s) 41, 107, 493, 790
BccI CCATC 8 cut(s) 77, 88, 203, 643, 905, 989, 1069, 1121
BciT130I CCWGG 3 cut(s) 48, 155, 1437
BcoDI GTCTC 4 cut(s) 263, 299, 915, 1093
BfaI CTAG 8 cut(s) 185, 201, 665, 954, 1194, 1356, 1394, 1470
BfmI CTRYAG 1 cut(s) 121
BglII AGATCT 1 cut(s) 547
BisI GCNGC 5 cut(s) 30, 121, 507, 804, 1024
BlnI CCTAGG 1 cut(s) 1469
BlsI GCNGC 5 cut(s) 31, 122, 508, 805, 1025
BmcAI AGTACT 1 cut(s) 952
Bme1390I CCNGG 3 cut(s) 48, 155, 1437
Bme18I GGWCC 3 cut(s) 44, 749, 1109
BmgT120I GGNCC 3 cut(s) 44, 749, 1109
BmiI GGNNCC 2 cut(s) 159, 751
BmrFI CCNGG 3 cut(s) 48, 155, 1437
BmsI GCATC 8 cut(s) 16, 240, 253, 706, 851, 872, 1026, 1279
BmtI GCTAGC 1 cut(s) 204
BoxI GACNNNNGTC 1 cut(s) 1051
BpiI GAAGAC 2 cut(s) 666, 756
BpmI CTGGAG 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 788
BsaJI CCNNGG 3 cut(s) 153, 852, 1469
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bsc4I CCNNNNNNNGG 4 cut(s) 392, 1118, 1241, 1571
Bse1I ACTGG 5 cut(s) 46, 135, 909, 1374, 1538
Bse3DI GCAATG 3 cut(s) 28, 510, 1321
BseBI CCWGG 3 cut(s) 48, 155, 1437
BseDI CCNNGG 3 cut(s) 153, 852, 1469
BseGI GGATG 2 cut(s) 88, 1041
BseLI CCNNNNNNNGG 4 cut(s) 392, 1118, 1241, 1571
BseMI GCAATG 3 cut(s) 28, 510, 1321
BseMII CTCAG 9 cut(s) 249, 264, 531, 818, 866, 1104, 1268, 1319, 1338
BseNI ACTGG 5 cut(s) 46, 135, 909, 1374, 1538
BseXI GCAGC 4 cut(s) 41, 107, 493, 790
BsgI GTGCAG 1 cut(s) 1266
BshFI GGCC 2 cut(s) 5, 344
BsiHKAI GWGCWC 1 cut(s) 146
BslFI GGGAC 2 cut(s) 735, 1451
BslI CCNNNNNNNGG 4 cut(s) 392, 1118, 1241, 1571
BsmAI GTCTC 4 cut(s) 263, 299, 915, 1093
BsmFI GGGAC 2 cut(s) 735, 1451
BsmI GAATGC 2 cut(s) 225, 991
BsnI GGCC 2 cut(s) 5, 344
Bsp119I TTCGAA 1 cut(s) 788
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 6 cut(s) 157, 322, 547, 628, 1165, 1591
BspACI CCGC 1 cut(s) 1024
BspANI GGCC 2 cut(s) 5, 344
BspCNI CTCAG 9 cut(s) 248, 265, 530, 819, 867, 1103, 1269, 1318, 1339
BspLI GGNNCC 2 cut(s) 159, 751
BspMAI CTGCAG 1 cut(s) 125
BspOI GCTAGC 1 cut(s) 204
BspPI GGATC 4 cut(s) 152, 165, 1160, 1599
BspT104I TTCGAA 1 cut(s) 788
BsrDI GCAATG 3 cut(s) 28, 510, 1321
BsrI ACTGG 5 cut(s) 46, 135, 909, 1374, 1538
BssECI CCNNGG 3 cut(s) 153, 852, 1469
BssMI GATC 6 cut(s) 157, 322, 547, 628, 1165, 1591
BssT1I CCWWGG 2 cut(s) 852, 1469
Bst2UI CCWGG 3 cut(s) 48, 155, 1437
Bst4CI ACNGT 4 cut(s) 79, 584, 760, 775
Bst6I CTCTTC 1 cut(s) 297
BstBI TTCGAA 1 cut(s) 788
BstC8I GCNNGC 4 cut(s) 202, 1120, 1577, 1581
BstF5I GGATG 2 cut(s) 88, 1041
BstKTI GATC 6 cut(s) 160, 325, 550, 631, 1168, 1594
BstMAI GTCTC 4 cut(s) 263, 299, 915, 1093
BstMBI GATC 6 cut(s) 157, 322, 547, 628, 1165, 1591
BstMWI GCNNNNNNNGC 3 cut(s) 512, 1397, 1576
BstNI CCWGG 3 cut(s) 48, 155, 1437
BstPAI GACNNNNGTC 1 cut(s) 1051
BstSCI CCNGG 3 cut(s) 46, 153, 1435
BstSFI CTRYAG 1 cut(s) 121
BstV1I GCAGC 4 cut(s) 41, 107, 493, 790
BstV2I GAAGAC 2 cut(s) 666, 756
BstX2I RGATCY 3 cut(s) 157, 547, 1591
BstYI RGATCY 3 cut(s) 157, 547, 1591
BsuRI GGCC 2 cut(s) 5, 344
BtsCI GGATG 2 cut(s) 88, 1041
BtsIMutI CAGTG 4 cut(s) 589, 765, 780, 1525
Cac8I GCNNGC 4 cut(s) 202, 1120, 1577, 1581
Cfr13I GGNCC 3 cut(s) 44, 749, 1109
CsiI ACCWGGT 1 cut(s) 1435
Csp6I GTAC 2 cut(s) 902, 951
CviAII CATG 5 cut(s) 55, 462, 1163, 1361, 1571
CviQI GTAC 2 cut(s) 902, 951
DpnI GATC 6 cut(s) 159, 324, 549, 630, 1167, 1593
DpnII GATC 6 cut(s) 157, 322, 547, 628, 1165, 1591
EaeI YGGCCR 2 cut(s) 3, 342
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 852, 1469
Eco47I GGWCC 3 cut(s) 44, 749, 1109
Eco57I CTGAAG 4 cut(s) 678, 750, 1501, 1539
EcoO109I RGGNCCY 2 cut(s) 749, 1109
EcoRII CCWGG 3 cut(s) 46, 153, 1435
EcoT14I CCWWGG 2 cut(s) 852, 1469
EcoT22I ATGCAT 1 cut(s) 180
ErhI CCWWGG 2 cut(s) 852, 1469
FaeI CATG 5 cut(s) 58, 465, 1166, 1364, 1574
FalI AAGNNNNNCTT 2 cut(s) 1499, 1531
FaqI GGGAC 2 cut(s) 735, 1451
FatI CATG 5 cut(s) 54, 461, 1162, 1360, 1570
FauNDI CATATG 1 cut(s) 180
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 5 cut(s) 30, 121, 507, 804, 1024
FokI GGATG 2 cut(s) 95, 1048
Fsp4HI GCNGC 5 cut(s) 30, 121, 507, 804, 1024
FspBI CTAG 8 cut(s) 185, 201, 665, 954, 1194, 1356, 1394, 1470
GluI GCNGC 5 cut(s) 30, 121, 507, 804, 1024
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 2 cut(s) 5, 344
Hin1II CATG 5 cut(s) 58, 465, 1166, 1364, 1574
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 9 cut(s) 213, 359, 413, 668, 857, 1086, 1373, 1474, 1483
HphI GGTGA 3 cut(s) 203, 709, 1004
Hpy166II GTNNAC 4 cut(s) 100, 128, 570, 1535
Hpy188III TCNNGA 4 cut(s) 161, 260, 1169, 1394
Hpy8I GTNNAC 4 cut(s) 100, 128, 570, 1535
HpyAV CCTTC 3 cut(s) 238, 1100, 1501
HpyCH4III ACNGT 4 cut(s) 79, 584, 760, 775
HpyCH4IV ACGT 2 cut(s) 494, 690
HpyF10VI GCNNNNNNNGC 3 cut(s) 512, 1397, 1576
HpySE526I ACGT 2 cut(s) 494, 690
Hsp92II CATG 5 cut(s) 58, 465, 1166, 1364, 1574
Kzo9I GATC 6 cut(s) 157, 322, 547, 628, 1165, 1591
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 4 cut(s) 41, 107, 493, 790
LweI GCATC 8 cut(s) 16, 240, 253, 706, 851, 872, 1026, 1279
MabI ACCWGGT 1 cut(s) 1435
MaeI CTAG 8 cut(s) 185, 201, 665, 954, 1194, 1356, 1394, 1470
MaeII ACGT 2 cut(s) 494, 690
MaeIII GTNAC 5 cut(s) 191, 421, 686, 1342, 1540
MalI GATC 6 cut(s) 159, 324, 549, 630, 1167, 1593
MboI GATC 6 cut(s) 157, 322, 547, 628, 1165, 1591
MflI RGATCY 3 cut(s) 157, 547, 1591
MhlI GDGCHC 1 cut(s) 146
MlsI TGGCCA 2 cut(s) 5, 344
MluCI AATT 8 cut(s) 390, 433, 557, 643, 721, 972, 1186, 1310
MluNI TGGCCA 2 cut(s) 5, 344
MlyI GAGTC 2 cut(s) 1095, 1468
MmeI TCCRAC 1 cut(s) 1421
Mox20I TGGCCA 2 cut(s) 5, 344
Mph1103I ATGCAT 1 cut(s) 180
MscI TGGCCA 2 cut(s) 5, 344
MseI TTAA 6 cut(s) 560, 833, 981, 1002, 1206, 1494
MslI CAYNNNNRTG 1 cut(s) 21
Msp20I TGGCCA 2 cut(s) 5, 344
MspR9I CCNGG 3 cut(s) 48, 155, 1437
Mva1269I GAATGC 2 cut(s) 225, 991
MvaI CCWGG 3 cut(s) 48, 155, 1437
MwoI GCNNNNNNNGC 3 cut(s) 512, 1397, 1576
NdeI CATATG 1 cut(s) 180
NdeII GATC 6 cut(s) 157, 322, 547, 628, 1165, 1591
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 5 cut(s) 58, 465, 1166, 1364, 1574
NlaIV GGNNCC 2 cut(s) 159, 751
NmuCI GTSAC 1 cut(s) 191
NsiI ATGCAT 1 cut(s) 180
NspV TTCGAA 1 cut(s) 788
PctI GAATGC 2 cut(s) 225, 991
PfeI GAWTC 7 cut(s) 213, 359, 413, 668, 857, 1373, 1483
PflMI CCANNNNNTGG 1 cut(s) 1241
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 5 cut(s) 31, 122, 508, 805, 1025
PleI GAGTC 2 cut(s) 1094, 1468
PpsI GAGTC 2 cut(s) 1094, 1468
PpuMI RGGWCCY 2 cut(s) 749, 1109
PshAI GACNNNNGTC 1 cut(s) 1051
PshBI ATTAAT 1 cut(s) 560
Psp5II RGGWCCY 2 cut(s) 749, 1109
Psp6I CCWGG 3 cut(s) 46, 153, 1435
PspGI CCWGG 3 cut(s) 46, 153, 1435
PspN4I GGNNCC 2 cut(s) 159, 751
PspPI GGNCC 3 cut(s) 44, 749, 1109
PspPPI RGGWCCY 2 cut(s) 749, 1109
PstI CTGCAG 1 cut(s) 125
PsuI RGATCY 3 cut(s) 157, 547, 1591
RsaI GTAC 2 cut(s) 903, 952
RsaNI GTAC 2 cut(s) 902, 951
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 6 cut(s) 560, 833, 981, 1002, 1206, 1494
SatI GCNGC 5 cut(s) 30, 121, 507, 804, 1024
Sau3AI GATC 6 cut(s) 157, 322, 547, 628, 1165, 1591
Sau96I GGNCC 3 cut(s) 44, 749, 1109
ScaI AGTACT 1 cut(s) 952
SchI GAGTC 2 cut(s) 1095, 1468
ScrFI CCNGG 3 cut(s) 48, 155, 1437
SduI GDGCHC 1 cut(s) 146
SexAI ACCWGGT 1 cut(s) 1435
SfaNI GCATC 8 cut(s) 16, 240, 253, 706, 851, 872, 1026, 1279
SfcI CTRYAG 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 788
SinI GGWCC 3 cut(s) 44, 749, 1109
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 8 cut(s) 390, 433, 557, 643, 721, 972, 1186, 1310
SsiI CCGC 1 cut(s) 1024
SspI AATATT 2 cut(s) 331, 1031
SspMI CTAG 8 cut(s) 185, 201, 665, 954, 1194, 1356, 1394, 1470
StyD4I CCNGG 3 cut(s) 46, 153, 1435
StyI CCWWGG 2 cut(s) 852, 1469
TaaI ACNGT 4 cut(s) 79, 584, 760, 775
TaiI ACGT 2 cut(s) 497, 693
TaqI TCGA 2 cut(s) 261, 788
TasI AATT 8 cut(s) 390, 433, 557, 643, 721, 972, 1186, 1310
TatI WGTACW 2 cut(s) 901, 950
TauI GCSGC 1 cut(s) 1026
TfiI GAWTC 7 cut(s) 213, 359, 413, 668, 857, 1373, 1483
Tru1I TTAA 6 cut(s) 560, 833, 981, 1002, 1206, 1494
Tru9I TTAA 6 cut(s) 560, 833, 981, 1002, 1206, 1494
TscAI CASTG 4 cut(s) 589, 765, 780, 1525
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 4 cut(s) 29, 120, 506, 803
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 7 cut(s) 267, 525, 716, 852, 885, 1310, 1520
TspRI CASTG 4 cut(s) 589, 765, 780, 1525
Van91I CCANNNNNTGG 1 cut(s) 1241
VpaK11BI GGWCC 3 cut(s) 44, 749, 1109
VspI ATTAAT 1 cut(s) 560
XapI RAATTY 2 cut(s) 643, 721
XbaI TCTAGA 1 cut(s) 1393
XcmI CCANNNNNNNNNTGG 2 cut(s) 110, 1309
XmaJI CCTAGG 1 cut(s) 1469
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 8 cut(s) 185, 201, 665, 954, 1194, 1356, 1394, 1470
ZrmI AGTACT 1 cut(s) 952
Zsp2I ATGCAT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.